Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00334 Vaccinium macrocarpon HOM05D001331 ORTHO05D001157 0.0e+00 1216.1 647 100.0
Rhsim08G0045100 Rhododendron simsii HOM05D001331 ORTHO05D001157 5.7e-209 731.5 626 64.1
Actinidia30892 Actinidia chinensis HOM05D001331 ORTHO05D001157 1.3e-144 517.7 636 48.4
Dinv25676 Davidia involucrata HOM05D001331 ORTHO05D001157 8.7e-125 451.8 674 43.3
CSS0043172 Camellia sinensis var. sinensis HOM05D001331 ORTHO05D001157 1.5e-121 441.0 657 45.8
CSS0001891 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 9.6e-116 421.8 657 44.6
Hma1.2p1_1219F.1_g267890 Hydrangea macrophylla HOM05D001331 ORTHO05D001157 1.0e-88 332.0 571 40.3
Oeu013649.1 Olea europaea HOM05D001331 ORTHO05D001157 3.9e-85 320.1 646 37.0
TAR622G0469 Trochodendron aralioides HOM05D001331 ORTHO05D001157 1.1e-82 312.0 626 35.9
Cc07_g00590 Coffea canephora HOM05D001331 ORTHO05D001157 1.2e-78 298.5 642 35.7
GSVIVG01001820001 Vitis vinifera HOM05D001331 ORTHO05D001157 6.1e-78 296.2 655 37.1
Dinv33363 Davidia involucrata HOM05D001331 ORTHO05D001157 2.4e-74 284.3 423 43.3
TAR629G1584 Trochodendron aralioides HOM05D001331 ORTHO05D001157 2.4e-66 257.7 607 34.3
Prupe.3G302600 Prunus persica HOM05D001331 ORTHO05D001157 1.2e-65 255.4 743 31.8
Solyc02g093930.4 Solanum lycopersicum HOM05D001331 ORTHO05D001157 2.0e-65 254.6 717 30.5
CAN.G473.78 Capsicum annuum HOM05D001331 ORTHO05D001157 3.8e-64 250.4 718 31.5
Manes.15G158100 Manihot esculenta HOM05D001331 ORTHO05D001157 5.0e-64 250.0 767 30.4
Sopen02g038580 Solanum pennellii HOM05D001331 ORTHO05D001157 2.5e-63 247.7 718 30.1
CiPaw.03G052700 Carya illinoinensis HOM05D001331 ORTHO05D001157 5.5e-63 246.5 704 31.5
Nn4g22389 Nelumbo nucifera HOM05D001331 ORTHO05D001157 1.6e-62 245.0 621 32.5
MD17G1015200 Malus domestica HOM05D001331 ORTHO05D001157 8.3e-59 232.6 706 30.6
QL02p072043 Quercus lobata HOM05D001331 ORTHO05D001157 1.1e-55 222.2 752 29.9
Nitab4.5_0001031g0030 Nicotiana tabacum HOM05D001331 ORTHO05D001157 1.2e-52 212.2 652 30.7
PGSC0003DMG401020221 Solanum tuberosum HOM05D001331 ORTHO05D001157 1.3e-51 208.8 598 30.9
Potri.017G067400 Populus trichocarpa HOM05D001331 ORTHO05D001157 1.6e-49 201.8 814 27.5
FvH4_6g53040 Fragaria vesca HOM05D001331 ORTHO05D001157 1.3e-48 198.7 729 31.4
Dinv33362 Davidia involucrata HOM05D001331 ORTHO05D001157 2.5e-47 194.5 238 47.5
Migut.H00012 Erythranthe guttata HOM05D001331 ORTHO05D001157 5.6e-47 193.4 712 29.6
Peaxi162Scf00420g00454 Petunia axillaris HOM05D001331 ORTHO05D001157 7.3e-47 193.0 749 27.9
Ciclev10014314m.g Citrus clementina HOM05D001331 ORTHO05D001157 5.2e-45 186.8 796 26.0
FAN05G4290 Fragaria x ananassa HOM05D001331 ORTHO05D001157 6.8e-45 186.4 732 28.3
AUR62007258 Chenopodium quinoa HOM05D001331 ORTHO05D001157 8.9e-45 186.0 618 29.6
RcHm_v2.0_Chr2g0174821 Rosa chinensis HOM05D001331 ORTHO05D001157 3.4e-44 184.1 731 29.8
