Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 2.6e-127 458.8 239 100.0
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 2.0e-79 299.7 243 68.3
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.4e-75 287.0 223 68.2
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 1.8e-75 286.6 228 64.9
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 8.9e-75 284.3 251 61.0
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.5e-74 283.5 262 59.5
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 2.6e-74 282.7 248 64.9
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 5.8e-74 281.6 254 62.2
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 5.8e-74 281.6 244 63.1
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 7.5e-74 281.2 208 70.2
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 9.8e-74 280.8 254 61.4
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 1.7e-73 280.0 249 60.6
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 1.7e-73 280.0 204 71.6
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 1.7e-73 280.0 258 61.6
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 6.4e-73 278.1 228 64.5
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 3.2e-72 275.8 256 58.6
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 4.1e-72 275.4 252 61.5
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 4.1e-72 275.4 261 57.1
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 5.4e-72 275.0 282 56.0
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 5.4e-72 275.0 254 59.4
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 5.4e-72 275.0 256 59.8
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 1.2e-71 273.9 249 61.0
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.2e-71 273.9 257 59.5
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 2.0e-71 273.1 243 60.5
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 2.7e-71 272.7 249 59.0
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 7.8e-71 271.2 258 57.4
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 1.0e-70 270.8 249 57.8
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 1.3e-70 270.4 261 59.8
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 2.3e-70 269.6 217 63.6
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 2.3e-70 269.6 223 63.7
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 3.0e-70 269.2 221 63.8
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 8.6e-70 267.7 221 63.3
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 1.1e-69 267.3 226 60.2
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 1.5e-69 266.9 204 67.6
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 4.3e-69 265.4 210 65.7
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 7.3e-69 264.6 248 56.0
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 9.5e-69 264.2 221 63.3
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 1.2e-68 263.8 219 60.3
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 1.2e-68 263.8 245 58.4
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.2e-68 263.8 246 58.1
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 2.8e-68 262.7 200 69.0
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 6.2e-68 261.5 215 61.4
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 1.4e-67 260.4 241 57.7
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 1.4e-67 260.4 210 62.4
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 1.8e-67 260.0 214 61.2
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 2.3e-67 259.6 164 76.8
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 4.0e-67 258.8 227 59.9
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 4.0e-67 258.8 240 58.8
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 5.2e-67 258.5 227 59.5
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 8.9e-67 257.7 257 56.8
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 8.9e-67 257.7 247 57.1
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 1.5e-66 256.9 241 56.8
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 2.0e-66 256.5 193 67.9
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 2.0e-66 256.5 228 60.1
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 2.0e-66 256.5 247 56.7
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 2.6e-66 256.1 221 59.3
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 3.4e-66 255.8 242 56.6
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 3.4e-66 255.8 212 61.3
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 3.4e-66 255.8 212 61.3
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 4.4e-66 255.4 221 62.9
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 5.8e-66 255.0 258 52.7
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 5.8e-66 255.0 238 58.0
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 7.5e-66 254.6 203 64.5
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 7.5e-66 254.6 247 56.7
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 9.8e-66 254.2 205 63.4
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 9.8e-66 254.2 241 56.4
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 1.3e-65 253.8 197 67.5
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 1.3e-65 253.8 207 61.8
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 1.7e-65 253.4 262 54.2
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 1.7e-65 253.4 245 55.9
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 2.2e-65 253.1 211 60.7
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.2e-65 253.1 259 54.8
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 3.7e-65 252.3 245 55.5
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 4.9e-65 251.9 236 56.4
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 6.4e-65 251.5 240 57.5
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 8.3e-65 251.1 246 56.5
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 8.3e-65 251.1 238 56.3
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 1.1e-64 250.8 220 60.9
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 1.9e-64 250.0 230 57.8
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 7.0e-64 248.1 256 53.5
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 9.2e-64 247.7 236 58.5
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 1.2e-63 247.3 257 56.0
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 1.6e-63 246.9 254 54.3
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 6.0e-63 245.0 256 55.9
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 6.0e-63 245.0 251 54.6
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 3.0e-62 242.7 255 56.1
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 3.9e-62 242.3 235 54.9
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.1e-61 240.7 256 55.5
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 1.9e-61 240.0 205 60.0
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 2.5e-61 239.6 225 57.8
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 4.3e-61 238.8 223 54.7
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 7.3e-61 238.0 201 60.2
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 4.7e-60 235.3 248 54.0
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 1.8e-59 233.4 213 56.3
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 4.0e-59 232.3 197 60.9
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 6.8e-59 231.5 196 60.2
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 8.3e-57 224.6 157 69.4
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 1.9e-56 223.4 195 58.5
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 3.2e-56 222.6 174 65.5
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 9.2e-56 221.1 254 49.6
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 1.6e-55 220.3 243 51.9
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 2.1e-55 219.9 248 51.2
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 7.8e-55 218.0 196 59.2
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 1.9e-53 213.4 235 48.1
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 2.5e-53 213.0 214 52.3
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 3.3e-53 212.6 207 53.1
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 3.3e-53 212.6 207 53.6
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 2.1e-52 209.9 203 54.7
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 8.1e-52 208.0 205 52.7
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.1e-51 207.6 205 52.7
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.0e-51 205.7 205 52.2
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 8.9e-51 204.5 229 49.3
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 2.6e-50 203.0 174 59.2
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 2.6e-50 203.0 245 48.2
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 2.2e-49 199.9 182 62.1
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 4.9e-49 198.7 173 61.3
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 3.2e-48 196.1 264 46.6
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 9.6e-45 184.5 153 64.1
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 6.9e-43 178.3 165 58.8
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 1.5e-42 177.2 169 52.1
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 1.6e-39 167.2 115 69.6
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 8.7e-38 161.4 162 51.9
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 1.1e-35 154.5 130 66.2
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 1.3e-33 147.5 219 41.1
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 6.4e-33 145.2 133 55.6
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 2.3e-30 136.7 126 54.8
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 3.7e-28 129.4 134 49.3
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 1.1e-27 127.9 160 44.4
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 1.4e-27 127.5 133 51.1
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 1.6e-23 114.0 184 40.8
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 3.3e-21 106.3 126 51.6
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 7.9e-15 85.1 145 40.7
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 2.5e-13 80.1 89 51.7
C04p35970 Brassica napus HOM05D005088 ORTHO05D017652 2.0e-10 70.5 164 35.4
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 2.0e-10 70.5 161 35.4
BcaC02g09844 Brassica carinata HOM05D005088 ORTHO05D017652 2.6e-10 70.1 153 35.3
SMO235G0038 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 1.0e-06 58.2 84 42.9
Sc09g0007140 Simmondsia chinensis HOM05D005088 ORTHO05D389638 1.4e-06 57.8 83 44.6


User provided reference genes

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