Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00636 Vaccinium macrocarpon HOM05D003362 ORTHO05D003783 7.4e-119 430.6 231 100.0
Rhsim03G0098600 Rhododendron simsii HOM05D003362 ORTHO05D003783 6.6e-35 151.8 136 62.5
CSS0028549 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 8.1e-25 118.2 127 52.0
CSS0023458 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 2.4e-24 116.7 125 52.0
CSS0050436 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 5.3e-24 115.5 125 52.0
vmacro07205 Vaccinium macrocarpon HOM05D003362 ORTHO05D003783 5.3e-24 115.5 127 52.0
CAN.G184.19 Capsicum annuum HOM05D003362 ORTHO05D003783 6.9e-24 115.2 137 49.6
MSTRG.21607 Avicennia marina HOM05D003362 ORTHO05D003783 9.0e-24 114.8 139 47.5
Actinidia38221 Actinidia chinensis HOM05D003362 ORTHO05D003783 1.5e-23 114.0 133 51.1
Rhsim01G0013100 Rhododendron simsii HOM05D003362 ORTHO05D003783 4.5e-23 112.5 125 51.2
CiPaw.01G280400 Carya illinoinensis HOM05D003362 ORTHO05D003783 1.7e-22 110.5 142 46.5
SalBow1G4850 Salvia bowleyana HOM05D003362 ORTHO05D003783 1.7e-22 110.5 133 48.9
Nn2g12834 Nelumbo nucifera HOM05D003362 ORTHO05D003783 3.8e-22 109.4 125 49.6
Sopen05g006090 Solanum pennellii HOM05D003362 ORTHO05D003783 4.9e-22 109.0 133 48.1
PGR142G2050 Punica granatum HOM05D003362 ORTHO05D003783 6.4e-22 108.6 133 45.1
Nitab4.5_0005313g0010 Nicotiana tabacum HOM05D003362 ORTHO05D003783 1.1e-21 107.8 165 44.2
Cfa001554 Carpinus fangiana HOM05D003362 ORTHO05D003783 1.4e-21 107.5 139 45.3
Dinv31395 Davidia involucrata HOM05D003362 ORTHO05D003783 1.4e-21 107.5 125 49.6
Migut.D00159 Erythranthe guttata HOM05D003362 ORTHO05D003783 1.4e-21 107.5 133 46.6
SalBow3G2785 Salvia bowleyana HOM05D003362 ORTHO05D003783 1.4e-21 107.5 133 47.4
SalBow3G3107 Salvia bowleyana HOM05D003362 ORTHO05D003783 1.4e-21 107.5 133 47.4
DCAR_027694 Daucus carota HOM05D003362 ORTHO05D003783 1.9e-21 107.1 118 46.6
Solyc05g010320.4 Solanum lycopersicum HOM05D003362 ORTHO05D003783 1.9e-21 107.1 133 46.6
TWI38G1411 Tripterygium wilfordii HOM05D003362 ORTHO05D003783 3.2e-21 106.3 130 46.9
BcaC07g39836 Brassica carinata HOM05D003362 ORTHO05D003783 4.2e-21 105.9 138 44.2
Cc02_g08570 Coffea canephora HOM05D003362 ORTHO05D003783 4.2e-21 105.9 142 47.2
MD01G1117800 Malus domestica HOM05D003362 ORTHO05D003783 4.2e-21 105.9 135 45.9
Gohir.A13G020400 Gossypium hirsutum HOM05D003362 ORTHO05D003783 5.5e-21 105.5 127 48.8
Nitab4.5_0000027g0470 Nicotiana tabacum HOM05D003362 ORTHO05D003783 5.5e-21 105.5 137 48.2
Sc06g0001890 Simmondsia chinensis HOM05D003362 ORTHO05D003783 5.5e-21 105.5 131 46.6
unitig_0.g651 Utricularia gibba HOM05D003362 ORTHO05D003783 5.5e-21 105.5 192 39.1
VMungo0720G3152 Vigna mungo HOM05D003362 ORTHO05D003783 5.5e-21 105.5 133 47.4
C08p30380 Brassica napus HOM05D003362 ORTHO05D003783 7.1e-21 105.1 138 44.2
BolC8t50659H Brassica oleracea HOM05D003362 ORTHO05D003783 7.1e-21 105.1 138 44.2
