Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 0.0e+00 2085.8 1076 100.0
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1150.6 1016 60.5
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1139.0 1008 60.3
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1133.2 1008 60.7
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1130.2 997 61.2
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1094.0 1012 58.2
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 6.0e-296 1021.1 1017 54.9
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 1.3e-295 1020.0 1017 54.6
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 1.7e-290 1003.0 1008 54.8
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 2.1e-288 996.1 1014 54.3
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 9.6e-286 987.3 1009 53.4
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 8.1e-285 984.2 1016 53.5
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 8.9e-284 980.7 1016 53.2
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 2.6e-283 979.2 1032 53.7
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 2.6e-283 979.2 1016 53.5
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 5.8e-283 978.0 1029 53.5
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 5.8e-283 978.0 1026 53.1
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 1.7e-282 976.5 1025 52.3
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 2.1e-280 969.5 1020 53.2
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 6.0e-280 968.0 1029 53.8
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 1.7e-279 966.5 1027 52.6
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 3.0e-279 965.7 1024 53.1
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 1.5e-278 963.4 1020 53.3
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 3.3e-278 962.2 1030 52.3
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 3.3e-278 962.2 1029 52.2
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 5.6e-278 961.4 1019 53.2
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 5.6e-278 961.4 1034 52.7
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 1.3e-277 960.3 1019 53.2
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 2.1e-277 959.5 1029 52.3
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 9.9e-275 950.7 939 55.9
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 2.2e-274 949.5 1025 52.7
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 5.1e-271 938.3 1008 51.6
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 4.3e-270 935.3 1023 51.0
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 2.1e-269 932.9 1018 51.9
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 1.5e-267 926.8 1028 50.9
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 2.0e-267 926.4 1014 52.4
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 4.5e-267 925.2 1027 50.5
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 2.2e-266 922.9 1001 51.6
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 1.4e-265 920.2 1022 51.4
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 1.2e-264 917.1 1011 52.5
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 1.6e-264 916.8 1023 50.2
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 2.1e-264 916.4 1013 50.0
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 3.5e-264 915.6 1014 48.8
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 4.6e-264 915.2 1032 50.4
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 6.0e-264 914.8 1024 49.6
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 5.1e-263 911.8 1023 50.1
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 4.3e-262 908.7 1016 48.9
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 1.4e-260 903.7 1020 49.8
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 1.7e-258 896.7 1019 50.5
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 1.7e-258 896.7 1023 50.3
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 3.8e-258 895.6 1023 48.6
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 1.1e-257 894.0 1006 49.9
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.2e-256 890.6 948 51.8
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 1.0e-255 887.5 1019 49.3
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 1.0e-255 887.5 1023 48.9
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 1.5e-254 883.6 1011 49.7
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 2.5e-254 882.9 1019 48.9
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 4.3e-254 882.1 1026 49.8
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 7.4e-254 881.3 1011 49.6
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 1.3e-253 880.6 1017 49.0
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 2.2e-253 879.8 1022 48.4
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 5.3e-252 875.2 1014 49.3
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 1.7e-250 870.2 983 50.9
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 2.9e-250 869.4 1022 49.0
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 5.5e-249 865.1 1013 49.1
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 7.9e-248 861.3 1020 48.4
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 1.3e-247 860.5 1014 49.8
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 2.3e-247 859.8 1023 50.0
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 2.5e-246 856.3 1021 49.6
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 2.8e-245 852.8 1027 49.9
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 3.7e-245 852.4 979 51.3
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 1.8e-244 850.1 1024 49.7
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 1.2e-243 847.4 979 51.2
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 1.5e-243 847.0 1024 49.1
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 1.5e-243 847.0 1033 48.2
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 2.0e-243 846.7 876 54.0
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 1.3e-242 844.0 1020 49.0
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 8.5e-242 841.3 978 50.1
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 5.5e-241 838.6 978 50.3
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 9.4e-241 837.8 910 52.1
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 3.6e-240 835.9 1014 49.4
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 1.0e-239 834.3 1024 48.8
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 3.9e-239 832.4 842 52.5
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.0e-238 830.1 967 49.0
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 3.1e-236 822.8 1015 47.1
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 2.6e-235 819.7 979 50.3
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 1.7e-234 817.0 1025 48.1
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 1.7e-234 817.0 951 48.7
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 5.5e-233 812.0 1036 45.5
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 4.4e-230 802.4 1017 45.8
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 6.5e-226 788.5 947 47.9
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 2.5e-225 786.6 1053 44.6
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 4.0e-223 779.2 949 49.4
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 1.5e-222 777.3 986 48.5
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 1.5e-222 777.3 986 48.5
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 4.8e-221 772.3 935 45.5
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 2.2e-218 763.5 1004 45.8
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 1.4e-212 744.2 1020 42.4
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 1.2e-206 724.5 943 46.1
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 2.0e-206 723.8 930 46.2
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 4.7e-200 702.6 745 52.2
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 5.8e-198 695.7 1011 42.5
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 1.7e-194 684.1 928 44.3
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 4.7e-192 676.0 756 49.9
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 7.0e-188 662.1 663 52.6
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 3.0e-186 656.8 956 41.8
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 6.8e-183 645.6 607 55.5
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 5.2e-175 619.4 835 44.9
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.6e-168 596.7 819 42.4
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 2.6e-150 537.3 819 40.7
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.4e-150 537.0 517 53.6
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 2.4e-148 530.8 1145 35.3
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.3e-136 491.9 1066 33.2
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.1e-135 487.3 822 39.2
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 2.0e-134 484.6 1154 32.5
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 4.8e-120 436.8 610 45.7
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 3.7e-112 410.6 723 39.3
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 1.6e-91 342.0 1273 26.6
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.7e-78 298.1 314 49.4
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 1.3e-69 269.2 516 38.6
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.1e-63 247.7 168 71.4
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.8e-48 198.0 122 77.9
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 4.0e-34 151.4 156 49.4
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 2.2e-32 145.6 234 38.9
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 4.6e-30 137.9 644 25.5
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 5.1e-29 134.4 131 51.9
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 5.7e-28 131.0 82 76.8
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 2.1e-27 129.0 116 56.9
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 2.8e-27 128.6 107 61.7
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.8e-26 125.9 74 83.8
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 9.0e-26 123.6 74 83.8
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 2.6e-25 122.1 105 58.1
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 3.8e-24 118.2 70 81.4
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 6.1e-22 110.9 87 58.6
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 4.1e-18 98.2 114 46.5
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.1e-14 85.9 57 64.9
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.8e-11 74.7 79 46.8
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.8e-11 74.7 79 46.8
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.2e-09 70.1 70 48.6
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 7.9e-06 57.4 127 27.6
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 7.9e-06 57.4 161 26.7


User provided reference genes

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