Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZR7NP5 Arachis hypogaea HOM05D002658 ORTHO05D003000 4.7e-64 247.7 123 100.0
arahy.Tifrunner.gnm1.ann1.USEI7V Arachis hypogaea HOM05D002658 ORTHO05D003000 2.2e-45 185.7 143 71.3
arahy.Tifrunner.gnm1.ann1.W1BWJE Arachis hypogaea HOM05D002658 ORTHO05D003000 3.0e-42 175.3 228 49.6
arahy.Tifrunner.gnm1.ann1.ATL7J3 Arachis hypogaea HOM05D002658 ORTHO05D003000 1.5e-41 172.9 123 76.4
arahy.Tifrunner.gnm1.ann1.0M52J5 Arachis hypogaea HOM05D002658 ORTHO05D003000 4.3e-33 144.8 228 44.7
arahy.Tifrunner.gnm1.ann1.3J1WFH Arachis hypogaea HOM05D002658 ORTHO05D003000 4.9e-29 131.3 131 63.4
arahy.Tifrunner.gnm1.ann1.L3BXHZ Arachis hypogaea HOM05D002658 ORTHO05D003000 1.8e-26 122.9 80 78.8
arahy.Tifrunner.gnm1.ann1.2FX3XX Arachis hypogaea HOM05D015962 ORTHO05D003000 4.1e-23 111.7 107 58.9
Thecc.02G160500 Theobroma cacao HOM05D002658 ORTHO05D003000 5.5e-20 101.3 86 66.3
COL.COLO4_19606 Corchorus olitorius HOM05D002658 ORTHO05D003000 1.6e-19 99.8 90 62.2
Sc06g0007980 Simmondsia chinensis HOM05D002658 ORTHO05D003000 1.4e-18 96.7 80 62.5
arahy.Tifrunner.gnm1.ann1.UWF6SM Arachis hypogaea HOM05D015962 ORTHO05D003000 1.8e-18 96.3 109 54.1
Hund08548 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.8e-18 96.3 78 61.5
Ciclev10030875m.g Citrus clementina HOM05D002658 ORTHO05D003000 2.3e-18 95.9 82 59.8
Cpa.g.sc183.5 Carica papaya HOM05D002658 ORTHO05D003000 3.9e-18 95.1 79 64.6
MSTRG.432 Avicennia marina HOM05D002658 ORTHO05D003000 5.1e-18 94.7 80 63.8
TAR629G2145 Trochodendron aralioides HOM05D002658 ORTHO05D003000 5.1e-18 94.7 81 61.7
TAR629G3397 Trochodendron aralioides HOM05D002658 ORTHO05D003000 5.1e-18 94.7 81 61.7
Duzib248G1296 Durio zibethinus HOM05D002658 ORTHO05D003000 6.7e-18 94.4 81 61.7
Lj3g0010214 Lotus japonicus HOM05D002658 ORTHO05D003000 1.1e-17 93.6 81 61.7
MBI18_g11231_MAGBIO Magnolia biondii HOM05D002658 ORTHO05D003000 1.9e-17 92.8 81 64.2
Atru.chr11.1170 Acer truncatum HOM05D002658 ORTHO05D003000 2.5e-17 92.4 80 62.5
MSTRG.8085 Avicennia marina HOM05D002658 ORTHO05D003000 2.5e-17 92.4 80 63.8
Lalb_Chr01g0001461 Lupinus albus HOM05D002658 ORTHO05D003000 4.3e-17 91.7 85 56.5
Dinv17606 Davidia involucrata HOM05D002658 ORTHO05D003000 5.7e-17 91.3 80 61.2
Oeu006359.1 Olea europaea HOM05D002658 ORTHO05D003000 5.7e-17 91.3 82 58.5
Duzib052G0136 Durio zibethinus HOM05D002658 ORTHO05D003000 7.4e-17 90.9 86 60.5
Gohir.D13G061900 Gossypium hirsutum HOM05D002658 ORTHO05D003000 7.4e-17 90.9 86 60.5
Sed0005223 Sechium edule HOM05D002658 ORTHO05D003000 7.4e-17 90.9 82 62.2
