Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.5e-238 828.6 480 100.0
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 2.5e-161 572.8 510 66.9
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 1.5e-150 537.0 484 61.2
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.1e-148 530.8 477 65.0
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.1e-147 526.6 468 61.8
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.9e-146 522.3 487 63.0
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 1.5e-145 520.4 398 68.8
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.9e-145 520.0 468 61.1
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.3e-145 519.2 475 62.7
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 5.6e-145 518.5 468 61.3
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 2.0e-142 510.0 471 60.1
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 2.2e-141 506.5 478 60.5
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 1.1e-140 504.2 391 66.8
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 1.2e-139 500.7 493 63.5
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 2.3e-138 496.5 486 58.8
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 3.0e-138 496.1 479 57.8
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 3.0e-138 496.1 491 58.0
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.9e-138 495.7 472 59.1
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 3.9e-138 495.7 498 57.8
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 8.7e-138 494.6 384 68.0
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 8.7e-138 494.6 476 59.0
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 5.6e-137 491.9 480 59.0
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 1.3e-136 490.7 482 59.3
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 2.8e-136 489.6 487 63.2
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 6.9e-135 485.0 396 63.9
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 9.0e-135 484.6 490 55.9
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 9.0e-135 484.6 401 63.6
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.2e-134 484.2 396 64.1
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 2.0e-134 483.4 380 67.9
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 5.8e-134 481.9 475 58.9
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 4.9e-133 478.8 401 61.6
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 4.9e-133 478.8 490 57.6
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 1.1e-132 477.6 491 60.3
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.4e-132 477.2 381 64.0
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 1.4e-132 477.2 484 56.0
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.9e-132 476.9 450 56.4
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.9e-132 476.9 410 62.9
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.2e-132 475.7 473 58.1
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 9.3e-132 474.6 489 56.2
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.2e-131 474.2 513 54.0
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.6e-131 473.8 406 64.3
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.7e-131 473.0 400 65.0
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 3.5e-131 472.6 383 66.3
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 6.0e-131 471.9 397 64.0
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 6.0e-131 471.9 472 56.8
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.8e-130 470.3 451 55.7
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 3.9e-130 469.2 483 56.5
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 3.9e-130 469.2 482 56.8
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 5.1e-130 468.8 388 63.7
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.1e-129 467.6 400 63.5
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.5e-129 467.2 475 57.3
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.9e-129 466.8 402 63.9
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 1.9e-129 466.8 490 60.6
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.9e-129 466.8 376 64.1
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 3.3e-129 466.1 407 60.9
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 4.3e-129 465.7 485 54.4
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 5.6e-129 465.3 427 59.3
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 7.4e-129 464.9 474 57.8
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 1.3e-128 464.2 382 64.9
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 1.3e-128 464.2 400 62.5
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 6.2e-128 461.8 472 57.6
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 1.1e-127 461.1 405 61.7
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 9.0e-127 458.0 393 61.3
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.2e-126 457.6 411 61.1
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 2.6e-126 456.4 480 56.0
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 3.4e-126 456.1 486 55.6
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 3.4e-126 456.1 393 63.6
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 1.0e-125 454.5 403 60.8
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 1.7e-125 453.8 387 61.0
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 2.9e-125 453.0 492 53.0
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 8.4e-125 451.4 409 60.9
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 1.4e-124 450.7 502 53.2
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 4.2e-124 449.1 398 61.8
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 9.3e-124 448.0 477 58.1
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 1.6e-123 447.2 490 56.5
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 3.5e-123 446.0 489 54.0
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 6.0e-123 445.3 481 55.1
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.3e-122 444.1 405 60.5
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 1.3e-122 444.1 394 60.4
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 1.8e-122 443.7 477 53.9
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 1.8e-122 443.7 490 54.7
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 2.3e-122 443.4 399 58.6
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 3.0e-122 443.0 405 60.2
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.5e-121 440.7 405 58.8
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 1.5e-121 440.7 383 60.3
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 3.3e-121 439.5 485 56.5
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 3.3e-121 439.5 486 53.3
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.3e-120 437.6 405 59.8
