Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g2887 Utricularia gibba HOM05D001747 ORTHO05D001696 4.1e-59 231.1 111 100.0
unitig_22.g6958 Utricularia gibba HOM05D001747 ORTHO05D001696 1.2e-13 80.1 57 70.2
Migut.G00006 Erythranthe guttata HOM05D001747 ORTHO05D001696 3.8e-12 75.1 49 77.6
Migut.O00398 Erythranthe guttata HOM05D001747 ORTHO05D001696 3.8e-12 75.1 49 77.6
Actinidia02540 Actinidia chinensis HOM05D001747 ORTHO05D001696 5.0e-12 74.7 57 61.4
vmacro08009 Vaccinium macrocarpon HOM05D001747 ORTHO05D001696 6.5e-12 74.3 57 63.2
Rhsim04G0248000 Rhododendron simsii HOM05D001747 ORTHO05D001696 8.5e-12 73.9 57 61.4
CiPaw.01G129800 Carya illinoinensis HOM05D001747 ORTHO05D001696 1.1e-11 73.6 49 73.5
Oeu022703.1 Olea europaea HOM05D001747 ORTHO05D001696 1.1e-11 73.6 49 75.5
Thecc.04G312400 Theobroma cacao HOM05D001747 ORTHO05D001696 1.1e-11 73.6 49 71.4
MSTRG.10182 Avicennia marina HOM05D001747 ORTHO05D001696 1.4e-11 73.2 57 63.2
CSS0027514 Camellia sinensis var. sinensis HOM05D001747 ORTHO05D001696 1.4e-11 73.2 57 61.4
Cfa015725 Carpinus fangiana HOM05D001747 ORTHO05D001696 2.5e-11 72.4 49 71.4
Haze_00773 Corylus avellana HOM05D001747 ORTHO05D001696 2.5e-11 72.4 49 71.4
Duzib151G0196 Durio zibethinus HOM05D001747 ORTHO05D001696 2.5e-11 72.4 49 69.4
Eucgr.H04121 Eucalyptus grandis HOM05D001747 ORTHO05D001696 2.5e-11 72.4 49 71.4
HanXRQChr09g0245831 Helianthus annuus HOM05D001747 ORTHO05D001696 2.5e-11 72.4 49 73.5
MSTRG.21743 Avicennia marina HOM05D001747 ORTHO05D001696 3.2e-11 72.0 57 63.2
Cc03_g00180 Coffea canephora HOM05D001747 ORTHO05D001696 3.2e-11 72.0 57 61.4
SGA_v2.0_scaffold157G37381 Striga asiatica HOM05D001747 ORTHO05D001696 3.2e-11 72.0 49 73.5
Actinidia01061 Actinidia chinensis HOM05D001747 ORTHO05D001696 4.2e-11 71.6 57 59.6
Gohir.A02G058100 Gossypium hirsutum HOM05D001747 ORTHO05D001696 4.2e-11 71.6 49 67.3
Gohir.D02G063900 Gossypium hirsutum HOM05D001747 ORTHO05D001696 4.2e-11 71.6 49 67.3
Gorai.005G071800 Gossypium raimondii HOM05D001747 ORTHO05D001696 4.2e-11 71.6 49 67.3
Lsat_1_v5_gn_6_117920 Lactuca sativa HOM05D001747 ORTHO05D001696 4.2e-11 71.6 49 73.5
QL06p014144 Quercus lobata HOM05D001747 ORTHO05D001696 5.5e-11 71.2 57 59.6
SGA_v2.0_scaffold64G22030 Striga asiatica HOM05D001747 ORTHO05D001696 5.5e-11 71.2 57 61.4
CSS0004385 Camellia sinensis var. sinensis HOM05D001747 ORTHO05D001696 7.2e-11 70.9 57 59.6
Ciclev10005631m.g Citrus clementina HOM05D001747 ORTHO05D001696 7.2e-11 70.9 49 69.4