RcHm_v2.0_Chr2g0174831 Rosa chinensis HOM05D001331 ORTHO05D001157 5.8e-44 183.3 723 29.0
Sabra17G0062300 Salix brachista HOM05D001331 ORTHO05D001157 2.2e-43 181.4 781 27.8
TWI12G0610 Tripterygium wilfordii HOM05D001331 ORTHO05D001157 2.9e-43 181.0 768 30.2
FvH4_6g53050 Fragaria vesca HOM05D001331 ORTHO05D001157 4.9e-43 180.3 749 33.1
Haze_14837 Corylus avellana HOM05D001331 ORTHO05D001157 8.3e-43 179.5 628 29.9
EL10Ac5g12161 Beta vulgaris HOM05D001331 ORTHO05D001157 3.2e-42 177.6 660 27.7
FAN09G0670 Fragaria x ananassa HOM05D001331 ORTHO05D001157 5.4e-42 176.8 752 32.7
MSTRG.3092 Avicennia marina HOM05D001331 ORTHO05D001157 2.5e-39 167.9 761 25.8
SGA_v2.0_scaffold18G08222 Striga asiatica HOM05D001331 ORTHO05D001157 3.3e-39 167.5 695 28.2
Hund14414 Selenicereus undatus HOM05D001331 ORTHO05D001157 7.3e-39 166.4 626 27.5
PGR083G0547 Punica granatum HOM05D001331 ORTHO05D001157 1.6e-38 165.2 807 26.4
Aqoxy5G03473 Aquilegia oxysepala HOM05D001331 ORTHO05D001157 1.2e-36 159.1 705 26.5
MBI11_g38640_MAGBIO Magnolia biondii HOM05D001331 ORTHO05D001157 1.5e-36 158.7 641 27.1
Sed0009999 Sechium edule HOM05D001331 ORTHO05D001157 4.4e-36 157.1 712 27.0
CDE02G0478 Ceratophyllum demersum HOM05D002893 ORTHO05D003387 5.8e-36 156.8 651 26.9
Nitab4.5_0002887g0130 Nicotiana tabacum HOM05D001331 ORTHO05D001157 1.3e-35 155.6 711 26.4
arahy.Tifrunner.gnm1.ann1.ZV22RA Arachis hypogaea HOM05D001331 ORTHO05D001157 3.7e-35 154.1 727 26.3
PSO063G1524 Papaver somniferum HOM05D001331 ORTHO05D001157 1.1e-34 152.5 643 28.5
PSO782G2151 Papaver somniferum HOM05D001331 ORTHO05D001157 1.1e-34 152.5 640 28.3
ECA232G4540 Erigeron canadensis HOM05D001331 ORTHO05D001157 3.2e-34 151.0 691 25.6
Hund11264 Selenicereus undatus HOM05D001331 ORTHO05D001157 7.1e-34 149.8 644 28.1
Thecc.08G160900 Theobroma cacao HOM05D001331 ORTHO05D001157 3.5e-33 147.5 390 30.3
MD09G1015100 Malus domestica HOM05D001331 ORTHO05D001157 6.0e-33 146.7 554 28.7
CARHR213690 Cardamine hirsuta HOM05D001331 ORTHO05D001157 6.6e-32 143.3 812 23.9
ClCG11G006940 Citrullus lanatus HOM05D001331 ORTHO05D001157 6.6e-32 143.3 708 25.0
Gohir.A05G246800 Gossypium hirsutum HOM05D001331 ORTHO05D001157 2.5e-31 141.4 476 28.6
Hma1.2p1_0571F.1_g180730 Hydrangea macrophylla HOM05D001331 ORTHO05D001157 2.1e-30 138.3 176 51.1
Psat3g172880 Pisum sativum HOM05D001331 ORTHO05D001157 2.1e-30 138.3 728 24.9
CsaV3_6G001130 Cucumis sativus L. HOM05D001331 ORTHO05D001157 4.7e-30 137.1 712 25.6
Gohir.D05G248300 Gossypium hirsutum HOM05D001331 ORTHO05D001157 4.7e-30 137.1 471 27.4
Duzib093G1964 Durio zibethinus HOM05D001331 ORTHO05D001157 6.2e-30 136.7 555 27.7
Medtr7g031420 Medicago truncatula HOM05D001331 ORTHO05D001157 8.1e-30 136.3 764 25.9
BcaC08g44492 Brassica carinata HOM05D001331 ORTHO05D001157 1.8e-29 135.2 688 24.6
