Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 3.7e-121 438.3 242 100.0
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 3.7e-121 438.3 242 100.0
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.2e-92 343.6 242 74.0
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 2.4e-91 339.3 240 75.0
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.1e-91 339.0 242 76.9
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 4.0e-91 338.6 244 79.5
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.5e-90 336.7 245 73.1
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 9.9e-90 334.0 241 76.3
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 2.9e-89 332.4 242 75.6
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.9e-89 332.4 242 74.8
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 6.4e-89 331.3 242 75.6
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 2.4e-88 329.3 242 76.4
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.4e-88 329.3 241 74.3
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 3.2e-88 328.9 242 76.0
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 4.2e-88 328.6 242 71.9
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 9.3e-88 327.4 242 74.0
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.6e-87 326.6 241 74.7
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 3.5e-87 325.5 238 72.3
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 6.0e-87 324.7 242 74.4
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 6.0e-87 324.7 204 81.4
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 7.8e-87 324.3 242 74.4
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.0e-86 323.9 205 80.0
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.3e-86 323.6 242 77.7
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.7e-86 323.2 239 72.4
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 2.3e-86 322.8 242 72.3
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 3.0e-86 322.4 204 79.9
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 3.9e-86 322.0 205 79.5
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 5.1e-86 321.6 242 69.0
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 5.1e-86 321.6 242 74.8
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 6.6e-86 321.2 241 70.5
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.1e-85 320.5 228 79.8
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.5e-85 320.1 207 80.2
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.9e-85 319.7 241 70.1
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.5e-85 319.3 241 72.6
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 2.5e-85 319.3 206 79.6
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 4.3e-85 318.5 240 74.6
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 4.3e-85 318.5 241 73.9
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 5.6e-85 318.2 241 69.3
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 1.3e-84 317.0 241 69.3
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.3e-84 317.0 239 74.9
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.6e-84 316.6 242 73.6
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 2.1e-84 316.2 199 81.9
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 2.1e-84 316.2 242 70.2
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 2.8e-84 315.8 240 73.3
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 4.8e-84 315.1 239 72.4
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 6.2e-84 314.7 227 78.4
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 6.2e-84 314.7 240 73.3
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 8.1e-84 314.3 207 77.8
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 8.1e-84 314.3 245 66.5
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.1e-83 313.9 242 73.6
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 3.1e-83 312.4 240 73.3
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 3.1e-83 312.4 242 73.1
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 4.0e-83 312.0 240 74.2
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 5.3e-83 311.6 235 71.9
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 5.3e-83 311.6 241 72.2
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 6.9e-83 311.2 206 76.7
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 9.0e-83 310.8 240 71.2
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 1.2e-82 310.5 241 67.2
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.2e-82 310.5 226 75.7
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.5e-82 310.1 202 77.7
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 2.0e-82 309.7 237 71.7
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 2.0e-82 309.7 240 73.3
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.6e-82 309.3 242 69.8
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 3.4e-82 308.9 239 70.7
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 4.4e-82 308.5 242 66.9
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 5.8e-82 308.1 204 77.5
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 9.9e-82 307.4 242 70.7
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 9.9e-82 307.4 242 70.7
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.3e-81 307.0 241 68.0
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.3e-81 307.0 240 67.1
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.3e-81 307.0 239 71.5
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 1.7e-81 306.6 241 67.6
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 2.2e-81 306.2 242 69.8
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 2.2e-81 306.2 239 70.7
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 2.2e-81 306.2 240 67.1
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.9e-81 305.8 241 67.6
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.8e-81 305.4 241 67.2
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 6.4e-81 304.7 203 77.3
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.9e-80 303.1 204 76.0
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 1.9e-80 303.1 205 75.6
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.4e-80 302.8 239 69.9
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 5.4e-80 301.6 208 76.0
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 5.4e-80 301.6 202 77.7
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 5.4e-80 301.6 198 78.8
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 7.1e-80 301.2 241 66.8
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 7.1e-80 301.2 203 77.3
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.1e-79 299.7 204 75.5
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 4.6e-79 298.5 244 66.8
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 4.6e-79 298.5 227 71.4
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 7.9e-79 297.7 242 69.0
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 7.9e-79 297.7 242 66.5
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.0e-78 297.4 201 77.6
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.7e-78 296.6 242 68.6
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 1.7e-78 296.6 242 67.8
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 2.3e-78 296.2 206 75.2
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 5.1e-78 295.0 242 68.2
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 1.5e-77 293.5 242 65.7
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.3e-77 292.4 242 66.5
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 3.3e-77 292.4 229 68.6
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 9.6e-77 290.8 242 66.9
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 2.1e-76 289.7 241 71.8
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.1e-76 289.7 194 77.3
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 3.6e-76 288.9 242 68.2
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 2.4e-75 286.2 242 66.9
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 3.1e-75 285.8 242 64.9
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 4.0e-75 285.4 229 66.8
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 4.0e-75 285.4 203 71.9
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 5.3e-75 285.0 229 67.2
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 5.3e-75 285.0 243 65.8
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 6.9e-75 284.6 242 65.7
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 9.0e-75 284.3 229 67.7
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 9.9e-74 280.8 227 67.0
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.7e-73 280.0 226 67.3
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 2.9e-73 279.3 205 72.2
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 6.4e-73 278.1 213 69.0
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 6.4e-73 278.1 213 69.0
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 1.9e-72 276.6 213 68.5
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 1.9e-72 276.6 213 68.5
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 3.2e-72 275.8 245 65.3
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 4.2e-72 275.4 237 61.2
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 7.9e-71 271.2 227 63.4
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 8.7e-70 267.7 227 62.1
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 8.1e-68 261.2 182 74.2
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.1e-67 259.2 177 73.4
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 3.8e-65 252.3 228 60.1
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 4.5e-58 228.8 190 65.8
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 3.2e-56 222.6 243 53.9
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.2e-55 220.7 212 59.0
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 6.1e-55 218.4 155 73.5
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.5e-50 203.8 171 65.5
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 8.5e-41 171.4 132 65.9
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 2.7e-39 166.4 212 48.6
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 1.4e-38 164.1 176 51.1
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 2.6e-37 159.8 173 51.4
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 9.7e-37 157.9 110 66.4
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 8.8e-30 134.8 130 59.2
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 1.1e-29 134.4 188 42.0
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 2.0e-29 133.7 102 60.8
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.4e-22 110.9 91 75.8
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 6.8e-22 108.6 86 60.5
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 2.7e-18 96.7 91 57.1
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 3.8e-17 92.8 190 30.5
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 8.8e-14 81.6 60 65.0
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 3.4e-13 79.7 192 30.2
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.6e-07 59.7 63 52.4
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 4.7e-07 59.3 80 46.2


User provided reference genes

Program Settings