Gohir.D01G014000 Gossypium hirsutum HOM05D002658 ORTHO05D003000 9.7e-17 90.5 81 61.7
Gorai.002G015800 Gossypium raimondii HOM05D002658 ORTHO05D003000 9.7e-17 90.5 81 61.7
Os04g0620700 Oryza sativa ssp. japonica HOM05D002658 ORTHO05D003000 9.7e-17 90.5 80 58.8
Duzib132G0973 Durio zibethinus HOM05D002658 ORTHO05D003000 1.3e-16 90.1 81 59.3
Gohir.A01G012800 Gossypium hirsutum HOM05D002658 ORTHO05D003000 1.3e-16 90.1 81 61.7
vmacro10896 Vaccinium macrocarpon HOM05D002658 ORTHO05D003000 1.3e-16 90.1 81 59.3
Glyma.11G101500 Glycine max HOM05D002658 ORTHO05D003000 1.7e-16 89.7 81 59.3
Gorai.008G149100 Gossypium raimondii HOM05D002658 ORTHO05D003000 1.7e-16 89.7 81 60.5
Ca_19028_v3 Cicer arietinum L. HOM05D002658 ORTHO05D003000 2.2e-16 89.4 80 61.2
Nn3g18649 Nelumbo nucifera HOM05D002658 ORTHO05D003000 2.2e-16 89.4 81 59.3
PGSC0003DMG400001191 Solanum tuberosum HOM05D002658 ORTHO05D003000 2.2e-16 89.4 88 55.7
Gorai.013G070400 Gossypium raimondii HOM05D002658 ORTHO05D003000 2.8e-16 89.0 86 59.3
Phvul.011G030600 Phaseolus vulgaris HOM05D002658 ORTHO05D003000 2.8e-16 89.0 83 59.0
FAN07G0595 Fragaria x ananassa HOM05D002658 ORTHO05D003000 3.7e-16 88.6 81 58.0
Gohir.D12G137566 Gossypium hirsutum HOM05D002658 ORTHO05D003000 3.7e-16 88.6 81 60.5
Glyma.12G027400 Glycine max HOM05D002658 ORTHO05D003000 4.8e-16 88.2 81 58.0
MD13G1006400 Malus domestica HOM05D002658 ORTHO05D003000 4.8e-16 88.2 83 59.0
TPR.G32352 Trifolium pratense HOM05D002658 ORTHO05D003000 4.8e-16 88.2 80 56.2
CDE02G0625 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 8.2e-16 87.4 80 56.2
ClCG10G011940 Citrullus lanatus HOM05D002658 ORTHO05D003000 8.2e-16 87.4 82 57.3
MBI02_g07021_MAGBIO Magnolia biondii HOM05D002658 ORTHO05D003000 8.2e-16 87.4 80 53.8
CsaV3_3G031420 Cucumis sativus L. HOM05D002658 ORTHO05D003000 1.1e-15 87.0 82 56.1
Potri.007G071100 Populus trichocarpa HOM05D002658 ORTHO05D003000 1.1e-15 87.0 94 55.3
Solyc02g014310.4 Solanum lycopersicum HOM05D002658 ORTHO05D003000 1.4e-15 86.7 87 54.0
Sopen02g003410 Solanum pennellii HOM05D002658 ORTHO05D003000 1.4e-15 86.7 87 54.0
MD16G1001600 Malus domestica HOM05D002658 ORTHO05D003000 1.8e-15 86.3 83 61.4
Prupe.1G346800 Prunus persica HOM05D002658 ORTHO05D003000 1.8e-15 86.3 81 61.7
arahy.Tifrunner.gnm1.ann1.CLNG3D Arachis hypogaea HOM05D015962 ORTHO05D003000 2.4e-15 85.9 47 91.5
RcHm_v2.0_Chr4g0446621 Rosa chinensis HOM05D002658 ORTHO05D003000 2.4e-15 85.9 84 59.5
Sed0002082 Sechium edule HOM05D002658 ORTHO05D003000 2.4e-15 85.9 82 54.9
