Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 0.0e+00 1266.9 620 100.0
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 3.2e-286 988.0 651 74.3
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 8.0e-285 983.4 651 73.4
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.1e-277 958.7 662 71.3
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 4.0e-276 954.5 654 71.6
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 9.7e-275 949.9 656 70.3
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 1.7e-274 949.1 677 70.2
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 3.7e-274 948.0 660 71.5
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 4.8e-274 947.6 655 71.0
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 1.8e-273 945.7 650 70.9
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 7.0e-273 943.7 654 70.8
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 1.2e-272 943.0 653 71.1
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 1.6e-272 942.6 658 71.0
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 1.0e-271 939.9 659 70.3
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 6.5e-271 937.2 650 71.5
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.9e-270 935.6 658 69.6
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 3.2e-270 934.9 657 70.2
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 7.2e-270 933.7 655 70.5
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 9.4e-270 933.3 657 69.6
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.2e-269 932.9 650 70.2
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 1.2e-269 932.9 706 66.4
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 1.6e-269 932.6 656 71.3
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 1.6e-269 932.6 657 70.2
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 4.7e-269 931.0 658 71.3
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 6.1e-269 930.6 650 70.2
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 1.0e-268 929.9 652 71.0
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 1.0e-268 929.9 655 69.0
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 1.4e-268 929.5 652 70.6
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 1.8e-268 929.1 651 70.4
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 2.3e-268 928.7 655 71.0
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 3.0e-268 928.3 656 70.4
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 8.8e-268 926.8 655 69.6
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 1.5e-267 926.0 651 69.7
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 1.5e-267 926.0 651 69.7
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 1.5e-267 926.0 655 69.8
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 3.4e-267 924.9 652 70.1
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 3.4e-267 924.9 658 69.6
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 4.4e-267 924.5 655 69.8
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 5.7e-267 924.1 655 70.1
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 5.7e-267 924.1 650 70.6
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 2.8e-266 921.8 651 69.4
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.8e-266 921.0 658 69.3
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 8.3e-266 920.2 655 69.3
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 1.4e-265 919.5 652 70.2
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 1.4e-265 919.5 653 70.3
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.4e-265 918.7 658 69.3
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 5.4e-265 917.5 652 69.6
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 7.0e-265 917.1 651 69.6
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 9.1e-265 916.8 654 69.7
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 1.2e-264 916.4 653 70.6
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 1.6e-264 916.0 651 69.4
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 2.0e-264 915.6 655 68.1
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 2.0e-264 915.6 650 70.0
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 2.0e-264 915.6 655 69.3
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 2.7e-264 915.2 655 69.0
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 3.5e-264 914.8 651 69.3
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 4.5e-264 914.4 651 69.3
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 7.7e-264 913.7 655 68.2
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 1.3e-263 912.9 653 70.3
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 2.3e-263 912.1 655 69.2
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 2.3e-263 912.1 655 69.2
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 5.0e-263 911.0 650 69.1
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 6.6e-263 910.6 652 67.9
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 8.6e-263 910.2 650 68.6
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 2.5e-262 908.7 655 69.0
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 7.2e-262 907.1 673 67.6
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 9.5e-262 906.7 678 67.3
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 2.1e-261 905.6 651 68.8
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 3.6e-261 904.8 709 65.7
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 8.0e-261 903.7 662 67.4
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 3.0e-260 901.7 650 68.2
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 6.8e-260 900.6 651 68.0
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.3e-258 896.3 656 68.1
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 1.1e-257 893.3 687 65.2
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 4.1e-257 891.3 651 67.7
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 2.0e-256 889.0 656 67.5
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 3.9e-255 884.8 703 63.6
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 1.9e-254 882.5 652 67.5
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 7.3e-254 880.6 655 67.0
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 1.2e-253 879.8 654 67.3
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.1e-252 875.2 667 67.0
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 2.6e-251 872.1 608 70.2
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.4e-251 871.3 684 65.2
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 1.9e-249 865.9 631 69.1
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.0e-248 862.4 685 63.8
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 4.6e-248 861.3 685 63.9
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 1.7e-247 859.4 667 63.9
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 2.3e-247 859.0 660 65.9
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 8.6e-247 857.1 655 65.8
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 4.3e-246 854.7 663 64.7
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 6.2e-245 850.9 657 65.0
