Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 3075.0 1534 100.0
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 2560.4 1535 84.4
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 2369.3 1476 79.3
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 2352.0 1559 75.8
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 2310.8 1536 75.1
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 2098.2 1530 68.7
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 2017.3 1535 65.5
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1967.6 1531 65.1
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1925.6 1527 63.9
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1921.4 1531 63.7
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1909.8 1534 62.8
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1900.9 1552 63.9
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1870.1 1536 61.1
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1860.9 1536 62.2
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1843.2 1536 61.5
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1837.4 1562 60.5
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1823.5 1535 61.2
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1818.1 1536 58.8
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1815.8 1537 60.0
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1813.5 1532 60.1
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1810.8 1535 60.5
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1802.3 1537 60.5
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1801.2 1536 58.4
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1800.0 1526 59.9
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1797.7 1539 60.4
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1795.8 1540 59.7
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1787.3 1535 60.7
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1786.5 1524 60.5
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1775.4 1640 56.2
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1770.7 1530 59.9
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1770.7 1531 59.8
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1765.4 1525 60.1
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1760.7 1543 59.5
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1749.9 1535 57.9
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1746.9 1531 58.5
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1738.4 1526 58.4
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1735.3 1535 58.4
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1728.0 1530 58.6
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1713.4 1536 58.2
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1699.9 1534 57.7
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1692.9 1531 57.3
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1688.7 1534 57.4
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1688.3 1531 57.9
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1674.1 1531 56.1
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1673.7 1530 56.2
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1671.4 1531 56.3
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1670.2 1530 56.8
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1668.3 1527 57.7
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1666.7 1536 54.6
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1663.7 1457 59.0
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1657.1 1528 56.5
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1656.0 1535 56.5
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1655.2 1537 56.0
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1650.2 1532 54.3
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1649.0 1551 55.5
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1649.0 1551 55.5
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1634.0 1526 55.5
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1630.9 1531 54.1
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1611.7 1319 61.9
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1604.7 1203 67.1
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1585.5 1552 52.9
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1579.7 1535 53.6
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1568.9 1415 58.8
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1534.6 1054 73.0
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1523.8 1487 53.1
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1513.0 1239 62.1
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1496.5 1537 51.9
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1480.3 1534 49.7
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1472.6 1539 51.1
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1463.4 1539 50.6
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1459.9 1538 50.7
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1458.0 1544 50.5
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1458.0 1777 45.5
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1456.4 1542 50.4
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1456.0 1540 50.5
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1448.3 1579 50.2
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1446.0 1546 50.1
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1444.5 1104 66.2
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1443.3 1134 64.0
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1441.4 1573 49.5
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1437.9 1547 50.0
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1437.6 1575 49.3
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1435.2 1579 49.3
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1429.5 1539 50.7
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1414.8 1535 49.9
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1385.5 1540 50.6
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1380.9 1581 49.0
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1352.4 1161 59.1
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1308.9 1321 52.5
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1304.3 984 66.6
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1262.3 1124 58.8
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1251.5 1542 44.9
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.8e-285 986.9 1142 47.5
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.5e-263 914.1 1171 44.0
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 2.5e-255 886.7 1562 35.8
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.1e-254 883.6 602 72.8
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 9.9e-252 874.8 1554 35.6
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 4.9e-251 872.5 994 47.4
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.3e-240 837.8 1566 35.4
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 4.3e-231 806.2 1026 44.7
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 5.6e-231 805.8 602 67.3
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 8.7e-224 781.9 574 67.4
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 2.5e-207 727.2 572 63.3
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 7.7e-204 715.7 659 56.8
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 1.0e-203 715.3 1051 41.4
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 1.9e-202 711.1 1424 34.0
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 3.6e-201 706.8 1056 41.4
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.5e-199 701.4 627 58.5
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 2.0e-199 701.0 1057 41.2
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 3.1e-165 587.4 578 53.8
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 5.4e-157 560.1 1035 37.7
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 7.3e-154 549.7 477 60.6
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 6.0e-140 503.4 566 46.8
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.6e-132 478.8 577 47.3
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 4.3e-130 470.7 530 49.4
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-106 390.6 997 29.3
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 7.4e-106 390.2 505 42.6
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 9.0e-96 356.7 456 43.0
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 7.4e-90 337.0 560 35.9
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 3.7e-89 334.7 325 55.1
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 1.1e-88 333.2 396 46.2
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.0e-87 328.9 319 50.5
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.1e-85 323.2 859 30.3
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 1.4e-85 322.8 458 44.3
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 1.4e-83 316.2 438 45.9
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 3.7e-81 308.1 493 38.3
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 9.1e-80 303.5 332 50.0
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.0e-78 300.1 220 65.5
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 2.1e-76 292.4 276 55.8
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 3.9e-75 288.1 388 41.5
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.5e-74 286.2 356 42.4
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.3e-73 283.1 212 64.6
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.1e-72 278.1 365 41.6
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 4.2e-69 268.1 252 56.3
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 4.1e-64 251.5 255 54.9
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.8e-59 236.1 192 57.8
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 7.5e-58 230.7 296 45.9
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 4.8e-57 228.0 284 45.4
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.8e-49 202.2 320 39.1
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 3.1e-48 198.7 199 53.8
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 9.5e-45 187.2 195 51.8
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 1.6e-44 186.4 187 55.6
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 6.8e-43 181.0 200 50.5
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.7e-41 175.3 129 63.6
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 4.9e-41 174.9 395 33.4
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 2.3e-38 166.0 124 63.7
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 1.5e-37 163.3 206 43.7
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 6.8e-35 154.5 127 57.5
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.5e-34 153.3 110 60.9
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 7.5e-34 151.0 149 51.7
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 1.3e-33 150.2 116 65.5
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 2.3e-30 139.4 116 59.5
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 1.1e-29 137.1 125 57.6
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 3.2e-24 119.0 103 62.1
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 1.6e-23 116.7 103 61.2
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 2.0e-18 99.8 675 21.9
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 5.6e-13 81.6 61 59.0
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 9.6e-13 80.9 262 26.3
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 8.4e-09 67.8 60 55.0
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.4e-08 67.0 42 71.4
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 3.2e-08 65.9 182 29.7
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 4.2e-08 65.5 80 46.2
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 6.6e-06 58.2 44 59.1


User provided reference genes

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