Gohir.A13G060000 Gossypium hirsutum HOM05D002658 ORTHO05D003000 3.1e-15 85.5 100 52.0
Actinidia04307 Actinidia chinensis HOM05D002658 ORTHO05D003000 4.1e-15 85.1 81 55.6
THA.LOC104820414 Tarenaya hassleriana HOM05D002658 ORTHO05D003000 4.1e-15 85.1 107 44.9
MELO3C024024.2 Cucumis melo HOM05D002658 ORTHO05D003000 5.3e-15 84.7 82 54.9
CSS0029052 Camellia sinensis var. sinensis HOM05D002658 ORTHO05D003000 6.9e-15 84.3 81 58.0
QL03p044151 Quercus lobata HOM05D002658 ORTHO05D003000 6.9e-15 84.3 96 49.0
CDE01G0413 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 9.1e-15 84.0 78 57.7
CDE12G0003 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 9.1e-15 84.0 78 57.7
Lalb_Chr19g0139381 Lupinus albus HOM05D002658 ORTHO05D003000 9.1e-15 84.0 85 52.9
Medtr4g074930 Medicago truncatula HOM05D002658 ORTHO05D003000 9.1e-15 84.0 81 56.8
Psat7g173280 Pisum sativum HOM05D002658 ORTHO05D003000 9.1e-15 84.0 80 55.0
SGA_v2.0_scaffold99G29460 Striga asiatica HOM05D002658 ORTHO05D003000 9.1e-15 84.0 78 56.4
GSVIVG01012042001 Vitis vinifera HOM05D002658 ORTHO05D003000 9.1e-15 84.0 81 55.6
SalBow2G3648 Salvia bowleyana HOM05D002658 ORTHO05D003000 1.2e-14 83.6 82 53.7
CDE05G1740 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 1.5e-14 83.2 80 55.0
arahy.Tifrunner.gnm1.ann1.YS6756 Arachis hypogaea HOM05D015962 ORTHO05D003000 2.0e-14 82.8 46 87.0
Manes.04G057000 Manihot esculenta HOM05D002658 ORTHO05D003000 2.0e-14 82.8 85 57.6
Haze_11751 Corylus avellana HOM05D002658 ORTHO05D003000 2.6e-14 82.4 82 54.9
Lalb_Chr03g0024791 Lupinus albus HOM05D002658 ORTHO05D003000 2.6e-14 82.4 80 52.5
THA.LOC104810678 Tarenaya hassleriana HOM05D002658 ORTHO05D003000 2.6e-14 82.4 81 56.8
DCAR_023453 Daucus carota HOM05D002658 ORTHO05D003000 3.4e-14 82.0 80 51.2
CiPaw.06G060000 Carya illinoinensis HOM05D002658 ORTHO05D003000 4.5e-14 81.6 82 54.9
Nitab4.5_0000739g0010 Nicotiana tabacum HOM05D002658 ORTHO05D003000 4.5e-14 81.6 88 53.4
Nitab4.5_0002873g0020 Nicotiana tabacum HOM05D002658 ORTHO05D003000 4.5e-14 81.6 106 48.1
Potri.005G093100 Populus trichocarpa HOM05D002658 ORTHO05D003000 4.5e-14 81.6 83 57.8
Rhsim09G0074900 Rhododendron simsii HOM05D002658 ORTHO05D003000 5.9e-14 81.3 107 46.7
Sabra07G0059800 Salix brachista HOM05D002658 ORTHO05D003000 5.9e-14 81.3 94 53.2
Sabra05G0077200 Salix brachista HOM05D002658 ORTHO05D003000 7.7e-14 80.9 83 57.8
VMungo1127G1795 Vigna mungo HOM05D002658 ORTHO05D003000 1.0e-13 80.5 82 52.4
FAN12G1156 Fragaria x ananassa HOM05D002658 ORTHO05D003000 1.3e-13 80.1 87 50.6