FvH4_7g20870 Fragaria vesca HOM05D003362 ORTHO05D003783 9.3e-21 104.8 138 44.9
FAN03G1303 Fragaria x ananassa HOM05D003362 ORTHO05D003783 9.3e-21 104.8 138 44.9
FAN10G3261 Fragaria x ananassa HOM05D003362 ORTHO05D003783 9.3e-21 104.8 138 44.9
Glyma.20G241700 Glycine max HOM05D003362 ORTHO05D003783 9.3e-21 104.8 137 45.3
Gorai.013G023400 Gossypium raimondii HOM05D003362 ORTHO05D003783 9.3e-21 104.8 127 47.2
MD01G1118000 Malus domestica HOM05D003362 ORTHO05D003783 9.3e-21 104.8 135 44.4
Gohir.D13G021000 Gossypium hirsutum HOM05D003362 ORTHO05D003783 1.2e-20 104.4 127 47.2
Hma1.2p1_0629F.1_g192100 Hydrangea macrophylla HOM05D003362 ORTHO05D003783 1.2e-20 104.4 129 47.3
Hund19984 Selenicereus undatus HOM05D003362 ORTHO05D003783 1.2e-20 104.4 141 41.8
EL10Ac2g03488 Beta vulgaris HOM05D003362 ORTHO05D003783 1.6e-20 104.0 138 44.2
A09p48130 Brassica napus HOM05D003362 ORTHO05D003783 1.6e-20 104.0 138 44.2
BraA09t40267Z Brassica rapa HOM05D003362 ORTHO05D003783 1.6e-20 104.0 138 44.2
Ah.06g183020 Amaranthus hybridus HOM05D003362 ORTHO05D003783 2.1e-20 103.6 145 42.1
Carub.0005s2175 Capsella rubella HOM05D003362 ORTHO05D003783 2.1e-20 103.6 138 43.5
Duzib114G0926 Durio zibethinus HOM05D003362 ORTHO05D003783 2.1e-20 103.6 127 47.2
Phvul.002G276500 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 2.1e-20 103.6 133 45.1
BcaB02g07695 Brassica carinata HOM05D003362 ORTHO05D003783 2.7e-20 103.2 138 44.9
FAN06G2019 Fragaria x ananassa HOM05D003362 ORTHO05D003783 2.7e-20 103.2 138 44.2
HanXRQChr15g0496871 Helianthus annuus HOM05D003362 ORTHO05D003783 2.7e-20 103.2 146 42.5
Potri.010G213000 Populus trichocarpa HOM05D003362 ORTHO05D003783 2.7e-20 103.2 131 47.3
Prupe.2G225200 Prunus persica HOM05D003362 ORTHO05D003783 2.7e-20 103.2 133 45.1
Aqoxy2G01950 Aquilegia oxysepala HOM05D003362 ORTHO05D003783 3.5e-20 102.8 135 44.4
QL08p057674 Quercus lobata HOM05D003362 ORTHO05D003783 3.5e-20 102.8 133 45.1
MD07G1186300 Malus domestica HOM05D003362 ORTHO05D003783 4.6e-20 102.4 135 44.4
Sp5g07300 Schrenkiella parvula HOM05D003362 ORTHO05D003783 6.0e-20 102.1 137 43.8
Sabra10G0164900 Salix brachista HOM05D003362 ORTHO05D003783 7.9e-20 101.7 132 47.7
arahy.Tifrunner.gnm1.ann1.TJ3PHW Arachis hypogaea HOM05D003362 ORTHO05D003783 1.0e-19 101.3 133 46.6
arahy.Tifrunner.gnm1.ann1.VJQ7J1 Arachis hypogaea HOM05D003362 ORTHO05D003783 1.0e-19 101.3 133 46.6
A07p22450 Brassica napus HOM05D003362 ORTHO05D003783 1.0e-19 101.3 138 43.5
BraA07t29921Z Brassica rapa HOM05D003362 ORTHO05D003783 1.0e-19 101.3 138 43.5
CANSAT21G2171 Cannabis sativa HOM05D003362 ORTHO05D003783 1.0e-19 101.3 137 43.8
Thhalv10010658m.g Eutrema salsugineum HOM05D003362 ORTHO05D003783 1.0e-19 101.3 138 43.5
Phvul.007G008500 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 1.0e-19 101.3 133 45.9
GSVIVG01032619001 Vitis vinifera HOM05D003362 ORTHO05D003783 1.0e-19 101.3 125 46.4
AL5G36240 Arabidopsis lyrata HOM05D003362 ORTHO05D003783 1.3e-19 100.9 138 43.5
