Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 1.3e-121 439.9 243 100.0
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 4.9e-121 438.0 242 100.0
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.3e-93 345.1 243 74.1
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.1e-91 340.5 243 77.0
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.1e-91 340.5 243 74.5
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 4.0e-91 338.6 244 79.5
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 2.0e-90 336.3 245 73.1
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 3.4e-90 335.5 243 76.1
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 9.9e-90 334.0 243 75.7
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 9.9e-90 334.0 243 74.9
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 2.2e-89 332.8 243 75.7
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 8.4e-89 330.9 242 74.4
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.1e-88 330.5 243 76.1
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 2.4e-88 329.3 242 76.4
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 3.2e-88 328.9 243 74.1
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 4.2e-88 328.6 242 71.9
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 7.1e-88 327.8 243 74.5
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 2.1e-87 326.2 243 74.5
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.7e-87 325.9 243 74.5
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 3.5e-87 325.5 206 80.1
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 3.5e-87 325.5 238 72.3
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 6.0e-87 324.7 243 72.4
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 6.0e-87 324.7 204 81.4
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.0e-86 323.9 205 80.0
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.3e-86 323.6 243 69.1
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.3e-86 323.6 242 77.7
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.3e-86 323.6 206 79.6
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.3e-86 323.6 243 74.9
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.8e-86 323.2 239 72.4
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 2.3e-86 322.8 243 70.4
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 5.1e-86 321.6 209 79.9
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 6.7e-86 321.2 243 70.0
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 8.7e-86 320.9 243 72.4
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.1e-85 320.5 243 74.1
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.1e-85 320.5 228 79.8
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.9e-85 319.7 243 73.7
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 3.3e-85 318.9 206 79.6
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 5.6e-85 318.2 243 73.7
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 5.6e-85 318.2 241 69.3
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 5.6e-85 318.2 242 74.4
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 1.3e-84 317.0 241 69.3
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 1.3e-84 317.0 243 72.8
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 2.1e-84 316.2 199 81.9
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 2.1e-84 316.2 242 70.2
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.8e-84 315.8 243 72.8
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 2.8e-84 315.8 246 66.7
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 2.8e-84 315.8 242 71.9
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 3.7e-84 315.5 243 73.7
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 6.2e-84 314.7 227 78.4
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 8.1e-84 314.3 207 77.8
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 1.1e-83 313.9 252 68.3
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.4e-83 313.5 243 72.8
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 1.8e-83 313.2 243 73.7
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 3.1e-83 312.4 209 76.1
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 3.1e-83 312.4 242 73.1
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 4.0e-83 312.0 243 70.8
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 5.3e-83 311.6 244 66.8
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 6.9e-83 311.2 241 72.2
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 9.0e-83 310.8 242 70.7
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 9.0e-83 310.8 243 72.8
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 9.0e-83 310.8 243 70.0
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 9.0e-83 310.8 205 77.1
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.2e-82 310.5 226 75.7
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.5e-82 310.1 243 67.1
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 1.5e-82 310.1 242 70.2
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 2.0e-82 309.7 205 77.6
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 4.5e-82 308.5 243 66.7
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.8e-82 308.1 244 67.6
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 7.6e-82 307.8 244 67.2
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 9.9e-82 307.4 242 70.7
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 9.9e-82 307.4 242 70.7
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 9.9e-82 307.4 242 71.1
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 9.9e-82 307.4 242 70.2
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 9.9e-82 307.4 243 66.7
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.3e-81 307.0 244 67.2
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.7e-81 306.6 244 66.8
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 2.2e-81 306.2 242 69.8
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 3.8e-81 305.4 206 76.7
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 6.4e-81 304.7 206 75.7
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.1e-80 303.9 207 75.4
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 1.4e-80 303.5 199 78.9
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.5e-80 302.8 239 69.9
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 3.2e-80 302.4 205 77.1
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.2e-80 302.4 244 66.4
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 3.2e-80 302.4 205 77.1
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 5.5e-80 301.6 208 76.0
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 9.3e-80 300.8 206 75.2
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.6e-79 300.1 246 66.7
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.7e-79 299.3 244 68.9
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 4.6e-79 298.5 227 71.4
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 6.0e-79 298.1 243 68.7
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 6.0e-79 298.1 243 67.9
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.0e-78 297.4 242 66.5
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.3e-78 297.0 201 77.6
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.3e-78 297.0 209 74.6
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.8e-78 296.6 244 68.0
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 6.7e-78 294.7 245 65.3
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 1.5e-77 293.5 242 65.7
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 3.3e-77 292.4 243 67.1
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 4.3e-77 292.0 242 66.5
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 1.3e-76 290.4 243 68.3
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.1e-76 289.7 194 77.3
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 2.8e-76 289.3 241 71.8
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 8.2e-76 287.7 244 66.8
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 8.2e-76 287.7 245 63.7
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 1.1e-75 287.3 243 65.0
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.1e-75 287.3 245 64.1
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 1.8e-75 286.6 245 64.5
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.8e-75 286.6 244 66.0
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 1.8e-75 286.6 205 71.7
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 2.4e-75 286.2 243 65.8
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 2.0e-74 283.1 245 63.3
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 4.5e-74 282.0 245 63.3
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 2.2e-73 279.6 215 68.8
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 2.2e-73 279.6 215 68.8
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 2.9e-73 279.3 205 72.2
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 6.5e-73 278.1 215 68.4
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 6.5e-73 278.1 215 68.4
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 8.4e-73 277.7 246 65.4
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 4.2e-72 275.4 237 61.2
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 7.9e-71 271.2 227 63.4
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 8.7e-70 267.7 227 62.1
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 2.8e-68 262.7 183 74.3
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.1e-67 259.2 177 73.4
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 3.8e-65 252.3 228 60.1
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 4.5e-58 228.8 190 65.8
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 8.5e-57 224.6 244 54.1
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 4.2e-56 222.2 213 59.2
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 2.7e-55 219.5 157 73.2
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.5e-50 203.8 171 65.5
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 2.2e-41 173.3 133 66.2
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 9.4e-40 167.9 213 48.8
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 1.4e-38 164.1 176 51.1
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 2.6e-37 159.8 173 51.4
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 3.4e-37 159.5 111 66.7
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 8.8e-30 134.8 105 60.0
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 8.8e-30 134.8 130 59.2
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 1.2e-29 134.4 188 42.0
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.4e-22 110.9 91 75.8
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 6.8e-22 108.6 86 60.5
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 2.7e-18 96.7 91 57.1
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 3.9e-17 92.8 190 30.5
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 3.1e-14 83.2 61 65.6
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 3.4e-13 79.7 192 30.2
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.6e-07 59.7 63 52.4
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 4.7e-07 59.3 80 46.2


User provided reference genes

Program Settings