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 1.2e-243 846.7 676 65.1
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 5.4e-241 837.8 668 63.0
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 3.9e-239 831.6 666 61.7
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 3.9e-239 831.6 657 62.7
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 1.1e-238 830.1 663 63.0
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 3.6e-237 825.1 698 60.7
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 8.1e-237 823.9 662 62.7
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 1.5e-235 819.7 666 61.1
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 4.9e-234 814.7 600 67.8
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 4.1e-233 811.6 666 62.6
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.3e-231 806.6 668 61.1
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 8.6e-231 803.9 566 70.1
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 8.6e-231 803.9 668 60.8
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 2.5e-230 802.4 595 68.6
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 2.8e-229 798.9 666 60.7
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 8.1e-229 797.3 566 69.6
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 8.9e-228 793.9 662 61.8
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 5.8e-227 791.2 551 70.6
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 9.9e-227 790.4 634 64.2
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 4.2e-225 785.0 801 53.4
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 1.4e-217 760.0 536 68.8
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 9.3e-217 757.3 645 62.2
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 9.0e-212 740.7 650 57.5
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 7.9e-208 727.6 867 49.0
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 3.1e-204 715.7 637 57.3
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 3.8e-202 708.8 507 68.8
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 1.9e-198 696.4 475 71.8
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 7.4e-198 694.5 668 55.2
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 1.9e-185 653.3 497 68.0
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.4e-172 610.5 625 53.6
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 2.4e-172 609.8 657 49.5
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 1.0e-170 604.4 657 49.2
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 8.0e-168 594.7 708 45.5
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 1.8e-167 593.6 387 74.7
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 3.7e-165 585.9 337 82.8
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.6e-160 570.5 647 49.0
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 2.0e-155 553.5 512 56.4
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.0e-154 551.2 499 59.3
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.4e-151 540.8 635 47.1
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 6.8e-151 538.5 337 78.0
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 2.6e-142 510.0 320 76.2
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 2.2e-141 506.9 665 45.0
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 7.5e-134 481.9 276 81.2
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.2e-123 448.0 342 67.8
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.9e-121 440.7 657 43.4
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.6e-121 439.1 618 42.1
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.3e-114 417.9 369 59.3
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 1.1e-105 388.3 309 66.7
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 5.6e-105 386.0 621 39.3
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 1.3e-101 374.8 355 58.6
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 3.7e-80 303.5 233 65.7
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 9.0e-79 298.9 404 43.1
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 1.2e-78 298.5 479 39.7
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 1.3e-77 295.0 230 63.5
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 2.2e-77 294.3 498 38.2
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 8.2e-72 275.8 641 31.0
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 2.2e-69 267.7 231 56.3
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 2.0e-65 254.6 274 51.1
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 1.1e-63 248.8 231 56.3
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.9e-63 246.1 201 60.2
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 6.1e-59 233.0 532 35.2
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 9.4e-44 182.6 255 42.7
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 2.7e-43 181.0 139 71.9
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.3e-40 172.2 145 65.5
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 6.3e-32 143.3 108 65.7
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 1.3e-29 135.6 112 61.6
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 3.8e-29 134.0 228 39.0
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 5.2e-26 123.6 126 52.4
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 1.5e-25 122.1 66 84.8
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 7.0e-23 113.2 61 77.0
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 1.3e-21 109.0 59 74.6
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 6.6e-21 106.7 69 69.6
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 3.3e-20 104.4 80 65.0
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 3.7e-16 90.9 92 54.3
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.1e-15 89.4 50 84.0
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 4.1e-15 87.4 65 66.2
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 1.6e-14 85.5 79 57.0
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 4.3e-12 77.4 78 55.1
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 9.5e-12 76.3 50 72.0
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 1.2e-11 75.9 41 82.9
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 7.5e-09 66.6 64 53.1
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 9.8e-09 66.2 45 66.7
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 1.1e-07 62.8 67 47.8
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.9e-07 62.0 48 54.2
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 1.6e-06 58.9 42 66.7
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 1.6e-06 58.9 80 40.0
SMO118G0255 Selaginella moellendorffii HOM05D000639 ORTHO05D006731 2.7e-06 58.2 252 24.6
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 3.5e-06 57.8 58 50.0
Lj6C676T4 Lonicera japonica HOM05D000639 ORTHO05D004019 3.5e-06 57.8 265 28.3
Lsat_1_v5_gn_5_53081 Lactuca sativa HOM05D000639 ORTHO05D004019 6.0e-06 57.0 271 26.6
Ah.14g080820 Amaranthus hybridus HOM05D000639 ORTHO05D005966 7.8e-06 56.6 119 32.8


User provided reference genes

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