Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 1.0e-140 503.4 261 100.0
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 1.6e-106 389.8 263 79.5
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 6.9e-105 384.4 268 78.0
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 6.9e-105 384.4 262 78.6
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 2.6e-104 382.5 270 77.4
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 1.7e-103 379.8 271 74.5
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 3.8e-103 378.6 266 77.8
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 6.4e-103 377.9 274 78.8
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 1.1e-102 377.1 273 78.0
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.4e-102 375.9 274 77.0
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 7.1e-102 374.4 275 74.9
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 9.3e-102 374.0 275 74.9
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.2e-101 373.6 264 76.5
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 1.2e-101 373.6 265 77.7
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 1.6e-101 373.2 267 78.7
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 2.1e-101 372.9 275 74.5
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 2.7e-101 372.5 278 74.5
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 6.0e-101 371.3 247 79.4
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 6.0e-101 371.3 268 76.5
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 7.9e-101 370.9 263 77.2
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 1.3e-100 370.2 263 74.9
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 1.3e-100 370.2 263 74.9
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 1.3e-100 370.2 242 81.0
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 2.3e-100 369.4 263 74.9
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 2.3e-100 369.4 263 74.9
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 2.3e-100 369.4 263 74.9
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 5.1e-100 368.2 263 74.5
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 5.1e-100 368.2 263 74.5
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 5.1e-100 368.2 263 74.5
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 5.1e-100 368.2 263 74.5
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 5.1e-100 368.2 263 74.5
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 5.1e-100 368.2 263 74.5
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 5.1e-100 368.2 271 74.2
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 6.7e-100 367.9 244 79.1
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 6.7e-100 367.9 263 74.5
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 6.7e-100 367.9 263 74.5
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 6.7e-100 367.9 267 74.2
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 6.7e-100 367.9 271 73.8
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 6.7e-100 367.9 271 74.5
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.5e-99 366.7 273 74.0
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 1.9e-99 366.3 263 74.1
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.9e-99 366.3 267 74.2
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 1.9e-99 366.3 271 73.1
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 2.5e-99 365.9 271 73.4
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 2.5e-99 365.9 270 73.7
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 7.4e-99 364.4 275 71.3
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 9.6e-99 364.0 270 74.8
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 9.6e-99 364.0 265 73.6
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 1.6e-98 363.2 263 73.8
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 1.6e-98 363.2 273 73.3
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 2.1e-98 362.8 277 71.8
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 2.1e-98 362.8 273 74.7
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 2.8e-98 362.5 275 73.1
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 2.8e-98 362.5 272 73.2
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 3.7e-98 362.1 272 72.1
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 6.2e-98 361.3 271 74.9
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 8.1e-98 360.9 275 71.6
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.1e-97 360.5 215 86.0
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 1.4e-97 360.1 245 78.0
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.8e-97 359.8 266 74.1
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 2.4e-97 359.4 263 73.8
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 3.1e-97 359.0 271 72.3
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 3.1e-97 359.0 263 73.0
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 4.0e-97 358.6 273 72.5
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 5.3e-97 358.2 277 71.8
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 6.9e-97 357.8 242 76.9
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.9e-97 357.8 276 69.9
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 9.0e-97 357.5 275 69.8
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.2e-96 357.1 280 70.0
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.2e-96 357.1 275 70.9
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.5e-96 356.7 276 69.6
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.0e-96 356.3 248 75.4
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 2.0e-96 356.3 276 70.3
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 2.0e-96 356.3 269 69.1
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.6e-96 355.9 271 71.6
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.4e-96 355.5 269 71.4
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.4e-96 355.5 271 72.0
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 3.4e-96 355.5 277 70.8
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.5e-96 355.1 276 69.2
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 5.8e-96 354.8 279 69.5
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 7.6e-96 354.4 214 83.6
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 1.0e-95 354.0 274 70.8
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 1.0e-95 354.0 277 70.4
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.0e-95 354.0 276 70.3
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.0e-95 354.0 276 70.3
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.0e-95 354.0 276 70.3
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 1.7e-95 353.2 244 75.8
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 1.7e-95 353.2 244 75.8
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.7e-95 353.2 247 75.7
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 2.2e-95 352.8 270 71.1
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 2.2e-95 352.8 269 71.4
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 2.9e-95 352.4 272 71.0
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 6.5e-95 351.3 267 69.7
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 6.5e-95 351.3 267 69.7
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 1.1e-94 350.5 272 70.2
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 4.2e-94 348.6 271 71.2
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 4.2e-94 348.6 214 82.7
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 9.3e-94 347.4 267 72.7
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 9.3e-94 347.4 270 70.4
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 1.6e-93 346.7 274 70.4
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 2.1e-93 346.3 227 78.0
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 2.1e-93 346.3 275 69.5
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 2.7e-93 345.9 271 69.7
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 4.6e-93 345.1 270 71.1
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 7.9e-93 344.4 278 69.4
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 3.0e-92 342.4 277 69.3
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 8.7e-92 340.9 278 70.1
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 8.7e-92 340.9 271 69.7
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 1.1e-91 340.5 279 69.2
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.9e-91 339.7 197 87.3
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 4.3e-91 338.6 278 69.4
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 9.6e-91 337.4 270 70.0
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 1.6e-90 336.7 282 66.7
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 2.1e-90 336.3 273 68.5
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 2.4e-89 332.8 271 67.9
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 2.4e-89 332.8 192 86.5
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 1.3e-87 327.0 274 67.5
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 1.1e-83 313.9 221 74.2
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 3.3e-83 312.4 196 80.1
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 1.1e-81 307.4 223 72.2
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 1.2e-80 303.9 212 73.1
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 8.8e-76 287.7 236 70.8
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.2e-71 273.1 168 81.5
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 2.2e-63 246.5 160 75.0
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 2.6e-59 233.0 134 89.6
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 2.6e-59 233.0 161 75.2
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 7.0e-57 224.9 189 70.9
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 3.5e-56 222.6 164 68.3
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 2.7e-53 213.0 192 64.1
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 4.1e-49 199.1 196 60.2
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 8.0e-45 184.9 160 63.1
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 9.2e-41 171.4 146 69.2
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 7.7e-40 168.3 124 71.8
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.4e-36 157.5 232 46.1
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.8e-36 157.1 232 46.1
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 9.8e-35 151.4 96 79.2
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 3.7e-34 149.4 230 47.4
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 9.8e-19 98.2 80 71.2
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 9.5e-14 81.6 110 50.0
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 2.2e-10 70.5 167 32.9
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 2.9e-10 70.1 179 31.3
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.2e-08 64.7 38 78.9
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.5e-08 63.2 38 81.6
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 3.9e-07 59.7 112 37.5
AagrBONN_evm.TU.Sc2ySwM_117.2075 Anthoceros agrestis HOM05D041339 ORTHO05D031170 2.5e-06 57.0 86 39.5


User provided reference genes

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