Peaxi162Scf00668g00311 Petunia axillaris HOM05D001747 ORTHO05D001696 7.2e-11 70.9 49 69.4
CAN.G484.89 Capsicum annuum HOM05D001747 ORTHO05D001696 9.4e-11 70.5 49 69.4
CiPaw.02G069600 Carya illinoinensis HOM05D001747 ORTHO05D001696 9.4e-11 70.5 49 69.4
Manes.03G211500 Manihot esculenta HOM05D001747 ORTHO05D001696 9.4e-11 70.5 57 59.6
Sabra10G0001500 Salix brachista HOM05D001747 ORTHO05D001696 9.4e-11 70.5 46 71.7
SalBow8G3271 Salvia bowleyana HOM05D001747 ORTHO05D001696 9.4e-11 70.5 57 63.2
Dinv29514 Davidia involucrata HOM05D001747 ORTHO05D001696 1.2e-10 70.1 58 58.6
Psat1g017680 Pisum sativum HOM05D001747 ORTHO05D001696 1.2e-10 70.1 58 58.6
Lj6A700T85 Lonicera japonica HOM05D001747 ORTHO05D001696 1.6e-10 69.7 49 67.3
Lalb_Chr11g0073541 Lupinus albus HOM05D001747 ORTHO05D001696 1.6e-10 69.7 45 73.3
Sc13g0007720 Simmondsia chinensis HOM05D001747 ORTHO05D001696 1.6e-10 69.7 49 67.3
Solyc12g098950.2 Solanum lycopersicum HOM05D001747 ORTHO05D001696 1.6e-10 69.7 49 69.4
Sopen12g033700 Solanum pennellii HOM05D001747 ORTHO05D001696 1.6e-10 69.7 49 69.4
TWI53G0604 Tripterygium wilfordii HOM05D001747 ORTHO05D001696 1.6e-10 69.7 57 57.9
arahy.Tifrunner.gnm1.ann1.0G05EQ Arachis hypogaea HOM05D001747 ORTHO05D001696 2.1e-10 69.3 45 68.9
arahy.Tifrunner.gnm1.ann1.SRQ5BD Arachis hypogaea HOM05D001747 ORTHO05D001696 2.1e-10 69.3 49 65.3
DCAR_026949 Daucus carota HOM05D001747 ORTHO05D001696 2.1e-10 69.3 49 69.4
MD16G1137000 Malus domestica HOM05D001747 ORTHO05D001696 2.1e-10 69.3 49 67.3
Nitab4.5_0000895g0240 Nicotiana tabacum HOM05D001747 ORTHO05D001696 2.1e-10 69.3 49 71.4
Nitab4.5_0004665g0070 Nicotiana tabacum HOM05D001747 ORTHO05D001696 2.1e-10 69.3 49 71.4
GSVIVG01017683001 Vitis vinifera HOM05D001747 ORTHO05D001696 2.1e-10 69.3 49 65.3
BcaB04g20842 Brassica carinata HOM05D001747 ORTHO05D001696 2.7e-10 68.9 50 72.0
BcaC09g48701 Brassica carinata HOM05D001747 ORTHO05D001696 2.7e-10 68.9 50 72.0
A01p36910 Brassica napus HOM05D001747 ORTHO05D001696 2.7e-10 68.9 50 72.0
C01p46800 Brassica napus HOM05D001747 ORTHO05D001696 2.7e-10 68.9 50 72.0
BolC1t04653H Brassica oleracea HOM05D001747 ORTHO05D001696 2.7e-10 68.9 50 72.0
BraA01t03750Z Brassica rapa HOM05D001747 ORTHO05D001696 2.7e-10 68.9 50 72.0
Lj4g0012719 Lotus japonicus HOM05D001747 ORTHO05D001696 2.7e-10 68.9 57 56.1
MD13G1140900 Malus domestica HOM05D001747 ORTHO05D001696 2.7e-10 68.9 49 67.3
Phvul.003G121300 Phaseolus vulgaris HOM05D001747 ORTHO05D001696 2.7e-10 68.9 49 67.3
