Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 0.0e+00 1260.7 931 100.0
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 6.3e-217 758.4 617 78.4
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 1.0e-198 698.0 616 71.6
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 1.2e-196 691.0 617 71.8
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 3.3e-194 682.9 628 70.5
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 1.7e-190 670.6 615 68.1
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 5.2e-187 659.1 618 68.0
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 9.7e-186 654.8 616 67.9
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 6.3e-185 652.1 604 70.9
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 2.7e-183 646.7 622 67.2
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 8.5e-182 641.7 614 71.3
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 2.3e-179 633.6 579 70.1
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 3.0e-179 633.3 613 68.0
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 9.8e-178 628.2 619 68.0
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 6.3e-177 625.5 632 64.7
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 7.0e-176 622.1 576 67.0
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.2e-175 621.3 632 64.6
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 1.6e-175 620.9 636 67.1
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 3.5e-175 619.8 603 65.2
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 4.5e-175 619.4 604 67.4
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 7.7e-175 618.6 617 65.5
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 1.3e-174 617.8 630 67.3
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.7e-174 617.5 615 64.2
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.7e-174 617.5 569 67.8
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 2.2e-174 617.1 620 63.7
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 2.9e-174 616.7 639 63.7
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 8.5e-174 615.1 617 66.0
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 1.2e-172 611.3 617 66.9
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 6.1e-172 609.0 641 66.1
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 1.0e-171 608.2 602 67.8
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 1.4e-171 607.8 631 64.2
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 2.0e-170 604.0 608 64.8
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 2.0e-170 604.0 623 66.6
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 3.4e-170 603.2 620 67.1
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.4e-170 603.2 636 62.7
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 7.5e-170 602.1 595 67.6
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 9.8e-170 601.7 624 67.1
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 1.7e-169 600.9 619 64.5
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 4.9e-169 599.4 621 65.1
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 2.4e-168 597.0 626 66.0
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.2e-167 594.7 611 63.5
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 1.6e-167 594.3 596 66.4
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.6e-167 594.3 567 68.4
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 1.3e-166 591.3 641 59.9
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 1.7e-166 590.9 596 65.1
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 1.7e-166 590.9 611 67.8
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.3e-166 590.5 646 62.8
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 3.3e-165 586.6 630 62.9
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 1.2e-164 584.7 637 63.9
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 1.2e-164 584.7 616 59.3
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 2.8e-164 583.6 619 63.2
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 4.7e-164 582.8 608 66.0
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 8.0e-164 582.0 601 63.9
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 6.8e-163 578.9 618 61.8
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 8.9e-163 578.6 643 63.9
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.2e-162 578.2 656 63.3
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.6e-162 577.0 656 63.4
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 3.7e-161 573.2 502 68.7
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 3.7e-161 573.2 631 63.5
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 9.2e-160 568.5 631 59.9
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 9.2e-160 568.5 581 62.1
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.2e-159 568.2 617 63.5
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.0e-158 563.5 617 63.7
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.9e-158 563.1 617 62.6
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 6.6e-158 562.4 587 62.0
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 8.6e-158 562.0 617 62.6
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 8.6e-158 562.0 617 62.6
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 8.6e-158 562.0 601 65.7
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 8.6e-158 562.0 625 63.7
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 1.5e-157 561.2 625 63.7
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 2.5e-157 560.5 617 62.6
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 8.0e-156 555.4 630 59.5
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 4.0e-155 553.1 627 61.2
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 4.0e-155 553.1 656 61.0
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 2.6e-154 550.4 621 61.8
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 7.5e-154 548.9 612 58.2
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 7.5e-154 548.9 559 63.9
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 6.4e-153 545.8 631 59.4
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 1.9e-152 544.3 626 59.7
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 1.6e-151 541.2 613 60.5
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 6.6e-150 535.8 607 62.3
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 1.1e-149 535.0 613 59.5
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.9e-149 534.3 631 59.4
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 4.3e-149 533.1 632 58.4
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 3.1e-147 526.9 498 65.5
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 4.0e-147 526.6 501 61.5
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 6.8e-147 525.8 639 57.6
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 1.5e-146 524.6 501 62.1
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 2.0e-146 524.2 501 61.5
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 2.0e-146 524.2 501 61.5
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 5.8e-146 522.7 605 61.0
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 5.8e-146 522.7 501 61.3
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 7.5e-146 522.3 614 55.7
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.9e-144 517.7 613 59.4
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 1.2e-143 515.0 635 60.9
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 2.1e-143 514.2 635 60.9
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 2.7e-143 513.8 531 67.6
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.7e-142 511.1 631 59.7
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 3.5e-135 486.9 631 54.7
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 3.9e-134 483.4 492 61.0
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 3.8e-113 413.7 289 74.0
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 2.1e-111 407.9 455 64.0
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 1.0e-110 405.6 327 68.8
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 6.9e-107 392.9 438 68.9
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 3.2e-104 384.0 508 51.4
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 2.1e-100 371.3 493 53.8
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.2e-95 355.5 604 50.0
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 3.1e-91 340.9 214 78.0
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 6.1e-79 300.1 507 47.1
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.7e-76 292.0 554 40.3
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.8e-68 264.6 642 50.2
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 2.4e-67 261.5 179 74.9
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 5.0e-65 253.8 314 48.1
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 6.5e-65 253.4 505 45.0
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 7.2e-64 250.0 515 44.3
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 1.3e-60 239.2 334 60.5
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 1.2e-55 222.6 180 68.3
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 8.8e-54 216.5 446 40.4
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.4e-53 214.2 250 68.0
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 3.7e-52 211.1 278 55.8
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 1.7e-49 202.2 252 54.8
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 3.9e-41 174.5 209 51.7
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 5.4e-27 127.5 143 60.1
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 1.5e-24 119.4 88 68.2
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 4.7e-23 114.4 86 69.8
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 6.2e-23 114.0 70 81.4
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 9.9e-21 106.7 87 73.6
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 4.3e-16 91.3 232 33.6
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 4.7e-15 87.8 98 54.1
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 8.1e-15 87.0 48 83.3
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 2.4e-14 85.5 102 44.1
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 4.0e-14 84.7 94 57.4
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 4.9e-12 77.8 98 51.0
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 1.4e-11 76.3 156 38.5
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 6.0e-10 70.9 243 38.7
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 8.7e-09 67.0 76 69.7
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 8.1e-07 60.5 68 51.5


User provided reference genes

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