Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9713 Utricularia gibba HOM05D003624 ORTHO05D004188 1.9e-37 158.7 80 100.0
unitig_749.g13772 Utricularia gibba HOM05D003624 ORTHO05D004188 8.7e-35 149.8 78 94.9
Nitab4.5_0001992g0010 Nicotiana tabacum HOM05D003624 ORTHO05D004188 4.1e-32 141.0 77 89.6
Nitab4.5_0006489g0020 Nicotiana tabacum HOM05D003624 ORTHO05D004188 4.1e-32 141.0 77 89.6
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 6.9e-32 140.2 77 88.3
Peaxi162Scf00001g00045 Petunia axillaris HOM05D003624 ORTHO05D004188 9.0e-32 139.8 77 88.3
Peaxi162Scf00015g01215 Petunia axillaris HOM05D003624 ORTHO05D004188 9.0e-32 139.8 77 88.3
Peaxi162Scf00015g10126 Petunia axillaris HOM05D003624 ORTHO05D004188 9.0e-32 139.8 77 88.3
Peaxi162Scf00271g00059 Petunia axillaris HOM05D003624 ORTHO05D004188 9.0e-32 139.8 77 88.3
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 3.4e-31 137.9 77 88.3
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 4.5e-31 137.5 77 84.4
Atru.chr4.2829 Acer truncatum HOM05D003624 ORTHO05D004188 1.0e-30 136.3 77 87.0
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 1.3e-30 136.0 77 85.7
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 1.7e-30 135.6 77 87.0
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 1.7e-30 135.6 77 87.0
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 2.2e-30 135.2 77 87.0
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 2.2e-30 135.2 77 87.0
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 2.9e-30 134.8 77 84.4
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 3.8e-30 134.4 77 87.0
PGSC0003DMG400023427 Solanum tuberosum HOM05D003624 ORTHO05D004188 3.8e-30 134.4 77 87.0
HanXRQChr08g0234751 Helianthus annuus HOM05D003624 ORTHO05D004188 6.5e-30 133.7 77 87.0
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 6.5e-30 133.7 77 85.7
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 1.1e-29 132.9 77 83.1
Lsat_1_v5_gn_3_22041 Lactuca sativa HOM05D003624 ORTHO05D004188 1.4e-29 132.5 77 84.4
Cc07_g19190 Coffea canephora HOM05D003624 ORTHO05D004188 1.9e-29 132.1 76 84.2
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 2.5e-29 131.7 77 84.4
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 2.5e-29 131.7 77 84.4
Prupe.4G141300 Prunus persica HOM05D003624 ORTHO05D004188 3.2e-29 131.3 77 85.7
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 4.2e-29 131.0 77 81.8
Sp1g41070 Schrenkiella parvula HOM05D003624 ORTHO05D004188 4.2e-29 131.0 77 83.1
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 7.2e-29 130.2 72 84.7
Eucgr.C04375 Eucalyptus grandis HOM05D003624 ORTHO05D004188 7.2e-29 130.2 72 90.3
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 7.2e-29 130.2 77 84.4
Thecc.10G043100 Theobroma cacao HOM05D003624 ORTHO05D004188 7.2e-29 130.2 77 83.1
CARHR045130 Cardamine hirsuta HOM05D003624 ORTHO05D004188 9.4e-29 129.8 72 86.1
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 9.4e-29 129.8 77 84.4
Nitab4.5_0000578g0060 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.6e-28 129.0 77 80.5
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 2.1e-28 128.6 77 83.1
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 2.1e-28 128.6 77 83.1
BcaB04g16957 Brassica carinata HOM05D003624 ORTHO05D004188 2.7e-28 128.3 72 86.1
ClCG05G013440 Citrullus lanatus HOM05D003624 ORTHO05D004188 3.6e-28 127.9 77 83.1
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 3.6e-28 127.9 77 81.8