Potri.010G001900 Populus trichocarpa HOM05D001747 ORTHO05D001696 2.7e-10 68.9 49 67.3
Sp3g15610 Schrenkiella parvula HOM05D001747 ORTHO05D001696 2.7e-10 68.9 50 72.0
TAR365G0418 Trochodendron aralioides HOM05D001747 ORTHO05D001696 2.7e-10 68.9 49 65.3
TAR636G3293 Trochodendron aralioides HOM05D001747 ORTHO05D001696 2.7e-10 68.9 57 57.9
VMungo1215G2466 Vigna mungo HOM05D001747 ORTHO05D001696 2.7e-10 68.9 49 67.3
Atru.chr4.3142 Acer truncatum HOM05D001747 ORTHO05D001696 3.6e-10 68.6 49 69.4
Aqoxy2G02524 Aquilegia oxysepala HOM05D001747 ORTHO05D001696 3.6e-10 68.6 45 68.9
EL10Ac3g06261 Beta vulgaris HOM05D001747 ORTHO05D001696 3.6e-10 68.6 49 65.3
Ca_02361_v3 Cicer arietinum L. HOM05D001747 ORTHO05D001696 3.6e-10 68.6 49 67.3
PGR004G0827 Punica granatum HOM05D001747 ORTHO05D001696 3.6e-10 68.6 49 65.3
THA.LOC104802621 Tarenaya hassleriana HOM05D001747 ORTHO05D001696 3.6e-10 68.6 58 60.3
Nn3g21905 Nelumbo nucifera HOM05D001747 ORTHO05D001696 4.6e-10 68.2 49 65.3
Actinidia18505 Actinidia chinensis HOM05D001747 ORTHO05D001696 6.1e-10 67.8 57 57.9
arahy.Tifrunner.gnm1.ann1.Q27SQW Arachis hypogaea HOM05D001747 ORTHO05D001696 6.1e-10 67.8 57 56.1
arahy.Tifrunner.gnm1.ann1.U4ZNRL Arachis hypogaea HOM05D001747 ORTHO05D001696 6.1e-10 67.8 57 56.1
Lalb_Chr08g0233011 Lupinus albus HOM05D001747 ORTHO05D001696 6.1e-10 67.8 49 67.3
Prupe.1G105900 Prunus persica HOM05D001747 ORTHO05D001696 6.1e-10 67.8 49 65.3
Aa31LG8G4390 Aethionema arabicum HOM05D001747 ORTHO05D001696 7.9e-10 67.4 50 70.0
AL3G30520 Arabidopsis lyrata HOM05D001747 ORTHO05D001696 7.9e-10 67.4 50 70.0
AT3G17440 Arabidopsis thaliana HOM05D001747 ORTHO05D001696 7.9e-10 67.4 50 70.0
Carub.0003s1716 Capsella rubella HOM05D001747 ORTHO05D001696 7.9e-10 67.4 50 70.0
CARHR092760 Cardamine hirsuta HOM05D001747 ORTHO05D001696 7.9e-10 67.4 50 70.0
Cpa.g.sc146.28 Carica papaya HOM05D001747 ORTHO05D001696 7.9e-10 67.4 57 56.1
Thhalv10021318m.g Eutrema salsugineum HOM05D001747 ORTHO05D001696 7.9e-10 67.4 50 70.0
FvH4_4g21470 Fragaria vesca HOM05D001747 ORTHO05D001696 7.9e-10 67.4 49 65.3
FAN07G1580 Fragaria x ananassa HOM05D001747 ORTHO05D001696 7.9e-10 67.4 49 65.3
FAN12G0745 Fragaria x ananassa HOM05D001747 ORTHO05D001696 7.9e-10 67.4 49 65.3
FAN17G2420 Fragaria x ananassa HOM05D001747 ORTHO05D001696 7.9e-10 67.4 49 65.3
PSO210G7213 Papaver somniferum HOM05D001747 ORTHO05D001696 7.9e-10 67.4 49 65.3
PSO761G0403 Papaver somniferum HOM05D001747 ORTHO05D001696 7.9e-10 67.4 49 65.3