BolC6t37453H Brassica oleracea HOM05D003362 ORTHO05D003783 1.3e-19 100.9 138 43.5
PSO384G0434 Papaver somniferum HOM05D003362 ORTHO05D003783 1.3e-19 100.9 145 43.4
AUR62020547 Chenopodium quinoa HOM05D003362 ORTHO05D003783 1.8e-19 100.5 139 43.2
Ca_11318_v3 Cicer arietinum L. HOM05D003362 ORTHO05D003783 1.8e-19 100.5 135 44.4
COL.COLO4_10881 Corchorus olitorius HOM05D003362 ORTHO05D003783 1.8e-19 100.5 135 43.7
PSO339G0073 Papaver somniferum HOM05D003362 ORTHO05D003783 1.8e-19 100.5 130 46.2
Atru.chr12.582 Acer truncatum HOM05D003362 ORTHO05D003783 2.3e-19 100.1 135 43.0
RcHm_v2.0_Chr1g0365111 Rosa chinensis HOM05D003362 ORTHO05D003783 2.3e-19 100.1 138 43.5
TPR.G10384 Trifolium pratense HOM05D003362 ORTHO05D003783 2.3e-19 100.1 135 43.7
Ciclev10032697m.g Citrus clementina HOM05D003362 ORTHO05D003783 3.0e-19 99.8 156 41.7
Sopen05g006080 Solanum pennellii HOM05D003362 ORTHO05D003783 3.0e-19 99.8 139 43.9
THA.LOC104825165 Tarenaya hassleriana HOM05D003362 ORTHO05D003783 3.0e-19 99.8 133 42.1
Actinidia38220 Actinidia chinensis HOM05D003362 ORTHO05D003783 3.9e-19 99.4 133 43.6
AT3G55120 Arabidopsis thaliana HOM05D003362 ORTHO05D003783 5.1e-19 99.0 138 43.5
MD01G1118100 Malus domestica HOM05D003362 ORTHO05D003783 6.7e-19 98.6 135 42.2
BcaC08g44726 Brassica carinata HOM05D003362 ORTHO05D003783 8.7e-19 98.2 138 42.0
C06p22640 Brassica napus HOM05D003362 ORTHO05D003783 8.7e-19 98.2 138 42.0
CARHR165150 Cardamine hirsuta HOM05D003362 ORTHO05D003783 1.1e-18 97.8 138 41.3
SGA_v2.0_scaffold2G01424 Striga asiatica HOM05D003362 ORTHO05D003783 1.1e-18 97.8 131 45.0
AUR62015655 Chenopodium quinoa HOM05D003362 ORTHO05D003783 1.5e-18 97.4 135 43.0
MBI14_g16292_MAGBIO Magnolia biondii HOM05D003362 ORTHO05D003783 1.5e-18 97.4 125 44.0
Manes.07G107200 Manihot esculenta HOM05D003362 ORTHO05D003783 1.5e-18 97.4 133 42.1
Solyc05g010310.3 Solanum lycopersicum HOM05D003362 ORTHO05D003783 1.5e-18 97.4 139 43.2
Aa31LG10G10040 Aethionema arabicum HOM05D003362 ORTHO05D003783 1.9e-18 97.1 148 39.2
Eucgr.F03816 Eucalyptus grandis HOM05D003362 ORTHO05D003783 1.9e-18 97.1 130 42.3
Peaxi162Scf00006g00088 Petunia axillaris HOM05D003362 ORTHO05D003783 1.9e-18 97.1 131 44.3
Lj5g0014981 Lotus japonicus HOM05D003362 ORTHO05D003783 3.3e-18 96.3 133 43.6
MD07G1186400 Malus domestica HOM05D003362 ORTHO05D003783 3.3e-18 96.3 129 42.6
Thecc.10G060600 Theobroma cacao HOM05D003362 ORTHO05D003783 5.6e-18 95.5 124 43.5
Lalb_Chr02g0143921 Lupinus albus HOM05D003362 ORTHO05D003783 7.4e-18 95.1 133 42.1
Medtr1g115870 Medicago truncatula HOM05D003362 ORTHO05D003783 7.4e-18 95.1 135 42.2
ECA232G4190 Erigeron canadensis HOM05D003362 ORTHO05D003783 9.6e-18 94.7 133 42.1
Medtr1g115890 Medicago truncatula HOM05D003362 ORTHO05D003783 9.6e-18 94.7 127 44.1
Lj1A930T84 Lonicera japonica HOM05D003362 ORTHO05D003783 1.3e-17 94.4 133 40.6
CDE07G1335 Ceratophyllum demersum HOM05D003362 ORTHO05D003783 2.1e-17 93.6 132 42.4