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 3.6e-28 127.9 77 81.8
Prupe.1G588200 Prunus persica HOM05D003624 ORTHO05D004188 3.6e-28 127.9 76 84.2
Prupe.2G234600 Prunus persica HOM05D003624 ORTHO05D004188 3.6e-28 127.9 76 84.2
Prupe.6G266400 Prunus persica HOM05D003624 ORTHO05D004188 3.6e-28 127.9 76 84.2
HPP92_019195 Vanilla planifolia HOM05D003624 ORTHO05D004188 3.6e-28 127.9 68 91.2
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 4.6e-28 127.5 77 81.8
FAN10G3681 Fragaria x ananassa HOM05D003624 ORTHO05D004188 4.6e-28 127.5 76 82.9
Os03g0570300 Oryza sativa ssp. japonica HOM05D003624 ORTHO05D004188 4.6e-28 127.5 77 81.8
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 6.1e-28 127.1 71 87.3
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 6.1e-28 127.1 71 87.3
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 6.1e-28 127.1 71 87.3
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 6.1e-28 127.1 71 87.3
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 6.1e-28 127.1 71 87.3
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 1.0e-27 126.3 77 79.2
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 1.4e-27 125.9 77 80.5
TAR636G1411 Trochodendron aralioides HOM05D003624 ORTHO05D004188 2.3e-27 125.2 76 81.6
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 3.9e-27 124.4 71 83.1
CARHR218910 Cardamine hirsuta HOM05D003624 ORTHO05D004188 3.9e-27 124.4 78 79.5
CSS0014624 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 5.1e-27 124.0 72 84.7
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 1.5e-26 122.5 71 83.1
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 2.5e-26 121.7 77 76.6
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 3.3e-26 121.3 71 81.7
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 3.3e-26 121.3 71 81.7
Carub.0001s4395 Capsella rubella HOM05D003624 ORTHO05D004188 5.7e-26 120.6 77 76.6
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 5.7e-26 120.6 77 75.3
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 9.7e-26 119.8 71 80.3
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 9.7e-26 119.8 71 80.3
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 9.7e-26 119.8 77 79.2
AUR62001070 Chenopodium quinoa HOM05D003624 ORTHO05D004188 2.2e-25 118.6 77 76.6
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 2.8e-25 118.2 77 74.0
AL185U10020 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 6.3e-25 117.1 77 75.3
Aqoxy6G02821 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 8.2e-25 116.7 77 75.3
SMO142G0061 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 1.4e-24 115.9 77 76.6
SMO358G0194 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 1.4e-24 115.9 77 76.6
MD01G1133500 Malus domestica HOM05D003624 ORTHO05D004188 1.8e-24 115.5 76 77.6
HPP92_019187 Vanilla planifolia HOM05D003624 ORTHO05D004188 1.8e-24 115.5 77 75.3
CSS0018661 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 2.4e-24 115.2 77 76.6
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 3.1e-24 114.8 77 70.1
DCAR_001936 Daucus carota HOM05D003624 ORTHO05D004188 6.9e-24 113.6 77 72.7
Solyc05g054500.1 Solanum lycopersicum HOM05D003624 ORTHO05D004188 9.1e-24 113.2 77 75.3
Sopen05g032980 Solanum pennellii HOM05D003624 ORTHO05D004188 9.1e-24 113.2 77 75.3
AUR62032608 Chenopodium quinoa HOM05D003624 ORTHO05D004188 1.2e-23 112.8 77 72.7
AL1G63460 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 2.0e-23 112.1 77 72.7
