Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 3.4e-67 258.1 119 100.0
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 8.6e-63 243.4 116 95.7
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 4.3e-62 241.1 115 96.5
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 5.6e-62 240.7 114 95.6
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 5.6e-62 240.7 116 94.8
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 9.6e-62 240.0 119 91.6
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 1.2e-61 239.6 116 94.0
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 2.1e-61 238.8 111 97.3
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 2.8e-61 238.4 117 94.0
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 4.7e-61 237.7 116 94.0
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 4.7e-61 237.7 119 92.4
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 1.1e-60 236.5 112 95.5
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 1.1e-60 236.5 112 95.5
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 1.1e-60 236.5 112 95.5
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.4e-60 236.1 119 93.3
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 1.8e-60 235.7 116 92.2
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 3.1e-60 235.0 116 93.1
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 3.1e-60 235.0 116 93.1
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 3.1e-60 235.0 116 93.1
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 4.0e-60 234.6 116 92.2
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 6.8e-60 233.8 116 92.2
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 6.8e-60 233.8 112 94.6
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 8.9e-60 233.4 116 92.2
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 1.5e-59 232.6 119 89.1
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 3.4e-59 231.5 113 93.8
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 4.4e-59 231.1 116 88.8
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 4.4e-59 231.1 116 88.8
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 5.8e-59 230.7 119 89.1
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 5.8e-59 230.7 116 88.8
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 9.9e-59 229.9 116 88.8
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 1.7e-58 229.2 116 87.1
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 4.9e-58 227.6 118 85.6
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 6.4e-58 227.3 114 90.4
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 6.4e-58 227.3 116 87.9
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 8.4e-58 226.9 118 86.4
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 8.4e-58 226.9 119 88.2
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 4.2e-57 224.6 119 87.4
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 5.4e-57 224.2 112 89.3
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 7.1e-57 223.8 119 86.6
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 7.1e-57 223.8 112 89.3
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 9.3e-57 223.4 112 91.1
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 9.3e-57 223.4 119 86.6
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 9.3e-57 223.4 112 90.2
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.2e-56 223.0 116 87.9
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 1.6e-56 222.6 113 90.3
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.6e-56 222.6 118 83.9
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.6e-56 222.6 118 83.9
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.1e-56 222.2 116 87.1
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 2.7e-56 221.9 125 84.8
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 3.5e-56 221.5 116 83.6
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 4.6e-56 221.1 118 82.2
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 4.6e-56 221.1 112 88.4
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 4.6e-56 221.1 119 85.7
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 6.0e-56 220.7 116 82.8
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 6.0e-56 220.7 116 82.8
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 7.8e-56 220.3 116 83.6
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 7.8e-56 220.3 116 82.8
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 1.0e-55 219.9 116 82.8
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.0e-55 219.9 110 93.6
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 1.3e-55 219.5 119 85.7
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.3e-55 219.5 112 87.5
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 5.1e-55 217.6 116 82.8
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 5.1e-55 217.6 116 82.8
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 5.1e-55 217.6 116 81.9
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 5.1e-55 217.6 113 88.5
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 5.1e-55 217.6 115 85.2
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 5.1e-55 217.6 112 86.6
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 6.6e-55 217.2 116 81.9
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 6.6e-55 217.2 116 81.9
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 6.6e-55 217.2 116 81.9
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 6.6e-55 217.2 116 81.9
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 8.7e-55 216.9 116 81.0
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 8.7e-55 216.9 115 85.2
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.1e-54 216.5 116 81.9
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 1.1e-54 216.5 110 86.4
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 1.5e-54 216.1 112 83.9
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 1.9e-54 215.7 112 84.8
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 3.3e-54 214.9 116 80.2
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 3.3e-54 214.9 116 81.0
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 3.3e-54 214.9 118 79.7
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 4.3e-54 214.5 113 85.8
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 5.6e-54 214.2 119 79.8
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 9.6e-54 213.4 119 83.2
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 9.6e-54 213.4 116 81.9
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 1.6e-53 212.6 119 79.0
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 1.6e-53 212.6 119 79.0
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 1.6e-53 212.6 119 79.0
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 1.6e-53 212.6 119 83.2
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.6e-53 212.6 119 83.2
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.6e-53 212.6 119 83.2
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.6e-53 212.6 119 83.2
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.6e-53 212.6 119 83.2
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 2.8e-53 211.8 116 80.2
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 3.6e-53 211.5 114 81.6
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 1.1e-52 209.9 115 80.0
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.8e-52 209.1 152 67.8
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 9.0e-52 206.8 111 84.7
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 1.2e-51 206.5 174 60.3
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 1.2e-51 206.5 99 93.9
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 2.6e-51 205.3 110 82.7
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 2.6e-51 205.3 110 82.7
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 2.6e-51 205.3 119 75.6
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 4.4e-51 204.5 95 96.8
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 5.8e-51 204.1 112 82.1
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 5.8e-51 204.1 110 80.0
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 1.3e-50 203.0 110 84.5
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 2.9e-50 201.8 117 76.1
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 8.4e-50 200.3 119 80.7
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 1.4e-49 199.5 99 91.9
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 1.9e-49 199.1 110 80.0
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 1.9e-49 199.1 110 80.0
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 1.9e-49 199.1 99 88.9
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 1.6e-48 196.1 99 89.9
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 1.6e-48 196.1 96 91.7
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 2.7e-48 195.3 99 87.9
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.3e-47 193.0 118 72.0
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.3e-47 193.0 118 72.0
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 2.3e-47 192.2 110 77.3
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 6.6e-47 190.7 98 88.8
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 6.6e-47 190.7 113 72.6
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 6.6e-47 190.7 119 69.7
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 3.6e-45 184.9 147 59.2
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 6.2e-45 184.1 98 87.8
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 3.1e-44 181.8 127 66.9
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.5e-43 179.5 107 70.1
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 3.8e-42 174.9 110 65.5
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 1.4e-41 172.9 116 65.5
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 9.3e-41 170.2 150 57.3
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 9.3e-41 170.2 108 67.6
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 1.2e-40 169.9 107 66.4
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.6e-40 169.5 97 76.3
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 2.1e-40 169.1 82 92.7
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 2.3e-39 165.6 85 85.9
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 5.1e-39 164.5 80 90.0
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 2.5e-38 162.2 78 93.6
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 2.1e-37 159.1 84 85.7
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 1.1e-36 156.8 75 89.3
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 4.9e-34 147.9 78 83.3
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 1.1e-33 146.7 81 80.2
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 3.9e-31 138.3 92 63.0
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 1.1e-30 136.7 101 53.5
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 5.7e-30 134.4 103 69.9
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 3.7e-29 131.7 102 68.6
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 1.2e-27 126.7 105 49.5
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.7e-24 115.5 81 72.8
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.3e-23 112.5 82 68.3
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 3.9e-23 111.7 93 60.2
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 3.9e-23 111.7 93 60.2
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 3.9e-23 111.7 93 60.2
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 3.4e-19 98.6 154 42.2
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 7.7e-19 97.4 58 72.4
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 1.3e-18 96.7 60 75.0
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 6.5e-18 94.4 99 41.4
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 4.2e-17 91.7 88 44.3
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 5.1e-15 84.7 78 60.3
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 3.7e-13 78.6 41 87.8
Cpa.g.sc887.1 Carica papaya HOM05D004582 ORTHO05D005507 8.2e-13 77.4 38 94.7
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 1.8e-12 76.3 83 41.0
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.4e-09 66.6 81 49.4


User provided reference genes

Program Settings