PGR044G1755 Punica granatum HOM05D003362 ORTHO05D003783 2.1e-17 93.6 132 41.7
Sed0018943 Sechium edule HOM05D003362 ORTHO05D003783 2.1e-17 93.6 136 41.9
Zm00001eb062510 Zea mays HOM05D003362 ORTHO05D003783 2.1e-17 93.6 124 46.8
Psat6g237840 Pisum sativum HOM05D003362 ORTHO05D003783 2.8e-17 93.2 135 41.5
CARHR165140 Cardamine hirsuta HOM05D003362 ORTHO05D003783 1.4e-16 90.9 140 39.3
HanXRQChr15g0496901 Helianthus annuus HOM05D003362 ORTHO05D003783 1.4e-16 90.9 142 39.4
PGR044G1348 Punica granatum HOM05D003362 ORTHO05D003783 1.4e-16 90.9 143 39.2
TAR623G0942 Trochodendron aralioides HOM05D003362 ORTHO05D003783 1.4e-16 90.9 113 45.1
Eucgr.J01152 Eucalyptus grandis HOM05D003362 ORTHO05D003783 2.4e-16 90.1 133 39.8
HanXRQChr15g0496881 Helianthus annuus HOM05D003362 ORTHO05D003783 2.4e-16 90.1 160 36.9
Medtr1g115840 Medicago truncatula HOM05D003362 ORTHO05D003783 6.9e-16 88.6 139 42.4
Medtr1g115850 Medicago truncatula HOM05D003362 ORTHO05D003783 2.6e-15 86.7 139 41.7
TPR.G10424 Trifolium pratense HOM05D003362 ORTHO05D003783 2.6e-15 86.7 145 41.4
Psat6g237920 Pisum sativum HOM05D003362 ORTHO05D003783 3.4e-15 86.3 124 44.4
Glyma.10G292200 Glycine max HOM05D003362 ORTHO05D003783 7.6e-15 85.1 146 39.7
Lsat_1_v5_gn_9_66221 Lactuca sativa HOM05D003362 ORTHO05D003783 7.6e-15 85.1 138 37.7
Glyma.20G241600 Glycine max HOM05D003362 ORTHO05D003783 1.0e-14 84.7 146 39.7
AT5G66220 Arabidopsis thaliana HOM05D003362 ORTHO05D003783 1.3e-14 84.3 129 38.8
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 1.3e-14 84.3 129 38.8
Lalb_Chr06g0164121 Lupinus albus HOM05D003362 ORTHO05D003783 1.7e-14 84.0 133 39.8
SEGI_22659 Sequoiadendron giganteum HOM05D003362 ORTHO05D003783 2.2e-14 83.6 124 38.7
TPR.G30361 Trifolium pratense HOM05D003362 ORTHO05D003783 2.2e-14 83.6 127 41.7
VMungo0720G1901 Vigna mungo HOM05D003362 ORTHO05D003783 2.2e-14 83.6 144 41.0
Phvul.003G216600 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 3.8e-14 82.8 130 42.3
ClCG09G020280 Citrullus lanatus HOM05D003362 ORTHO05D003783 4.9e-14 82.4 132 41.7
Os03g0819600 Oryza sativa ssp. japonica HOM05D003362 ORTHO05D003783 4.9e-14 82.4 126 40.5
Thecc.10G061200 Theobroma cacao HOM05D003362 ORTHO05D003783 4.9e-14 82.4 128 39.1
CARHR281510 Cardamine hirsuta HOM05D003362 ORTHO05D003783 6.5e-14 82.0 127 39.4
Psat6g238360 Pisum sativum HOM05D003362 ORTHO05D003783 6.5e-14 82.0 127 41.7
Carub.0008s2828 Capsella rubella HOM05D003362 ORTHO05D003783 8.4e-14 81.6 130 39.2
CsaV3_5G026140 Cucumis sativus L. HOM05D003362 ORTHO05D003783 8.4e-14 81.6 129 42.6
MELO3C025484.2 Cucumis melo HOM05D003362 ORTHO05D003783 1.1e-13 81.3 132 42.4
Medtr1g115820 Medicago truncatula HOM05D003362 ORTHO05D003783 1.4e-13 80.9 142 40.1
HPP92_021163 Vanilla planifolia HOM05D003362 ORTHO05D003783 1.9e-13 80.5 124 39.5
MBI14_g22903_MAGBIO Magnolia biondii HOM05D003362 ORTHO05D003783 3.2e-13 79.7 128 36.7
VMungo0720G0350 Vigna mungo HOM05D003362 ORTHO05D003783 4.2e-13 79.3 122 41.8