Sabra08G0039900 Salix brachista HOM05D003624 ORTHO05D004188 3.4e-23 111.3 70 77.1
CDE07G1603 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 4.5e-23 110.9 76 72.4
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 7.7e-23 110.2 77 74.0
Zm00001eb232160 Zea mays HOM05D003624 ORTHO05D004188 7.7e-23 110.2 77 72.7
TWI60G1571 Tripterygium wilfordii HOM05D003624 ORTHO05D004188 1.3e-22 109.4 74 74.3
Aqoxy2G03154 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 1.1e-21 106.3 77 71.4
CDE04G0801 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 1.4e-21 105.9 76 68.4
SEGI_06253 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.9e-21 105.5 72 70.8
FvH4_7g22390 Fragaria vesca HOM05D003624 ORTHO05D004188 4.2e-21 104.4 76 69.7
FAN01G2477 Fragaria x ananassa HOM05D003624 ORTHO05D004188 4.2e-21 104.4 76 69.7
FAN06G1965 Fragaria x ananassa HOM05D003624 ORTHO05D004188 4.2e-21 104.4 76 69.7
FAN06G4942 Fragaria x ananassa HOM05D003624 ORTHO05D004188 4.2e-21 104.4 76 69.7
RcHm_v2.0_Chr1g0367021 Rosa chinensis HOM05D003624 ORTHO05D004188 4.2e-21 104.4 76 69.7
Manes.07G115700 Manihot esculenta HOM05D003624 ORTHO05D004188 5.5e-21 104.0 77 68.8
Potri.010G204900 Populus trichocarpa HOM05D003624 ORTHO05D004188 7.2e-21 103.6 77 68.8
Dinv27204 Davidia involucrata HOM05D003624 ORTHO05D004188 9.4e-21 103.2 77 68.8
QL06p008449 Quercus lobata HOM05D003624 ORTHO05D004188 1.2e-20 102.8 77 71.4
QL09p007395 Quercus lobata HOM05D003624 ORTHO05D004188 1.2e-20 102.8 77 71.4
QL93p0214_0025 Quercus lobata HOM05D003624 ORTHO05D004188 1.2e-20 102.8 77 71.4
CAN.G1013.23 Capsicum annuum HOM05D003624 ORTHO05D004188 1.6e-20 102.4 77 62.3
Lj8P417T12 Lonicera japonica HOM05D003624 ORTHO05D004188 1.6e-20 102.4 77 67.5
Ciclev10005088m.g Citrus clementina HOM05D003624 ORTHO05D004188 4.7e-20 100.9 77 67.5
FAN01G1443 Fragaria x ananassa HOM05D003624 ORTHO05D004188 4.7e-20 100.9 71 70.4
FAN03G2437 Fragaria x ananassa HOM05D003624 ORTHO05D004188 4.7e-20 100.9 71 70.4
RcHm_v2.0_Chr2g0124981 Rosa chinensis HOM05D003624 ORTHO05D004188 4.7e-20 100.9 76 68.4
Lj2C36T16 Lonicera japonica HOM05D003624 ORTHO05D004188 6.1e-20 100.5 77 66.2
Lj8P413T16 Lonicera japonica HOM05D003624 ORTHO05D004188 6.1e-20 100.5 77 68.8
MBI12_g10423_MAGBIO Magnolia biondii HOM05D003624 ORTHO05D004188 6.1e-20 100.5 77 67.5
Potri.008G055300 Populus trichocarpa HOM05D003624 ORTHO05D004188 1.0e-19 99.8 77 66.2
AagrBONN_evm.TU.Sc2ySwM_368.2590 Anthoceros agrestis HOM05D003624 ORTHO05D004188 1.4e-19 99.4 77 63.6
Hma1.2p1_0493F.1_g164850 Hydrangea macrophylla HOM05D003624 ORTHO05D004188 3.0e-19 98.2 77 66.2
Rhsim03G0131100 Rhododendron simsii HOM05D003624 ORTHO05D004188 3.0e-19 98.2 77 66.2
Rhsim05G0153700 Rhododendron simsii HOM05D003624 ORTHO05D004188 3.0e-19 98.2 77 66.2
Rhsim05G0154000 Rhododendron simsii HOM05D003624 ORTHO05D004188 3.0e-19 98.2 77 66.2
arahy.Tifrunner.gnm1.ann1.8ZK91E Arachis hypogaea HOM05D003624 ORTHO05D004188 5.1e-19 97.4 53 88.7
CANSAT54G1653 Cannabis sativa HOM05D003624 ORTHO05D004188 6.7e-19 97.1 77 66.2
Psat2g013800 Pisum sativum HOM05D003624 ORTHO05D004188 6.7e-19 97.1 55 83.6
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 6.7e-19 97.1 77 61.0
SEGI_37535 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 8.8e-19 96.7 77 62.3
EL10Ac6g13458 Beta vulgaris HOM05D003624 ORTHO05D004188 1.5e-18 95.9 82 56.1
AT5G51795 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 2.6e-18 95.1 77 64.9
