Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 4.1e-240 834.3 431 100.0
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 5.6e-128 461.8 459 55.6
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 4.7e-127 458.8 462 53.2
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 7.8e-122 441.4 457 51.2
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 3.1e-118 429.5 390 54.9
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 9.9e-117 424.5 435 51.0
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.3e-116 424.1 392 54.3
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.7e-116 423.7 457 50.5
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.9e-115 420.2 434 51.8
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 3.2e-115 419.5 457 50.3
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 5.4e-115 418.7 426 50.5
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 5.4e-115 418.7 477 50.5
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 2.1e-114 416.8 467 51.4
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 6.0e-114 415.2 448 48.4
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.7e-113 413.7 456 50.2
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 3.0e-113 412.9 459 49.7
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 5.1e-113 412.1 462 51.7
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 6.6e-113 411.8 395 52.2
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 1.9e-112 410.2 504 45.6
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 5.6e-112 408.7 359 59.6
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 7.3e-112 408.3 397 51.1
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 1.3e-111 407.5 416 53.1
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 2.8e-111 406.4 451 48.6
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 6.2e-111 405.2 455 51.6
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 6.2e-111 405.2 459 48.8
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 1.1e-110 404.4 430 47.4
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 2.4e-110 403.3 437 49.4
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 4.0e-110 402.5 460 50.0
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 4.0e-110 402.5 448 51.3
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 5.3e-110 402.1 454 48.0
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 5.3e-110 402.1 397 49.6
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 6.9e-110 401.7 453 51.4
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 6.9e-110 401.7 377 54.9
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 9.0e-110 401.4 461 50.5
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 9.0e-110 401.4 425 48.0
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 9.0e-110 401.4 464 46.6
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 2.6e-109 399.8 439 47.4
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 2.6e-109 399.8 454 51.1
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 3.4e-109 399.4 419 47.5
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 5.8e-109 398.7 452 50.0
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 9.9e-109 397.9 390 51.8
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 9.9e-109 397.9 452 50.0
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 3.8e-108 396.0 455 50.1
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 3.8e-108 396.0 531 44.6
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 4.9e-108 395.6 395 49.9
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 6.4e-108 395.2 468 44.9
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 1.1e-107 394.4 486 44.9
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 1.4e-107 394.0 481 47.4
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 1.9e-107 393.7 461 47.3
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 1.9e-107 393.7 377 53.6
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 3.2e-107 392.9 376 55.6
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 4.2e-107 392.5 456 51.1
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 5.4e-107 392.1 455 51.0
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 5.4e-107 392.1 392 49.5
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 7.1e-107 391.7 450 50.9
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 1.6e-106 390.6 396 55.6
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 1.6e-106 390.6 453 50.1
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 2.1e-106 390.2 455 50.3
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 2.1e-106 390.2 458 49.1
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 7.9e-106 388.3 427 47.3
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 7.9e-106 388.3 427 47.3
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 7.9e-106 388.3 441 49.7
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 3.0e-105 386.3 434 47.0
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 3.0e-105 386.3 454 50.0
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 1.9e-104 383.6 467 48.4
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 3.3e-104 382.9 454 49.6
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 1.6e-103 380.6 455 49.9
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 2.8e-103 379.8 458 49.3
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 4.8e-103 379.0 449 46.3
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 6.2e-103 378.6 486 43.6
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 1.1e-102 377.9 424 46.9
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 1.5e-101 374.0 413 50.1
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 2.6e-101 373.2 446 49.8
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 2.2e-100 370.2 464 46.8
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 2.9e-100 369.8 435 50.3
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 1.1e-99 367.9 393 52.9
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 1.1e-99 367.9 455 48.6
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 2.5e-99 366.7 437 50.1
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 4.2e-99 365.9 466 48.1
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 5.5e-99 365.5 467 45.4
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 5.5e-99 365.5 482 46.1
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 7.1e-99 365.2 483 46.8