TWI74G1649 Tripterygium wilfordii HOM05D002658 ORTHO05D003000 1.3e-13 80.1 79 54.4
FvH4_4g36861 Fragaria vesca HOM05D002658 ORTHO05D003000 1.7e-13 79.7 84 52.4
Hma1.2p1_1683F.1_g297380 Hydrangea macrophylla HOM05D002658 ORTHO05D003000 1.7e-13 79.7 127 43.3
EL10Ac9g22941 Beta vulgaris HOM05D002658 ORTHO05D003000 2.2e-13 79.3 80 53.8
Lsat_1_v5_gn_3_35601 Lactuca sativa HOM05D002658 ORTHO05D003000 2.9e-13 79.0 80 52.5
Oeu027908.2 Olea europaea HOM05D002658 ORTHO05D003000 2.9e-13 79.0 79 55.7
SalBow6G5085 Salvia bowleyana HOM05D002658 ORTHO05D003000 2.9e-13 79.0 80 56.2
Aqoxy3G04264 Aquilegia oxysepala HOM05D002658 ORTHO05D003000 3.8e-13 78.6 80 52.5
FAN17G0854 Fragaria x ananassa HOM05D002658 ORTHO05D003000 5.0e-13 78.2 84 52.4
Aa31LG10G5000 Aethionema arabicum HOM05D002658 ORTHO05D003000 6.5e-13 77.8 85 48.2
FAN08G3096 Fragaria x ananassa HOM05D002658 ORTHO05D003000 6.5e-13 77.8 83 54.2
TWI53G1249 Tripterygium wilfordii HOM05D002658 ORTHO05D003000 6.5e-13 77.8 79 55.7
Manes.04G053300 Manihot esculenta HOM05D002658 ORTHO05D003000 8.5e-13 77.4 85 52.9
Zm00001eb046260 Zea mays HOM05D002658 ORTHO05D003000 1.4e-12 76.6 80 45.0
Ah.01g012180 Amaranthus hybridus HOM05D002658 ORTHO05D003000 1.9e-12 76.3 81 53.1
Glyma.09G281700 Glycine max HOM05D002658 ORTHO05D003000 1.9e-12 76.3 81 50.6
SGA_v2.0_scaffold88G27231 Striga asiatica HOM05D002658 ORTHO05D003000 1.9e-12 76.3 113 43.4
Cc11_g00150 Coffea canephora HOM05D002658 ORTHO05D003000 3.2e-12 75.5 122 40.2
Lalb_Chr10g0095021 Lupinus albus HOM05D002658 ORTHO05D003000 3.2e-12 75.5 81 50.6
Peaxi162Scf00363g00520 Petunia axillaris HOM05D002658 ORTHO05D003000 3.2e-12 75.5 88 47.7
Glyma.20G004000 Glycine max HOM05D002658 ORTHO05D003000 4.2e-12 75.1 81 49.4
Lj3C850T20 Lonicera japonica HOM05D002658 ORTHO05D003000 5.5e-12 74.7 80 50.0
Lj6C719G16 Lonicera japonica HOM05D002658 ORTHO05D003000 5.5e-12 74.7 80 51.2
ATR1098G121 Amborella trichopoda HOM05D002658 ORTHO05D003000 9.4e-12 73.9 81 51.9
CANSAT56G3384 Cannabis sativa HOM05D002658 ORTHO05D003000 9.4e-12 73.9 80 50.0
DCAR_002573 Daucus carota HOM05D002658 ORTHO05D003000 9.4e-12 73.9 80 50.0
FvH4_5g39267 Fragaria vesca HOM05D002658 ORTHO05D003000 9.4e-12 73.9 83 53.0
HanXRQChr06g0171481 Helianthus annuus HOM05D002658 ORTHO05D003000 9.4e-12 73.9 81 49.4
Peaxi162Scf01412g00004 Petunia axillaris HOM05D002658 ORTHO05D003000 9.4e-12 73.9 81 49.4
Os08g0192900 Oryza sativa ssp. japonica HOM05D002658 ORTHO05D003000 1.2e-11 73.6 81 53.1
arahy.Tifrunner.gnm1.ann1.0NW6FM Arachis hypogaea HOM05D015962 ORTHO05D003000 1.6e-11 73.2 43 86.0
