Gene: AT3G17440

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G17440
  • Transcript Identifier AT3G17440.1
  • Gene Type Coding gene
  • Location Chr3 : 5969909-5972290 : negative

Gene Family Information

  • ID HOM05D001747
  • #Genes/#Species 371/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G17440.1
  • symbol NPSN13
  • Alias ATNPSN13
  • full_name novel plant snare 13
  • uniprot Q9LRP1

Descriptions

  • Description Putative plant snare 13
  • Computational description novel plant snare 13 (NPSN13); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: novel plant snare 12 (TAIR:AT1G48240.1); Has 481 Blast hits to 465 proteins in 133 species: Archae - 4; Bacteria - 38; Metazoa - 112; Fungi - 19; Plants - 145; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006906
IBA
Gene Ontologyvesicle fusion1
GO:0006890
ISO
PLAZA Homology (enrichment)retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum HOM05D001747
GO:0015031
IEA
GOA Databaseprotein transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005484
IBA
IEA
Gene OntologySNAP receptor activity1
GO:0005484
IEA
InterProSNAP receptor activity
GO:0000149
IBA
Gene OntologySNARE binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031201
IBA
IEA
Gene OntologySNARE complex1
GO:0031201
IEA
InterProSNARE complex
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
HDA
Gene Ontologyplasma membrane2
GO:0016020
IEA
GOA Databasemembrane
GO:0005794
IBA
Gene OntologyGolgi apparatus1
GO:0005789
IBA
Gene Ontologyendoplasmic reticulum membrane1
GO:0031902
IBA
Gene Ontologylate endosome membrane1
GO:0012507
IBA
Gene OntologyER to Golgi transport vesicle membrane1
GO:0005829
HDA
Gene Ontologycytosol3
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005737
ISM
Gene Ontologycytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044766 NPSN/SNAP25-like, N-terminal SNARE domain
IPR000727 Target SNARE coiled-coil homology domain
Mapman id Description
22.3.5.1.2.4 Vesicle trafficking.post-Golgi trafficking.target membrane fusion.membrane fusion complexes.Qb-type SNARE components.NPSN-group component