Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 4.6e-175 617.8 327 100.0
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 1.8e-126 456.4 328 74.1
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 4.5e-122 441.8 327 72.5
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 2.5e-120 436.0 330 72.4
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 7.3e-120 434.5 293 75.1
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.2e-119 433.7 329 72.9
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 1.6e-119 433.3 324 71.3
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.8e-119 432.6 300 75.0
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 2.8e-119 432.6 321 72.9
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 4.7e-119 431.8 324 71.0
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.4e-118 430.3 329 71.4
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 1.4e-118 430.3 324 71.0
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 3.1e-118 429.1 306 72.9
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 5.2e-118 428.3 322 72.7
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 5.8e-117 424.9 329 70.5
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 1.7e-116 423.3 340 70.3
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 2.2e-116 422.9 359 65.7
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 2.4e-115 419.5 322 68.3
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.2e-115 419.1 315 68.9
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.2e-114 417.2 323 69.7
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 1.3e-113 413.7 321 68.8
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.3e-113 413.7 310 73.9
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 1.3e-113 413.7 298 72.5
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 2.3e-113 412.9 408 58.1
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 8.6e-113 411.0 324 69.4
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.1e-112 410.6 320 67.8
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.5e-112 410.2 298 71.1
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 1.9e-112 409.8 397 60.5
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 7.3e-112 407.9 322 67.4
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.6e-111 406.8 324 69.4
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 4.7e-111 405.2 325 67.4
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 4.7e-111 405.2 298 70.5
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 6.2e-111 404.8 291 72.2
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.2e-111 404.8 324 66.7
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 8.0e-111 404.4 320 67.2
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 1.1e-110 404.1 324 68.5
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.1e-110 404.1 323 66.9
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 1.4e-110 403.7 314 67.8
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 1.8e-110 403.3 317 67.2
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 1.8e-110 403.3 318 67.3
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.1e-110 402.5 325 67.1
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 3.1e-110 402.5 327 65.7
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 4.0e-110 402.1 321 67.0
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 5.2e-110 401.7 324 66.7
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.8e-110 401.4 324 65.7
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 2.0e-109 399.8 315 67.3
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 4.4e-109 398.7 295 69.5
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 5.8e-109 398.3 318 67.6
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 5.8e-109 398.3 323 65.0
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 1.3e-108 397.1 307 67.1
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 6.4e-108 394.8 315 66.7
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 5.4e-107 391.7 321 65.7
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 5.4e-107 391.7 327 64.2
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 1.2e-106 390.6 294 68.0
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 3.5e-106 389.0 323 65.6
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 4.6e-106 388.7 318 66.0
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 6.0e-106 388.3 325 63.1
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 6.0e-106 388.3 322 65.2
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 1.0e-105 387.5 313 64.2
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 1.0e-105 387.5 321 64.5
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.3e-105 387.1 322 64.6
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 2.3e-105 386.3 285 70.2
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 2.3e-105 386.3 324 63.3
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 5.1e-105 385.2 316 64.6
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 6.6e-105 384.8 317 64.7
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 8.6e-105 384.4 311 65.9
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 8.6e-105 384.4 283 71.0
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 8.6e-105 384.4 310 65.2
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 8.6e-105 384.4 311 65.6
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 1.5e-104 383.6 321 64.8
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 2.5e-104 382.9 305 65.6
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 5.6e-104 381.7 310 66.1
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 6.2e-103 378.3 317 64.0
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.4e-102 377.1 288 66.0
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 1.4e-102 377.1 319 66.8
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 1.8e-102 376.7 284 68.3
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 2.3e-102 376.3 320 62.8
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 2.3e-102 376.3 335 62.4
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 3.1e-102 375.9 287 66.2
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 1.2e-101 374.0 320 62.8
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 2.6e-101 372.9 310 63.9
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 3.4e-101 372.5 317 62.8
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 4.4e-101 372.1 321 63.6
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 5.8e-101 371.7 329 62.0