COL.COLO4_13736 Corchorus olitorius HOM05D001331 ORTHO05D001157 3.1e-29 134.4 863 24.4
Sc07g0004190 Simmondsia chinensis HOM05D001331 ORTHO05D001157 5.2e-29 133.7 595 26.1
HanXRQChr09g0256031 Helianthus annuus HOM05D001331 ORTHO05D001157 1.2e-28 132.5 489 30.1
AT5G40840 Arabidopsis thaliana HOM05D001331 ORTHO05D001157 2.0e-28 131.7 804 24.1
C06p19440 Brassica napus HOM05D001331 ORTHO05D001157 2.0e-28 131.7 693 25.1
Lalb_Chr22g0360501 Lupinus albus HOM05D001331 ORTHO05D001157 4.4e-28 130.6 673 25.7
Gorai.009G259300 Gossypium raimondii HOM05D001331 ORTHO05D001157 2.9e-27 127.9 567 26.3
Lsat_1_v5_gn_4_185460 Lactuca sativa HOM05D001331 ORTHO05D001157 6.4e-27 126.7 615 27.5
AL7G48780 Arabidopsis lyrata HOM05D001331 ORTHO05D001157 8.4e-27 126.3 799 23.5
Cpa.g.sc130.6 Carica papaya HOM05D023558 ORTHO05D001157 8.4e-27 126.3 285 34.0
Ah.12g054720 Amaranthus hybridus HOM05D001331 ORTHO05D001157 3.5e-25 120.9 257 33.1
Carub.0007s3466 Capsella rubella HOM05D001331 ORTHO05D001157 1.3e-24 119.0 805 23.5
Atru.chr6.2516 Acer truncatum HOM05D003058 ORTHO05D001157 5.1e-24 117.1 381 28.6
Glyma.19G087000 Glycine max HOM05D001331 ORTHO05D001157 6.6e-24 116.7 347 32.3
Sp7g01090 Schrenkiella parvula HOM05D001331 ORTHO05D001157 1.9e-23 115.2 421 28.0
Thhalv10027644m.g Eutrema salsugineum HOM05D001331 ORTHO05D001157 5.6e-23 113.6 804 22.0
C04p47650 Brassica napus HOM05D001331 ORTHO05D001157 1.6e-22 112.1 401 26.9
BcaC02g09000 Brassica carinata HOM05D001331 ORTHO05D001157 2.8e-22 111.3 401 26.4
Lj1g0014933 Lotus japonicus HOM05D001331 ORTHO05D001157 4.8e-22 110.5 410 28.0
BolC4t26366H Brassica oleracea HOM05D001331 ORTHO05D001157 6.2e-22 110.2 410 26.3
CANSAT64G1743 Cannabis sativa HOM05D001331 ORTHO05D001157 1.4e-21 109.0 917 22.6
BcaB06g27563 Brassica carinata HOM05D001331 ORTHO05D001157 1.8e-21 108.6 403 26.1
BraA04t17054Z Brassica rapa HOM05D001331 ORTHO05D001157 3.1e-21 107.8 799 22.9
HPP92_009955 Vanilla planifolia HOM05D001331 ORTHO05D001157 6.9e-21 106.7 316 28.8
A04p13890 Brassica napus HOM05D001331 ORTHO05D001157 9.0e-21 106.3 404 26.0
Phvul.001G096000 Phaseolus vulgaris HOM05D001331 ORTHO05D001157 1.5e-20 105.5 651 25.7
MELO3C008211.2 Cucumis melo HOM05D001331 ORTHO05D001157 7.6e-20 103.2 647 24.4
Glyma.16G060000 Glycine max HOM05D001331 ORTHO05D001157 1.3e-19 102.4 601 25.8
ATR0686G087 Amborella trichopoda HOM05D001331 ORTHO05D001157 2.2e-19 101.7 634 23.0
Eucgr.J02310 Eucalyptus grandis HOM05D001331 ORTHO05D001157 4.2e-18 97.4 540 24.3
Aa31LG9G820 Aethionema arabicum HOM05D001331 ORTHO05D001157 1.2e-17 95.9 746 22.8
MBI04_g27129_MAGBIO Magnolia biondii HOM05D001331 ORTHO05D001157 2.7e-17 94.7 740 23.4
Lj7A609T53 Lonicera japonica HOM05D001331 ORTHO05D001157 7.9e-17 93.2 164 38.4
Zm00001eb425440 Zea mays HOM05D001331 ORTHO05D001157 1.0e-16 92.8 558 25.3
Os04g0488100 Oryza sativa ssp. japonica HOM05D001331 ORTHO05D001157 3.9e-16 90.9 375 28.0