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 4.8e-120 435.6 413 57.4
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 6.2e-120 435.3 477 52.4
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 6.2e-120 435.3 415 57.1
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 1.1e-119 434.5 383 58.2
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 1.8e-119 433.7 377 61.0
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 2.4e-119 433.3 477 52.4
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 2.4e-119 433.3 397 58.2
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 4.5e-118 429.1 377 58.1
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 7.6e-118 428.3 414 55.8
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.0e-117 427.9 383 60.1
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.3e-117 427.6 411 58.6
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.2e-117 426.8 409 56.5
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 6.5e-117 425.2 395 58.7
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.4e-116 424.1 381 58.5
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.9e-116 423.7 383 59.5
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.5e-116 423.3 470 54.3
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 3.2e-116 422.9 407 57.5
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 7.2e-116 421.8 376 60.6
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 7.2e-116 421.8 455 51.9
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 9.3e-116 421.4 396 57.1
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 1.2e-115 421.0 414 56.0
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.8e-114 417.2 414 56.5
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.8e-114 417.2 475 53.3
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 1.1e-113 414.5 377 58.6
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.9e-113 413.7 435 54.0
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 2.2e-112 410.2 401 56.1
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 2.8e-112 409.8 386 58.0
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 4.8e-112 409.1 398 57.3
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 4.8e-112 409.1 398 57.3
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 6.3e-112 408.7 385 56.9
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 8.2e-112 408.3 414 55.1
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.4e-111 407.5 387 56.8
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.8e-111 407.1 313 66.1
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 5.3e-111 405.6 376 57.2
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 5.3e-111 405.6 471 51.8
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 9.0e-111 404.8 388 61.3
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 1.2e-110 404.4 404 54.0
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.0e-110 403.7 401 55.4
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 2.0e-110 403.7 465 50.1
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 4.5e-110 402.5 379 56.2
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 2.9e-109 399.8 484 50.2
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 3.8e-109 399.4 411 54.7
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 8.5e-109 398.3 394 56.6
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 4.2e-108 396.0 328 62.2
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 5.5e-108 395.6 411 53.5
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 7.2e-108 395.2 402 54.5
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 2.1e-107 393.7 478 49.2
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 2.1e-107 393.7 407 54.3
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 2.7e-107 393.3 381 55.9
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 4.6e-107 392.5 381 55.6
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 4.6e-107 392.5 400 54.0
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 6.1e-107 392.1 376 55.9
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.0e-102 377.1 395 53.2
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 3.8e-101 372.9 383 52.7
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.1e-100 371.3 405 49.6
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.2e-100 369.8 284 64.8
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 2.7e-99 366.7 470 46.2
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 3.7e-96 356.3 282 68.4
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 1.4e-95 354.4 378 50.0
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 7.2e-92 342.0 314 58.6
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 1.3e-80 304.7 383 44.4
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 2.9e-77 293.5 268 59.3
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 7.3e-68 262.3 234 55.1
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 1.3e-64 251.5 192 69.8
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.9e-55 221.1 444 34.7
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 2.5e-52 210.7 192 60.9
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 6.2e-51 206.1 241 44.4
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 1.8e-42 177.9 274 40.9
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.3e-42 177.6 133 72.9
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 9.9e-41 172.2 144 62.5
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.1e-39 168.7 128 71.9
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 2.3e-37 161.0 142 66.2
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 8.6e-37 159.1 126 68.3
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 2.5e-36 157.5 340 35.0
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 1.5e-28 131.7 234 36.3
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 3.6e-27 127.1 118 53.4
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 2.9e-24 117.5 100 55.0
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 1.2e-22 112.1 337 29.1
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 2.8e-19 100.9 145 42.1
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 2.8e-19 100.9 145 42.1
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 3.4e-17 94.0 91 52.7
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 5.8e-17 93.2 100 52.0
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 1.2e-09 68.9 106 45.3
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.1e-07 62.4 247 28.3
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 3.2e-07 60.8 53 62.3
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 7.1e-07 59.7 71 39.4
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 2.7e-06 57.8 48 58.3


User provided reference genes

Program Settings