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 9.9e-101 370.9 324 62.3
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 1.3e-100 370.5 321 63.2
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 8.3e-100 367.9 324 62.3
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.9e-99 366.7 320 60.9
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 1.9e-99 366.7 321 62.9
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.4e-99 366.3 320 60.9
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.4e-99 366.3 320 60.9
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 3.2e-99 365.9 313 62.6
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 3.2e-99 365.9 303 64.4
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 3.2e-99 365.9 322 61.8
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 9.2e-99 364.4 317 62.1
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 9.2e-99 364.4 317 62.1
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 9.2e-99 364.4 317 62.8
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.2e-98 364.0 320 60.6
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 1.2e-98 364.0 320 60.9
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 2.7e-98 362.8 314 62.7
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 3.0e-97 359.4 322 61.2
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 3.9e-97 359.0 291 64.6
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 3.9e-97 359.0 286 63.6
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 5.1e-97 358.6 321 61.1
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 5.1e-97 358.6 321 61.1
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 6.6e-97 358.2 319 62.7
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 8.6e-97 357.8 310 62.3
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 8.6e-97 357.8 317 61.5
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-96 357.5 317 61.5
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 9.6e-96 354.4 317 61.2
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 9.6e-96 354.4 317 61.2
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 4.7e-95 352.1 296 61.8
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.1e-94 350.9 250 70.4
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 1.4e-94 350.5 317 60.3
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 2.4e-94 349.7 351 57.0
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 3.1e-94 349.4 301 62.5
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 5.2e-94 348.6 315 60.3
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 1.2e-93 347.4 317 58.7
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 3.4e-93 345.9 322 59.3
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 9.9e-93 344.4 300 62.7
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.3e-92 344.0 330 62.1
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 2.4e-91 339.7 346 59.0
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 5.4e-91 338.6 317 59.6
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 6.0e-90 335.1 335 56.7
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 3.4e-85 319.3 330 54.2
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.4e-83 313.2 384 50.8
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 3.3e-80 302.8 314 55.1
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 7.3e-80 301.6 315 55.6
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 9.6e-80 301.2 294 56.1
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 9.0e-78 294.7 331 52.9
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 2.9e-76 289.7 330 50.9
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 1.8e-73 280.4 320 52.2
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 1.8e-73 280.4 322 51.9
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 2.3e-73 280.0 321 52.3
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 4.8e-71 272.3 327 49.5
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 6.9e-70 268.5 325 55.4
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 6.9e-70 268.5 251 57.0
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 6.0e-66 255.4 167 74.9
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 3.0e-65 253.1 307 50.8
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 2.5e-64 250.0 266 53.4
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 4.3e-64 249.2 327 49.5
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 1.4e-59 234.2 229 59.8
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.2e-58 231.1 177 68.4
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 6.1e-58 228.8 257 54.1
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 1.4e-54 217.6 237 54.4
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 3.6e-50 203.0 148 66.9
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.4e-46 191.0 190 61.6
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.0e-45 187.2 136 71.3
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 8.5e-44 181.8 303 40.6
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 4.7e-42 176.0 177 57.6
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 9.1e-38 161.8 177 56.5
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.7e-36 157.5 156 60.3
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.5e-32 144.4 119 70.6
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 2.7e-26 123.6 350 33.7
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 3.6e-26 123.2 146 53.4
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 8.8e-25 118.6 305 32.8
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 7.2e-19 99.0 79 60.8
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 1.8e-17 94.4 99 54.5
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-16 91.7 72 61.1
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.1e-14 85.1 78 59.0
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 1.4e-14 84.7 61 72.1
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 5.9e-13 79.3 89 47.2
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 6.8e-09 65.9 67 52.2
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 1.2e-08 65.1 81 45.7
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 4.9e-07 59.7 38 78.9
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 1.8e-06 57.8 60 50.0
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 4.1e-06 56.6 92 41.3
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 5.4e-06 56.2 57 54.4


User provided reference genes

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