VMungo1383G3003 Vigna mungo HOM05D001331 ORTHO05D001157 1.5e-15 89.0 240 31.7
DCAR_021765 Daucus carota HOM05D001331 ORTHO05D001157 2.5e-15 88.2 592 25.8
SalBow1G2959 Salvia bowleyana HOM05D001331 ORTHO05D001157 2.5e-15 88.2 170 36.5
Gohir.D05G248250 Gossypium hirsutum HOM05D001331 ORTHO05D001157 3.3e-15 87.8 235 32.3
RcHm_v2.0_Chr2g0172121 Rosa chinensis HOM05D001331 ORTHO05D001157 4.3e-15 87.4 127 37.0
Atru.chr6.2517 Acer truncatum HOM05D001331 ORTHO05D001157 1.6e-14 85.5 281 29.5
DCAR_021766 Daucus carota HOM05D001331 ORTHO05D001157 5.3e-13 80.5 72 54.2
QL02p072114 Quercus lobata HOM05D001331 ORTHO05D001157 1.2e-12 79.3 199 33.2
BcaB02g07925 Brassica carinata HOM05D001331 ORTHO05D001157 7.6e-12 76.6 465 23.0
MD09G1015200 Malus domestica HOM05D001331 ORTHO05D001157 4.9e-11 73.9 69 58.0
SEGI_17466 Sequoiadendron giganteum HOM05D001331 ORTHO05D001157 5.5e-10 70.5 702 24.8
Ciclev10030924m.g Citrus clementina HOM05D001331 ORTHO05D001157 1.2e-09 69.3 311 26.4
arahy.Tifrunner.gnm1.ann1.TSCV7K Arachis hypogaea HOM05D001331 ORTHO05D001157 1.6e-09 68.9 76 42.1
BolC6t37139H Brassica oleracea HOM05D001331 ORTHO05D001157 1.8e-08 65.5 232 30.6
FAN14G3720 Fragaria x ananassa HOM05D001331 ORTHO05D001157 2.3e-08 65.1 257 29.2
Lj7A609T52 Lonicera japonica HOM05D001331 ORTHO05D001157 3.0e-08 64.7 41 75.6
BraA03t10092Z Brassica rapa HOM05D001331 ORTHO05D001157 3.9e-08 64.3 196 32.7
Dinv43910 Davidia involucrata HOM05D001331 ORTHO05D001157 3.9e-08 64.3 673 23.0
Hund03688 Selenicereus undatus HOM05D001331 ORTHO05D001157 3.9e-08 64.3 666 22.7
Migut.N01488 Erythranthe guttata HOM05D001331 ORTHO05D001157 5.1e-08 63.9 672 21.9
FAN14G1168 Fragaria x ananassa HOM05D001331 ORTHO05D001157 5.1e-08 63.9 314 28.0
Nn2g12130 Nelumbo nucifera HOM05D001331 ORTHO05D001157 5.1e-08 63.9 364 25.5
RcHm_v2.0_Chr2g0172041 Rosa chinensis HOM05D001331 ORTHO05D001157 5.1e-08 63.9 73 46.6
Dinv00376 Davidia involucrata HOM05D001331 ORTHO05D001157 8.7e-08 63.2 658 21.7
A03p07640 Brassica napus HOM05D001331 ORTHO05D001157 1.5e-07 62.4 196 32.1
C03p08880 Brassica napus HOM05D001331 ORTHO05D001157 1.9e-07 62.0 135 37.8
BolC3t13383H Brassica oleracea HOM05D001331 ORTHO05D001157 1.9e-07 62.0 135 37.8
Glyma.08G151600 Glycine max HOM05D001331 ORTHO05D001157 1.9e-07 62.0 428 22.2
BcaC04g18906 Brassica carinata HOM05D001331 ORTHO05D001157 2.5e-07 61.6 109 37.6
Duzib268G0738 Durio zibethinus HOM05D001331 ORTHO05D001157 2.5e-07 61.6 689 22.2
BcaB08g36861 Brassica carinata HOM05D001331 ORTHO05D001157 3.3e-07 61.2 97 38.1
BcaC03g18483 Brassica carinata HOM05D001331 ORTHO05D001157 3.3e-07 61.2 147 34.7
A02p03440 Brassica napus HOM05D001331 ORTHO05D001157 3.3e-07 61.2 134 35.8
BcaB01g04995 Brassica carinata HOM05D001331 ORTHO05D001157 4.3e-07 60.8 109 39.4
