Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 1.5e-100 369.8 227 100.0
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 5.8e-92 341.3 227 88.1
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.6e-78 296.6 227 83.3
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 4.0e-77 292.0 227 68.7
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 1.7e-75 286.6 232 75.0
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 2.9e-75 285.8 231 76.2
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 6.5e-75 284.6 227 72.7
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 6.5e-75 284.6 227 71.4
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.1e-74 283.9 233 70.8
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-74 283.9 227 76.7
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 1.4e-74 283.5 232 75.4
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 1.9e-74 283.1 231 72.7
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 3.2e-74 282.3 232 72.4
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 4.2e-74 282.0 227 80.2
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.2e-74 282.0 232 76.7
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.5e-74 281.6 232 71.1
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.5e-74 281.6 232 71.1
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 5.5e-74 281.6 231 77.9
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 5.5e-74 281.6 231 74.5
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 9.3e-74 280.8 232 71.6
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 9.3e-74 280.8 233 72.5
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 9.3e-74 280.8 233 72.5
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.2e-73 280.4 232 70.7
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 1.2e-73 280.4 227 71.4
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.6e-73 280.0 232 73.7
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 2.1e-73 279.6 232 70.3
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 2.1e-73 279.6 232 73.7
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 2.7e-73 279.3 232 74.1
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 2.7e-73 279.3 232 70.3
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.7e-73 279.3 227 81.9
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 3.5e-73 278.9 232 73.7
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 4.6e-73 278.5 232 69.8
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 4.6e-73 278.5 232 69.8
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 4.6e-73 278.5 232 77.6
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 4.6e-73 278.5 232 75.4
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.6e-73 278.5 232 72.8
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 6.0e-73 278.1 232 75.4
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 6.0e-73 278.1 234 73.1
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 7.9e-73 277.7 233 70.8
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 1.0e-72 277.3 247 66.0
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.0e-72 277.3 232 70.3
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 1.3e-72 276.9 232 76.7
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.3e-72 276.9 234 72.2
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 1.3e-72 276.9 233 73.8
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 1.3e-72 276.9 232 70.3
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-72 276.9 227 81.9
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.8e-72 276.6 227 82.4
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-72 276.6 227 81.5
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 3.0e-72 275.8 233 79.0
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 3.9e-72 275.4 233 70.0
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 3.9e-72 275.4 233 70.0
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 3.9e-72 275.4 232 70.3
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 5.1e-72 275.0 232 69.4
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 5.1e-72 275.0 232 73.7
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 5.1e-72 275.0 231 76.6
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 6.7e-72 274.6 232 72.8
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 8.7e-72 274.2 233 70.0
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 1.5e-71 273.5 233 69.5
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 1.5e-71 273.5 232 69.0
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 1.5e-71 273.5 232 79.7
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 1.5e-71 273.5 227 71.4
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 1.5e-71 273.5 233 70.4
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.5e-71 273.5 227 80.6
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.5e-71 273.5 236 72.0
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.9e-71 273.1 236 69.5
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.5e-71 272.7 234 71.4
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 2.5e-71 272.7 232 70.7
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 2.5e-71 272.7 232 68.1
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 3.3e-71 272.3 232 69.0
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 3.3e-71 272.3 231 70.1
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 3.3e-71 272.3 232 69.0
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 3.3e-71 272.3 232 73.3
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 5.7e-71 271.6 232 71.1
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 5.7e-71 271.6 232 69.4
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 7.4e-71 271.2 232 73.7
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 9.6e-71 270.8 234 69.2
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 9.6e-71 270.8 230 68.3
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 9.6e-71 270.8 232 72.0
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.3e-70 270.4 233 69.1
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.3e-70 270.4 233 69.1
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 1.3e-70 270.4 232 68.5
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.6e-70 270.0 234 76.1
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.1e-70 269.6 234 72.2
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 2.8e-70 269.2 231 75.8
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 2.8e-70 269.2 233 76.0
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.8e-70 269.2 232 68.1
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 4.8e-70 268.5 232 76.7