BcaNung04348 Brassica carinata HOM05D003362 ORTHO05D003783 5.5e-13 79.0 138 36.2
BolC7t46557H Brassica oleracea HOM05D003362 ORTHO05D003783 5.5e-13 79.0 138 36.2
Rhsim03G0120200 Rhododendron simsii HOM05D003362 ORTHO05D003783 7.1e-13 78.6 59 66.1
CDE04G2587 Ceratophyllum demersum HOM05D003362 ORTHO05D003783 9.3e-13 78.2 91 48.4
C07p61310 Brassica napus HOM05D003362 ORTHO05D003783 1.2e-12 77.8 138 35.5
PSO407G0338 Papaver somniferum HOM05D003362 ORTHO05D003783 1.2e-12 77.8 141 38.3
Glyma.20G241500 Glycine max HOM05D003362 ORTHO05D003783 1.6e-12 77.4 132 40.9
arahy.Tifrunner.gnm1.ann1.2GDU51 Arachis hypogaea HOM05D003362 ORTHO05D003783 2.1e-12 77.0 122 41.0
Peaxi162Scf00038g01957 Petunia axillaris HOM05D003362 ORTHO05D003783 3.5e-12 76.3 104 44.2
Lj5g0021768 Lotus japonicus HOM05D003362 ORTHO05D003783 4.6e-12 75.9 142 37.3
Lj5g0004759 Lotus japonicus HOM05D003362 ORTHO05D003783 6.0e-12 75.5 135 36.3
Phvul.007G008600 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 1.3e-11 74.3 127 38.6
Sc06g0001900 Simmondsia chinensis HOM05D003362 ORTHO05D003783 3.0e-11 73.2 53 67.9
Lj5g0007558 Lotus japonicus HOM05D003362 ORTHO05D003783 3.9e-11 72.8 135 35.6
ATR0759G123 Amborella trichopoda HOM05D003362 ORTHO05D003783 5.1e-11 72.4 129 36.4
BraA09t40269Z Brassica rapa HOM05D003362 ORTHO05D003783 8.7e-11 71.6 165 33.3
AL8G45310 Arabidopsis lyrata HOM05D003362 ORTHO05D003783 1.5e-10 70.9 113 37.2
Sp2g30475 Schrenkiella parvula HOM05D003362 ORTHO05D003783 1.5e-10 70.9 126 34.1
BcaC07g39837 Brassica carinata HOM05D003362 ORTHO05D003783 2.5e-10 70.1 155 32.3
C08p30390 Brassica napus HOM05D003362 ORTHO05D003783 2.5e-10 70.1 155 32.3
BolC8t50661H Brassica oleracea HOM05D003362 ORTHO05D003783 2.5e-10 70.1 155 32.3
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 3.3e-10 69.7 54 66.7
BcaB05g22785 Brassica carinata HOM05D003362 ORTHO05D003783 4.3e-10 69.3 54 64.8
arahy.Tifrunner.gnm1.ann1.425ZXH Arachis hypogaea HOM05D003362 ORTHO05D003783 5.7e-10 68.9 109 39.4
EL10Ac2g03495 Beta vulgaris HOM05D003362 ORTHO05D003783 5.7e-10 68.9 135 31.9
BcaB05g22784 Brassica carinata HOM05D003362 ORTHO05D003783 7.4e-10 68.6 135 36.3
Nn2g10542 Nelumbo nucifera HOM05D003362 ORTHO05D003783 2.2e-09 67.0 133 33.1
Oeu057578.1 Olea europaea HOM05D003362 ORTHO05D003783 2.2e-09 67.0 48 70.8
RcHm_v2.0_Chr7g0221431 Rosa chinensis HOM05D003362 ORTHO05D003783 4.8e-09 65.9 54 63.0
ATR0759G079 Amborella trichopoda HOM05D003362 ORTHO05D003783 2.4e-08 63.5 125 36.0
Cpa.g.sc1855.1 Carica papaya HOM05D003362 ORTHO05D003783 5.3e-08 62.4 59 50.8
Thhalv10004922m.g Eutrema salsugineum HOM05D003362 ORTHO05D003783 9.0e-08 61.6 114 32.5
BcaB01g00125 Brassica carinata HOM05D003362 ORTHO05D003783 1.7e-06 57.4 56 51.8
Medtr7g027135 Medicago truncatula HOM05D003362 ORTHO05D003783 2.9e-06 56.6 74 39.2
ATR0759G124 Amborella trichopoda HOM05D003362 ORTHO05D003783 6.5e-06 55.5 124 31.5


User provided reference genes

Program Settings