Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.9e-63 245.7 129 100.0
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 6.7e-61 237.3 129 98.4
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 5.3e-58 227.6 129 89.9
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.2e-57 226.5 129 90.7
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.2e-57 226.5 129 90.7
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.6e-57 225.3 129 89.9
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 5.9e-57 224.2 131 89.3
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 5.9e-57 224.2 129 88.4
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 5.9e-57 224.2 129 88.4
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 1.7e-56 222.6 129 89.1
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 2.2e-56 222.2 125 89.6
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 2.2e-56 222.2 129 87.6
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 2.9e-56 221.9 127 90.6
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 3.8e-56 221.5 129 88.4
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 6.5e-56 220.7 129 86.0
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 6.5e-56 220.7 129 87.6
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 8.5e-56 220.3 126 88.1
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 8.5e-56 220.3 126 88.1
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 8.5e-56 220.3 126 88.1
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.9e-55 219.2 129 87.6
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 1.2e-54 216.5 130 86.9
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.6e-54 216.1 131 86.3
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 3.6e-54 214.9 128 86.7
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 4.7e-54 214.5 133 87.2
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 4.7e-54 214.5 126 86.5
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 7.9e-54 213.8 129 85.3
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 7.9e-54 213.8 129 84.5
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.8e-53 212.6 129 84.5
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 1.8e-53 212.6 129 85.3
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 3.9e-53 211.5 129 85.3
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 3.9e-53 211.5 129 83.7
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 2.0e-52 209.1 129 82.9
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 2.0e-52 209.1 147 76.9
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 2.6e-52 208.8 129 84.5
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 2.6e-52 208.8 129 83.7
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 3.3e-52 208.4 129 82.9
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 5.7e-52 207.6 124 84.7
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 5.7e-52 207.6 129 82.2
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.7e-51 206.1 130 84.6
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 2.8e-51 205.3 130 83.8
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 2.8e-51 205.3 130 83.8
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 4.8e-51 204.5 130 83.1
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 1.1e-50 203.4 130 81.5
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.1e-50 203.4 126 84.1
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 1.1e-50 203.4 136 77.2
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 1.4e-50 203.0 125 84.8
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 1.4e-50 203.0 124 82.3
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 1.8e-50 202.6 124 83.1
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 2.4e-50 202.2 127 81.9
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 7.0e-50 200.7 127 81.1
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 9.1e-50 200.3 124 82.3
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 1.2e-49 199.9 129 82.9
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 1.2e-49 199.9 124 80.6
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.2e-49 199.9 127 80.3
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 1.2e-49 199.9 130 82.3
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.6e-49 199.5 127 79.5
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 2.0e-49 199.1 124 81.5
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 2.6e-49 198.7 126 77.0
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 4.5e-49 198.0 130 79.2
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 5.9e-49 197.6 130 81.5
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 5.9e-49 197.6 129 81.4
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 5.9e-49 197.6 131 77.9
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 5.9e-49 197.6 124 80.6
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 7.7e-49 197.2 127 78.7
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 7.7e-49 197.2 140 76.4
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 1.0e-48 196.8 124 79.8
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 2.2e-48 195.7 131 77.1
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 3.8e-48 194.9 127 78.0
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 8.5e-48 193.7 127 77.2
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 1.9e-47 192.6 127 77.2
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 2.5e-47 192.2 130 79.2
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 4.2e-47 191.4 131 76.3
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 4.2e-47 191.4 123 78.0
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 5.5e-47 191.0 127 78.7
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 5.5e-47 191.0 129 81.4
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 5.5e-47 191.0 124 77.4
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 7.2e-47 190.7 107 89.7
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 9.4e-47 190.3 126 78.6
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 9.4e-47 190.3 167 64.7
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 1.2e-46 189.9 126 79.4
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.2e-46 189.9 126 79.4
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.6e-46 189.5 126 77.8
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 2.7e-46 188.7 127 75.6
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 3.6e-46 188.3 122 78.7
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 4.7e-46 188.0 130 76.2
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 4.7e-46 188.0 131 74.8
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 6.1e-46 187.6 107 87.9
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 1.0e-45 186.8 122 77.0
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 1.0e-45 186.8 124 75.0
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 1.8e-45 186.0 130 76.2
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 1.8e-45 186.0 130 75.4
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 1.8e-45 186.0 126 77.0
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 2.3e-45 185.7 126 73.8
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 4.0e-45 184.9 122 77.0
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 5.2e-45 184.5 132 72.0
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 5.2e-45 184.5 132 75.0
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 2.0e-44 182.6 132 70.5
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 4.8e-43 177.9 122 75.4
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 3.1e-42 175.3 120 72.5
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.2e-41 173.3 156 65.4
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.2e-41 173.3 105 81.9
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 1.0e-40 170.2 132 68.9
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 1.3e-40 169.9 120 75.0
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 2.2e-40 169.1 128 70.3
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 5.0e-40 167.9 130 68.5
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 5.0e-40 167.9 130 68.5
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 5.0e-40 167.9 130 68.5
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 6.5e-40 167.5 127 67.7
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 1.1e-39 166.8 125 71.2
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.1e-39 166.8 167 55.7
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 2.5e-39 165.6 120 69.2
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 2.5e-39 165.6 129 67.4
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 4.2e-39 164.9 104 80.8
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 4.2e-39 164.9 95 86.3
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 5.5e-39 164.5 129 65.1
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 5.5e-39 164.5 129 65.1
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 5.5e-39 164.5 121 69.4
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 7.2e-39 164.1 111 73.9
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 7.2e-39 164.1 115 71.3
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 9.4e-39 163.7 133 66.9
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 1.6e-38 162.9 125 72.8
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 2.1e-38 162.5 131 64.9
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.7e-38 162.2 92 89.1
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 3.6e-38 161.8 139 64.0
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 6.1e-38 161.0 120 70.0
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 2.3e-37 159.1 96 83.3
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 3.0e-37 158.7 128 63.3
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 4.0e-37 158.3 126 64.3
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 5.2e-37 157.9 111 67.6
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 5.2e-37 157.9 109 68.8
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 8.8e-37 157.1 110 66.4
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 9.8e-36 153.7 130 59.2
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 1.3e-35 153.3 163 54.6
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 2.8e-35 152.1 93 82.8
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.2e-33 146.7 82 92.7
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 1.6e-33 146.4 87 82.8
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 2.0e-33 146.0 101 68.3
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 3.5e-33 145.2 127 63.8
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 4.5e-33 144.8 90 78.9
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 3.8e-32 141.7 127 62.2
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 3.2e-31 138.7 117 59.8
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 2.3e-29 132.5 83 85.5
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 8.8e-29 130.6 119 60.5
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 8.3e-27 124.0 78 80.8
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 2.0e-25 119.4 63 87.3
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 3.8e-24 115.2 92 65.2
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 4.3e-23 111.7 76 72.4
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 4.3e-23 111.7 69 81.2
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.8e-22 109.0 95 61.1
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 6.1e-22 107.8 61 88.5
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 1.0e-21 107.1 105 51.4
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 1.7e-19 99.8 124 50.0
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 2.9e-19 99.0 52 96.2
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 8.3e-19 97.4 103 44.7
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 3.9e-16 88.6 89 48.3
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 2.8e-14 82.4 114 43.0
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 4.4e-12 75.1 47 76.6
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.7e-11 72.0 65 58.5
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 5.4e-10 68.2 93 35.5
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 3.9e-08 62.0 35 88.6


User provided reference genes

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