Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 6.8e-115 417.5 243 100.0
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 2.0e-114 416.0 243 98.8
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 2.0e-114 416.0 243 98.8
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 5.1e-110 401.4 235 98.3
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 1.1e-96 357.1 242 79.8
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 9.3e-96 354.0 241 85.5
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 1.1e-93 347.1 241 85.5
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 1.9e-93 346.3 239 84.9
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 1.9e-93 346.3 241 86.3
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.3e-92 343.6 241 85.9
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.6e-92 343.2 239 86.2
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 6.2e-92 341.3 239 82.8
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.1e-91 340.5 241 82.6
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.1e-91 340.5 239 84.1
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 2.4e-91 339.3 241 81.7
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 5.3e-91 338.2 239 79.9
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 9.0e-91 337.4 241 73.9
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 3.4e-90 335.5 241 81.7
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 3.4e-90 335.5 239 83.3
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 3.4e-90 335.5 239 79.5
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 5.8e-90 334.7 241 79.3
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.3e-89 333.6 241 79.7
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 1.3e-89 333.6 237 73.8
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.7e-89 333.2 241 80.1
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 3.8e-89 332.0 239 82.0
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 4.9e-89 331.6 239 72.8
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 8.4e-89 330.9 241 79.3
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.1e-88 330.5 241 80.1
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.1e-88 330.5 239 83.3
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 1.1e-88 330.5 241 80.5
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.4e-88 330.1 239 80.8
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.4e-88 330.1 241 80.1
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 3.2e-88 328.9 241 79.3
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 3.2e-88 328.9 243 82.7
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 3.2e-88 328.9 241 78.8
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 4.2e-88 328.6 240 77.5
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 5.4e-88 328.2 239 80.3
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 5.4e-88 328.2 240 72.9
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 9.3e-88 327.4 239 81.6
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.7e-87 325.9 242 71.5
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 3.5e-87 325.5 241 79.7
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 3.5e-87 325.5 242 74.8
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 4.6e-87 325.1 241 75.9
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 6.0e-87 324.7 239 71.5
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 6.0e-87 324.7 241 72.2
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 7.9e-87 324.3 240 72.1
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.8e-86 323.2 242 75.2
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 2.3e-86 322.8 240 71.7
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.3e-86 322.8 239 71.1
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.0e-86 322.4 239 70.7
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 3.0e-86 322.4 239 72.4
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 3.0e-86 322.4 239 72.0
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.1e-86 321.6 239 70.7
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 6.7e-86 321.2 204 80.9
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 8.7e-86 320.9 249 70.7
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 1.1e-85 320.5 242 74.0
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.5e-85 320.1 242 74.0
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 3.3e-85 318.9 241 77.6
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 7.4e-85 317.8 243 76.5
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 9.6e-85 317.4 239 70.3
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.3e-84 317.0 242 74.0
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.3e-84 317.0 241 78.0
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.6e-84 316.6 242 73.6
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.4e-83 313.5 241 67.6
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.4e-83 313.5 228 78.5
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.4e-83 312.8 228 81.6
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 2.4e-83 312.8 241 78.0
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 2.4e-83 312.8 245 70.2
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 5.3e-83 311.6 240 70.8
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 6.9e-83 311.2 202 79.7
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 1.2e-82 310.5 243 74.5
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.2e-82 310.5 241 75.1
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 1.5e-82 310.1 200 81.0
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 4.5e-82 308.5 239 75.7
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 5.8e-82 308.1 241 66.8
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 5.8e-82 308.1 241 71.4
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 9.9e-82 307.4 242 69.8
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 9.9e-82 307.4 242 69.8
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 6.4e-81 304.7 240 74.2
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 6.4e-81 304.7 205 76.1
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 8.4e-81 304.3 241 74.3
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 8.4e-81 304.3 240 67.9
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.4e-80 303.5 241 70.1
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.4e-80 303.5 195 81.0
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.9e-80 303.1 241 73.4
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 3.2e-80 302.4 208 75.5
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 3.2e-80 302.4 204 77.0
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.2e-80 302.0 241 70.1
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 7.1e-80 301.2 199 78.4
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 7.1e-80 301.2 241 73.4
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 9.3e-80 300.8 245 64.9
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 2.7e-79 299.3 241 74.3
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 3.5e-79 298.9 204 76.5
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.8e-78 296.6 241 66.4
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.8e-78 296.6 242 72.3
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 1.1e-77 293.9 241 66.0
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.5e-77 293.5 241 67.2
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.3e-76 290.4 210 81.0
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.3e-76 290.4 229 73.4
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 3.7e-76 288.9 242 71.1
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 4.8e-76 288.5 242 71.1
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.1e-75 287.3 241 65.6
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.4e-75 287.0 202 75.2
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.8e-75 286.6 202 75.2
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 4.0e-75 285.4 206 73.8
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 1.3e-73 280.4 242 69.4
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.3e-73 280.4 230 68.7
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 6.5e-73 278.1 207 69.1
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 6.5e-73 278.1 207 69.1
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 8.4e-73 277.7 207 70.0
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.4e-72 276.9 207 69.6
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 1.4e-72 276.9 207 69.1
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 1.4e-72 276.9 207 69.1
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 1.9e-72 276.6 207 70.5
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 1.9e-72 276.6 207 70.0
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.6e-71 273.5 207 68.6
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 3.5e-71 272.3 183 74.9
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 3.5e-71 272.3 207 69.6
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 4.6e-71 271.9 243 66.3
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 1.0e-70 270.8 242 66.5
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 5.9e-66 255.0 239 56.9
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 7.7e-66 254.6 193 69.9
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.8e-65 252.3 179 72.1
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 3.8e-65 252.3 193 67.4
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.8e-59 233.4 193 63.2
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 3.2e-56 222.6 159 73.0
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 2.1e-55 219.9 206 61.2
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 1.0e-54 217.6 243 53.1
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 5.7e-53 211.8 192 59.4
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 3.2e-48 196.1 169 65.1
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 5.7e-45 185.3 133 72.2
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 1.8e-43 180.3 111 79.3
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.6e-39 167.2 206 52.4
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 8.8e-38 161.4 102 78.4
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 6.3e-36 155.2 177 49.2
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 1.0e-33 147.9 174 47.7
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 7.5e-29 131.7 182 40.7
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 2.0e-26 123.6 129 55.0
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 4.2e-24 115.9 87 64.4
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 2.3e-17 93.6 183 33.9
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 3.3e-16 89.7 89 66.3
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.6e-15 87.4 53 79.2
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.4e-14 84.3 88 55.7
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 1.7e-12 77.4 180 31.1
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 1.8e-06 57.4 81 45.7


User provided reference genes

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