RcHm_v2.0_Chr4g0427401 Rosa chinensis HOM05D001747 ORTHO05D001696 7.9e-10 67.4 49 65.3
Sed0024737 Sechium edule HOM05D001747 ORTHO05D001696 7.9e-10 67.4 49 67.3
ATR0796G151 Amborella trichopoda HOM05D001747 ORTHO05D001696 1.0e-09 67.0 49 67.3
BcaB06g25845 Brassica carinata HOM05D001747 ORTHO05D001696 1.0e-09 67.0 50 68.0
AUR62002559 Chenopodium quinoa HOM05D001747 ORTHO05D001696 1.0e-09 67.0 49 63.3
Ca_21379_v3 Cicer arietinum L. HOM05D001747 ORTHO05D001696 1.0e-09 67.0 57 52.6
Ca_30147_v3 Cicer arietinum L. HOM05D001747 ORTHO05D001696 1.0e-09 67.0 57 52.6
Duzib212G0821 Durio zibethinus HOM05D001747 ORTHO05D001696 1.0e-09 67.0 49 63.3
Lj3A840T139 Lonicera japonica HOM05D001747 ORTHO05D001696 1.0e-09 67.0 49 65.3
Medtr2g045960 Medicago truncatula HOM05D001747 ORTHO05D001696 1.0e-09 67.0 49 63.3
PGSC0003DMG400004602 Solanum tuberosum HOM05D001747 ORTHO05D001696 1.0e-09 67.0 49 65.3
TPR.G31208 Trifolium pratense HOM05D001747 ORTHO05D001696 1.0e-09 67.0 46 69.6
MBI18_g09640_MAGBIO Magnolia biondii HOM05D001747 ORTHO05D001696 1.4e-09 66.6 53 60.4
BcaC01g03764 Brassica carinata HOM05D001747 ORTHO05D001696 1.8e-09 66.2 50 68.0
C03p48810 Brassica napus HOM05D001747 ORTHO05D001696 1.8e-09 66.2 50 68.0
BolC3t17163H Brassica oleracea HOM05D001747 ORTHO05D001696 1.8e-09 66.2 50 68.0
BraA03t13169Z Brassica rapa HOM05D001747 ORTHO05D001696 1.8e-09 66.2 50 68.0
BraA05t22062Z Brassica rapa HOM05D001747 ORTHO05D001696 1.8e-09 66.2 50 68.0
AL1G54830 Arabidopsis lyrata HOM05D001747 ORTHO05D001696 3.0e-09 65.5 50 66.0
BcaB06g25844 Brassica carinata HOM05D001747 ORTHO05D001696 3.0e-09 65.5 50 66.0
Lj6g0004133 Lotus japonicus HOM05D001747 ORTHO05D001696 3.0e-09 65.5 57 54.4
TPR.G12623 Trifolium pratense HOM05D001747 ORTHO05D001696 3.0e-09 65.5 57 54.4
A05p32340 Brassica napus HOM05D001747 ORTHO05D001696 3.9e-09 65.1 50 66.0
Thhalv10011716m.g Eutrema salsugineum HOM05D001747 ORTHO05D001696 3.9e-09 65.1 50 66.0
Lj6g0011501 Lotus japonicus HOM05D001747 ORTHO05D001696 3.9e-09 65.1 57 54.4
Hund12252 Selenicereus undatus HOM05D001747 ORTHO05D001696 3.9e-09 65.1 50 66.0
CARHR037870 Cardamine hirsuta HOM05D001747 ORTHO05D001696 5.1e-09 64.7 50 64.0
MELO3C021232.2 Cucumis melo HOM05D001747 ORTHO05D001696 5.1e-09 64.7 49 65.3
CsaV3_6G000220 Cucumis sativus L. HOM05D001747 ORTHO05D001696 5.1e-09 64.7 49 65.3
ECA246G1415 Erigeron canadensis HOM05D001747 ORTHO05D001696 5.1e-09 64.7 49 65.3
Lalb_Chr07g0181741 Lupinus albus HOM05D001747 ORTHO05D001696 5.1e-09 64.7 49 63.3