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 6.0e-98 362.1 361 55.7
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 2.3e-97 360.1 404 50.7
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 6.7e-97 358.6 463 46.4
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 1.1e-96 357.8 419 43.9
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 4.3e-96 355.9 449 47.9
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 2.1e-95 353.6 409 52.8
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 4.8e-95 352.4 433 45.5
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 1.1e-91 341.3 427 42.9
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 2.7e-90 336.7 447 42.3
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 1.0e-89 334.7 393 44.0
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 1.8e-89 334.0 379 47.0
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 5.1e-89 332.4 425 45.2
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 1.9e-88 330.5 434 41.7
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 3.7e-87 326.2 274 55.5
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 1.5e-85 320.9 445 44.3
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 6.5e-84 315.5 442 42.8
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 3.9e-81 306.2 370 48.1
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 5.1e-81 305.8 436 38.8
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 5.7e-80 302.4 383 46.5
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.8e-78 297.4 383 46.2
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 1.8e-78 297.4 395 46.6
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 2.4e-78 297.0 394 45.2
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 1.5e-77 294.3 329 52.0
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 1.1e-72 278.1 426 38.7
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 8.2e-71 271.9 303 48.5
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 2.0e-69 267.3 410 39.8
Cc06_g17340 Coffea canephora HOM05D005401 ORTHO05D006582 3.2e-67 260.0 246 53.7
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 2.6e-61 240.4 295 43.7
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 2.6e-61 240.4 401 39.2
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 5.0e-60 236.1 248 54.0
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 1.5e-59 234.6 397 35.3
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 8.8e-49 198.7 516 29.8
Cc00_g35900 Coffea canephora HOM05D005401 ORTHO05D006582 3.7e-47 193.4 136 64.0
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 3.4e-40 170.2 399 34.3
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 3.4e-40 170.2 399 34.3
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 4.6e-37 159.8 504 26.2
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 3.1e-33 147.1 135 53.3
CDE10G0537 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 9.2e-30 135.6 136 49.3
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 5.6e-27 126.3 160 47.5
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 6.2e-26 122.9 399 25.8
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 1.4e-25 121.7 158 45.6
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 3.4e-24 117.1 158 44.3
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 4.4e-24 116.7 153 45.8
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 5.8e-24 116.3 130 48.5
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 1.9e-22 111.3 140 43.6
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 3.2e-22 110.5 115 48.7
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 6.0e-21 106.3 81 61.7
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 1.3e-20 105.1 73 63.0
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 2.3e-20 104.4 76 63.2
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 1.2e-18 98.6 76 64.5
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 1.2e-18 98.6 357 24.4
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 5.2e-17 93.2 445 24.7
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 2.2e-15 87.8 85 45.9
Lj3g0011305 Lotus japonicus HOM05D005401 ORTHO05D006582 7.1e-14 82.8 105 41.0
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 9.2e-14 82.4 73 54.8
HPP92_006803 Vanilla planifolia HOM05D003901 ORTHO05D004511 3.5e-13 80.5 396 23.7
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 3.5e-13 80.5 84 46.4
CSS0013179 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 1.0e-12 79.0 387 23.0
CSS0026986 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 1.0e-12 79.0 387 23.0
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 2.3e-12 77.8 67 55.2
Eucgr.B03876 Eucalyptus grandis HOM05D003901 ORTHO05D004511 3.9e-12 77.0 387 21.7
MD10G1043400 Malus domestica HOM05D003901 ORTHO05D004511 4.3e-11 73.6 390 22.6
ATR0820G249 Amborella trichopoda HOM05D003901 ORTHO05D004511 9.6e-11 72.4 385 22.9
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 9.6e-11 72.4 392 23.5
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 9.6e-11 72.4 392 23.5
Oeu038978.1 Olea europaea HOM05D003901 ORTHO05D004511 1.2e-10 72.0 393 21.9
QL01p012653 Quercus lobata HOM05D003901 ORTHO05D004511 1.6e-10 71.6 378 22.2
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 2.8e-10 70.9 371 20.5
Duzib168G1973 Durio zibethinus HOM05D003901 ORTHO05D004511 2.8e-10 70.9 390 21.3
BcaB02g09805 Brassica carinata HOM05D005401 ORTHO05D006582 3.6e-10 70.5 230 27.4
Lj1C241G3 Lonicera japonica HOM05D003901 ORTHO05D004511 6.2e-10 69.7 389 21.6
AagrBONN_evm.TU.Sc2ySwM_228.5081 Anthoceros agrestis HOM05D003901 ORTHO05D004511 8.1e-10 69.3 356 21.6
Thhalv10010089m.g Eutrema salsugineum HOM05D003901 ORTHO05D004511 5.2e-09 66.6 395 22.3
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 6.8e-09 66.2 39 66.7
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 4.9e-07 60.1 159 29.6
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 8.4e-07 59.3 249 24.1
Ca_13940_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 8.4e-07 59.3 174 27.0
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 1.4e-06 58.5 243 24.7
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 1.9e-06 58.2 243 24.7
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 2.4e-06 57.8 243 24.7
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 4.2e-06 57.0 243 24.7


User provided reference genes

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