BcaNung02228 Brassica carinata HOM05D001331 ORTHO05D001157 5.6e-07 60.5 86 41.9
BolC2t06746H Brassica oleracea HOM05D001331 ORTHO05D001157 5.6e-07 60.5 147 32.0
BolC9t58913H Brassica oleracea HOM05D001331 ORTHO05D001157 5.6e-07 60.5 109 36.7
Thhalv10012533m.g Eutrema salsugineum HOM05D001331 ORTHO05D001157 5.6e-07 60.5 109 37.6
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 7.4e-07 60.1 135 34.8
BraA02t05316Z Brassica rapa HOM05D001331 ORTHO05D001157 7.4e-07 60.1 134 36.6
BraA10t44346Z Brassica rapa HOM05D001331 ORTHO05D001157 7.4e-07 60.1 135 34.8
Lj9C627T10 Lonicera japonica HOM05D001331 ORTHO05D001157 7.4e-07 60.1 679 23.1
RcHm_v2.0_Chr2g0172131 Rosa chinensis HOM05D001331 ORTHO05D001157 7.4e-07 60.1 91 45.1
Sp6g27890 Schrenkiella parvula HOM05D001331 ORTHO05D001157 7.4e-07 60.1 135 36.3
AL6G27160 Arabidopsis lyrata HOM05D001331 ORTHO05D001157 1.3e-06 59.3 86 40.7
AT5G16270 Arabidopsis thaliana HOM05D001331 ORTHO05D001157 1.3e-06 59.3 86 40.7
Ca_06999_v3 Cicer arietinum L. HOM05D001331 ORTHO05D001157 1.3e-06 59.3 488 23.4
Cc02_g27380 Coffea canephora HOM05D001331 ORTHO05D001157 1.3e-06 59.3 694 21.6
Sopen01g033690 Solanum pennellii HOM05D001331 ORTHO05D001157 1.3e-06 59.3 699 22.0
C02p08240 Brassica napus HOM05D001331 ORTHO05D001157 1.6e-06 58.9 134 32.8
CARHR197040 Cardamine hirsuta HOM05D001331 ORTHO05D001157 1.6e-06 58.9 86 40.7
Solyc01g086690.2 Solanum lycopersicum HOM05D001331 ORTHO05D001157 1.6e-06 58.9 699 22.0
SGA_v2.0_scaffold4G02244 Striga asiatica HOM05D001331 ORTHO05D001157 1.6e-06 58.9 661 22.5
GSVIVG01032038001 Vitis vinifera HOM05D001331 ORTHO05D001157 1.6e-06 58.9 725 21.2
CANSAT54G2734 Cannabis sativa HOM05D001331 ORTHO05D001157 2.1e-06 58.5 695 22.4
Carub.0006s1446 Capsella rubella HOM05D001331 ORTHO05D001157 2.1e-06 58.5 86 39.5
Lj5C342T6 Lonicera japonica HOM05D001331 ORTHO05D001157 2.1e-06 58.5 699 22.3
SEGI_22703 Sequoiadendron giganteum HOM05D001331 ORTHO05D001157 2.1e-06 58.5 86 39.5
AUR62018742 Chenopodium quinoa HOM05D001331 ORTHO05D001157 2.8e-06 58.2 41 61.0
MBI02_g11457_MAGBIO Magnolia biondii HOM05D001331 ORTHO05D001157 2.8e-06 58.2 445 23.1
DCAR_002143 Daucus carota HOM05D001331 ORTHO05D001157 3.7e-06 57.8 131 32.1
Dinv43475 Davidia involucrata HOM05D001331 ORTHO05D001157 3.7e-06 57.8 667 22.9
RcHm_v2.0_Chr2g0172161 Rosa chinensis HOM05D001331 ORTHO05D001157 3.7e-06 57.8 41 68.3
THA.LOC104827169 Tarenaya hassleriana HOM05D001331 ORTHO05D001157 6.2e-06 57.0 121 32.2
BraA09t40618Z Brassica rapa HOM05D001331 ORTHO05D001157 8.1e-06 56.6 333 23.7
DCAR_032395 Daucus carota HOM05D001331 ORTHO05D001157 8.1e-06 56.6 286 27.3
FAN14G4328 Fragaria x ananassa HOM05D001331 ORTHO05D001157 8.1e-06 56.6 42 69.0
MBI01_g15754_MAGBIO Magnolia biondii HOM05D001331 ORTHO05D001157 8.1e-06 56.6 693 21.1


User provided reference genes

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