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 6.2e-70 268.1 233 68.7
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 6.2e-70 268.1 234 69.2
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 6.2e-70 268.1 233 68.7
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 6.2e-70 268.1 234 69.2
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 6.2e-70 268.1 233 68.7
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 6.2e-70 268.1 223 77.6
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 1.1e-69 267.3 232 72.4
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.1e-69 267.3 234 72.6
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.4e-69 266.9 227 70.9
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.4e-69 266.9 233 72.5
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 1.8e-69 266.5 231 64.9
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 1.8e-69 266.5 232 68.1
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 2.4e-69 266.2 236 74.6
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.4e-69 266.2 234 77.8
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 2.4e-69 266.2 234 77.8
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 5.3e-69 265.0 232 64.2
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.5e-68 263.5 238 73.1
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 2.0e-68 263.1 236 66.5
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 4.5e-68 261.9 244 67.2
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 4.5e-68 261.9 232 62.1
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.2e-67 259.6 234 64.1
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 2.2e-67 259.6 234 64.5
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 2.2e-67 259.6 233 65.2
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 3.8e-67 258.8 232 74.1
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 2.5e-66 256.1 234 65.0
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 3.2e-66 255.8 227 67.4
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.2e-65 253.8 234 62.0
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.6e-65 253.4 232 67.2
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 2.1e-65 253.1 234 64.5
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 2.1e-65 253.1 234 64.5
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 2.7e-65 252.7 234 66.2
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 4.6e-65 251.9 234 67.1
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 6.1e-65 251.5 233 70.4
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 7.9e-65 251.1 232 67.7
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 1.3e-64 250.4 232 73.3
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 3.0e-64 249.2 232 65.5
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 3.9e-64 248.8 230 75.7
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 1.1e-63 247.3 228 65.8
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.1e-63 247.3 232 65.1
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.5e-63 246.9 234 59.8
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 6.3e-62 241.5 234 61.1
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 8.2e-62 241.1 218 69.7
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 8.2e-62 241.1 234 62.8
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 1.8e-61 240.0 272 65.4
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 6.9e-61 238.0 232 73.7
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 1.5e-60 236.9 232 73.3
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 2.6e-60 236.1 252 54.8
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 7.7e-60 234.6 286 50.7
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 3.2e-58 229.2 227 62.6
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 8.2e-54 214.5 230 59.6
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 6.1e-49 198.4 248 62.9
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 6.7e-48 194.9 234 56.4
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 1.1e-45 187.6 191 63.4
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.3e-45 185.3 227 55.9
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 3.5e-44 182.6 140 82.9
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 1.8e-40 170.2 236 50.8
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-40 170.2 109 80.7
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.3e-40 169.9 109 80.7
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.1e-39 167.5 189 60.8
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.3e-39 166.0 109 78.9
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.7e-38 163.7 115 75.7
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 1.8e-37 160.2 241 47.3
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 4.1e-37 159.1 122 71.3
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 5.3e-37 158.7 145 69.7
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.3e-35 154.1 188 58.5
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.7e-35 153.7 122 68.9
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.7e-33 146.4 152 71.1
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 8.8e-32 141.4 114 66.7
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.4e-29 132.1 200 55.5
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 4.5e-28 129.0 93 68.8
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.3e-27 127.5 68 85.3
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 2.9e-27 126.3 94 67.0
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 3.8e-27 125.9 139 63.3
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 1.5e-26 124.0 95 66.3
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 2.5e-26 123.2 68 83.8
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 3.6e-25 119.4 227 43.6
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 9.8e-23 111.3 224 38.8
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 3.7e-22 109.4 70 77.1
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.8e-21 107.1 70 75.7
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 1.6e-20 104.0 67 77.6
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 2.0e-20 103.6 181 45.9
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 3.8e-19 99.4 87 58.6
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.2e-14 83.6 44 90.9
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 2.7e-12 76.6 53 71.7
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.9e-10 70.5 74 60.8
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 8.9e-08 61.6 121 33.9
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 2.6e-07 60.1 71 43.7


User provided reference genes

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