COL.COLO4_15033 Corchorus olitorius HOM05D003624 ORTHO05D004188 2.6e-18 95.1 55 85.5
Oeu048253.2 Olea europaea HOM05D003624 ORTHO05D004188 4.4e-18 94.4 77 63.6
Medtr5g092130 Medicago truncatula HOM05D003624 ORTHO05D004188 5.7e-18 94.0 77 62.3
THA.LOC104815670 Tarenaya hassleriana HOM05D003624 ORTHO05D004188 5.7e-18 94.0 71 67.6
CAN.G862.53 Capsicum annuum HOM05D003624 ORTHO05D004188 7.4e-18 93.6 77 64.9
ATR0691G007 Amborella trichopoda HOM05D003624 ORTHO05D004188 9.7e-18 93.2 77 62.3
COL.COLO4_34579 Corchorus olitorius HOM05D003624 ORTHO05D004188 1.3e-17 92.8 77 62.3
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 8.2e-17 90.1 84 54.8
Nitab4.5_0004476g0070 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.4e-16 89.4 77 61.0
Psat2g013120 Pisum sativum HOM05D003624 ORTHO05D004188 5.3e-16 87.4 77 59.7
ATR0691G167 Amborella trichopoda HOM05D003624 ORTHO05D004188 9.1e-16 86.7 53 75.5
TPR.G29126 Trifolium pratense HOM05D003624 ORTHO05D004188 9.1e-16 86.7 72 62.5
Ca_06298_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 1.6e-15 85.9 77 59.7
Ca_06309_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 1.6e-15 85.9 77 59.7
CiPaw.01G286800 Carya illinoinensis HOM05D003624 ORTHO05D004188 2.0e-15 85.5 77 62.3
DCAR_027848 Daucus carota HOM05D003624 ORTHO05D004188 2.0e-15 85.5 76 59.2
LjContig00310g0027848 Lotus japonicus HOM05D003624 ORTHO05D004188 2.0e-15 85.5 77 58.4
VMungo0647G0302 Vigna mungo HOM05D003624 ORTHO05D004188 2.0e-15 85.5 77 58.4
arahy.Tifrunner.gnm1.ann1.P0I32D Arachis hypogaea HOM05D003624 ORTHO05D004188 4.5e-15 84.3 53 77.4
Lalb_Chr03g0040441 Lupinus albus HOM05D003624 ORTHO05D004188 5.9e-15 84.0 77 57.1
vmacro17110 Vaccinium macrocarpon HOM05D003624 ORTHO05D004188 5.9e-15 84.0 77 58.4
Lalb_Chr04g0248651 Lupinus albus HOM05D003624 ORTHO05D004188 7.7e-15 83.6 77 57.1
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.0e-14 83.2 78 56.4
Haze_15559 Corylus avellana HOM05D003624 ORTHO05D004188 1.3e-14 82.8 77 59.7
Phvul.003G195200 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 1.3e-14 82.8 77 57.1
arahy.Tifrunner.gnm1.ann1.2R0TK7 Arachis hypogaea HOM05D003624 ORTHO05D004188 2.9e-14 81.6 71 59.2
Lj3g0027074 Lotus japonicus HOM05D003624 ORTHO05D004188 3.8e-14 81.3 72 59.7
Phvul.008G264800 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 3.8e-14 81.3 77 55.8
Lj3g0001422 Lotus japonicus HOM05D003624 ORTHO05D004188 1.1e-13 79.7 71 59.2
arahy.Tifrunner.gnm1.ann1.T8I7QW Arachis hypogaea HOM05D003624 ORTHO05D004188 1.5e-13 79.3 44 86.4
Glyma.02G288800 Glycine max HOM05D003624 ORTHO05D004188 3.2e-13 78.2 71 57.7
Glyma.14G026000 Glycine max HOM05D003624 ORTHO05D004188 3.2e-13 78.2 71 57.7
Zm00001eb208070 Zea mays HOM05D003624 ORTHO05D004188 3.0e-11 71.6 77 53.2
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 6.7e-11 70.5 70 50.0
SMO347G0189 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 6.7e-11 70.5 64 60.9
SEGI_08994 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 6.3e-09 63.9 41 73.2
SEGI_35739 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 6.3e-09 63.9 41 73.2
Prupe.4G141400 Prunus persica HOM05D003624 ORTHO05D004188 3.1e-08 61.6 39 79.5
SEGI_33130 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 3.5e-07 58.2 37 75.7
GSVIVG01008269001 Vitis vinifera HOM05D003624 ORTHO05D004188 3.5e-07 58.2 77 46.8


User provided reference genes

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