Thhalv10011361m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 2.1e-11 72.8 108 45.4
Lsat_1_v5_gn_4_65420 Lactuca sativa HOM05D002658 ORTHO05D003000 2.1e-11 72.8 80 47.5
PGR142G2595 Punica granatum HOM05D002658 ORTHO05D003000 3.6e-11 72.0 80 51.2
HPP92_026528 Vanilla planifolia HOM05D002658 ORTHO05D003000 3.6e-11 72.0 76 52.6
HPP92_026555 Vanilla planifolia HOM05D002658 ORTHO05D003000 3.6e-11 72.0 76 52.6
HanXRQChr17g0544851 Helianthus annuus HOM05D002658 ORTHO05D003000 4.7e-11 71.6 78 51.3
arahy.Tifrunner.gnm1.ann1.X9ZCKB Arachis hypogaea HOM05D003897 ORTHO05D003000 7.9e-11 70.9 43 81.4
BcaB02g11292 Brassica carinata HOM05D002658 ORTHO05D003000 1.4e-10 70.1 83 47.0
A08p04310 Brassica napus HOM05D002658 ORTHO05D003000 1.4e-10 70.1 83 47.0
ECA246G1081 Erigeron canadensis HOM05D002658 ORTHO05D003000 1.8e-10 69.7 80 45.0
HanXRQChr01g0028031 Helianthus annuus HOM05D002658 ORTHO05D003000 1.8e-10 69.7 81 48.1
Sp1g35830 Schrenkiella parvula HOM05D002658 ORTHO05D003000 1.8e-10 69.7 88 45.5
DCAR_002571 Daucus carota HOM05D002658 ORTHO05D003000 2.3e-10 69.3 80 40.0
Oeu028417.1 Olea europaea HOM05D002658 ORTHO05D003000 2.3e-10 69.3 79 46.8
BcaC08g43092 Brassica carinata HOM05D002658 ORTHO05D003000 3.9e-10 68.6 107 42.1
C06p03520 Brassica napus HOM05D002658 ORTHO05D003000 3.9e-10 68.6 107 42.1
Carub.0001s3809 Capsella rubella HOM05D002658 ORTHO05D003000 5.1e-10 68.2 84 47.6
Lj1g0013048 Lotus japonicus HOM05D002658 ORTHO05D003000 5.1e-10 68.2 84 41.7
A05p20830 Brassica napus HOM05D002658 ORTHO05D003000 6.7e-10 67.8 83 44.6
BolC6t35492H Brassica oleracea HOM05D002658 ORTHO05D003000 6.7e-10 67.8 88 44.3
BraA05t20989Z Brassica rapa HOM05D002658 ORTHO05D003000 6.7e-10 67.8 83 44.6
Thhalv10020940m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 6.7e-10 67.8 85 44.7
PSO782G1034 Papaver somniferum HOM05D002658 ORTHO05D003000 6.7e-10 67.8 125 39.2
unitig_749.g13339 Utricularia gibba HOM05D002658 ORTHO05D003000 8.8e-10 67.4 76 48.7
A06p04110 Brassica napus HOM05D002658 ORTHO05D003000 1.1e-09 67.0 88 45.5
A06p04130 Brassica napus HOM05D000335 ORTHO05D003000 1.1e-09 67.0 88 45.5
BraA06t23617Z Brassica rapa HOM05D002658 ORTHO05D003000 1.1e-09 67.0 88 45.5
BraA08t32458Z Brassica rapa HOM05D002658 ORTHO05D003000 1.1e-09 67.0 87 48.3
BcaC05g27545 Brassica carinata HOM05D002658 ORTHO05D003000 1.5e-09 66.6 87 46.0
C05p35300 Brassica napus HOM05D002658 ORTHO05D003000 1.5e-09 66.6 87 46.0
BolC5t32244H Brassica oleracea HOM05D002658 ORTHO05D003000 1.5e-09 66.6 87 46.0