Sp1g35200 Schrenkiella parvula HOM05D001747 ORTHO05D001696 5.1e-09 64.7 50 64.0
AT1G48240 Arabidopsis thaliana HOM05D001747 ORTHO05D001696 6.7e-09 64.3 50 66.0
A03p40190 Brassica napus HOM05D001747 ORTHO05D001696 6.7e-09 64.3 50 66.0
Carub.0001s3738 Capsella rubella HOM05D001747 ORTHO05D001696 6.7e-09 64.3 50 62.0
Dinv18025 Davidia involucrata HOM05D001747 ORTHO05D001696 6.7e-09 64.3 57 59.6
ClCG06G004220 Citrullus lanatus HOM05D001747 ORTHO05D001696 8.8e-09 63.9 45 68.9
DCAR_023401 Daucus carota HOM05D001747 ORTHO05D001696 8.8e-09 63.9 49 65.3
Lalb_Chr23g0276051 Lupinus albus HOM05D001747 ORTHO05D001696 8.8e-09 63.9 45 66.7
HPP92_016966 Vanilla planifolia HOM05D001747 ORTHO05D001696 8.8e-09 63.9 49 61.2
HPP92_017031 Vanilla planifolia HOM05D001747 ORTHO05D001696 8.8e-09 63.9 49 61.2
C05p48990 Brassica napus HOM05D001747 ORTHO05D001696 1.1e-08 63.5 50 64.0
BolC5t33639H Brassica oleracea HOM05D001747 ORTHO05D001696 1.1e-08 63.5 50 64.0
Medtr4g123910 Medicago truncatula HOM05D001747 ORTHO05D001696 1.1e-08 63.5 57 52.6
Os03g0369800 Oryza sativa ssp. japonica HOM05D001747 ORTHO05D001696 1.1e-08 63.5 51 62.7
Zm00001eb017970 Zea mays HOM05D001747 ORTHO05D001696 1.1e-08 63.5 55 60.0
Glyma.13G119900 Glycine max HOM05D001747 ORTHO05D001696 1.9e-08 62.8 49 61.2
CANSAT78G1207 Cannabis sativa HOM05D001747 ORTHO05D001696 2.5e-08 62.4 58 51.7
Psat0s2012g0160 Pisum sativum HOM05D001747 ORTHO05D001696 2.5e-08 62.4 57 54.4
CDE08G1327 Ceratophyllum demersum HOM05D001747 ORTHO05D001696 3.3e-08 62.0 49 61.2
Glyma.17G040400 Glycine max HOM05D001747 ORTHO05D001696 5.7e-08 61.2 49 61.2
SEGI_05986 Sequoiadendron giganteum HOM05D001747 ORTHO05D001696 7.4e-08 60.8 54 55.6
CDE02G0541 Ceratophyllum demersum HOM05D001747 ORTHO05D001696 9.7e-08 60.5 49 59.2
PSO170G5953 Papaver somniferum HOM05D001747 ORTHO05D001696 9.7e-08 60.5 52 63.5
HPP92_010871 Vanilla planifolia HOM05D001747 ORTHO05D001696 1.7e-07 59.7 49 57.1
BcaC05g28790 Brassica carinata HOM05D001747 ORTHO05D001696 2.8e-07 58.9 49 59.2
SEGI_09986 Sequoiadendron giganteum HOM05D001747 ORTHO05D001696 3.7e-07 58.5 45 62.2
PSO357G0505 Papaver somniferum HOM05D001747 ORTHO05D001696 4.8e-07 58.2 52 61.5
ATR0681G176 Amborella trichopoda HOM05D001747 ORTHO05D001696 6.3e-07 57.8 49 57.1
Os07g0637400 Oryza sativa ssp. japonica HOM05D001747 ORTHO05D001696 5.3e-06 54.7 83 41.0


User provided reference genes

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