ECA233G2635 Erigeron canadensis HOM05D000058 ORTHO05D000077 1.5e-09 66.6 81 44.4
Psat2g041480 Pisum sativum HOM05D002658 ORTHO05D003000 1.5e-09 66.6 78 44.9
ECA234G2787 Erigeron canadensis HOM05D002658 ORTHO05D003000 2.0e-09 66.2 80 47.5
Migut.E00700 Erythranthe guttata HOM05D002658 ORTHO05D003000 2.6e-09 65.9 79 50.6
TPR.G17465 Trifolium pratense HOM05D002658 ORTHO05D003000 2.6e-09 65.9 80 43.8
AT3G18610 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 3.3e-09 65.5 80 48.8
BcaB04g17378 Brassica carinata HOM05D002658 ORTHO05D003000 3.3e-09 65.5 89 47.2
CARHR038910 Cardamine hirsuta HOM05D002658 ORTHO05D003000 3.3e-09 65.5 85 45.9
PSO063G2038 Papaver somniferum HOM05D002658 ORTHO05D003000 3.3e-09 65.5 80 47.5
TPR.G8252 Trifolium pratense HOM05D002658 ORTHO05D003000 3.3e-09 65.5 78 44.9
VMungo0251G3241 Vigna mungo HOM05D002658 ORTHO05D003000 3.3e-09 65.5 80 45.0
C08p04580 Brassica napus HOM05D002658 ORTHO05D003000 4.4e-09 65.1 81 48.1
BolC8t47262H Brassica oleracea HOM05D002658 ORTHO05D003000 4.4e-09 65.1 81 48.1
AL3G31920 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 7.4e-09 64.3 80 50.0
CARHR093990 Cardamine hirsuta HOM05D002658 ORTHO05D003000 7.4e-09 64.3 80 45.0
AL1G55750 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 1.7e-08 63.2 87 42.5
Ca_26908_v3 Cicer arietinum L. HOM05D002658 ORTHO05D003000 3.7e-08 62.0 78 42.3
AT1G48920 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 4.8e-08 61.6 87 42.5
Medtr1g036430 Medicago truncatula HOM05D002658 ORTHO05D003000 6.3e-08 61.2 78 41.0
Phvul.003G282900 Phaseolus vulgaris HOM05D002658 ORTHO05D003000 8.2e-08 60.8 80 41.2
Zm00001eb171320 Zea mays HOM05D002658 ORTHO05D003000 1.1e-07 60.5 78 43.6
BcaB07g33701 Brassica carinata HOM05D002658 ORTHO05D003000 1.4e-07 60.1 83 44.6
arahy.Tifrunner.gnm1.ann1.N3JAWC Arachis hypogaea HOM05D015962 ORTHO05D085643 1.8e-07 59.7 33 84.8
Psat6g098720 Pisum sativum HOM05D002658 ORTHO05D003000 2.4e-07 59.3 78 41.0
SEGI_11850 Sequoiadendron giganteum HOM05D002658 ORTHO05D003000 7.0e-07 57.8 115 33.0
Sabra03G0071600 Salix brachista HOM05D002658 ORTHO05D003000 1.2e-06 57.0 62 53.2
Carub.0003s1839 Capsella rubella HOM05D002658 ORTHO05D003000 4.5e-06 55.1 85 37.6
arahy.Tifrunner.gnm1.ann1.I4XWR0 Arachis hypogaea HOM05D003897 ORTHO05D005095 5.9e-06 54.7 50 66.0
Zm00001eb090640 Zea mays HOM05D002658 ORTHO05D003000 5.9e-06 54.7 78 41.0
arahy.Tifrunner.gnm1.ann1.7FBU4T Arachis hypogaea HOM05D003897 ORTHO05D005095 7.7e-06 54.3 52 65.4
arahy.Tifrunner.gnm1.ann1.9R7E2G Arachis hypogaea HOM05D003897 ORTHO05D005095 7.7e-06 54.3 52 65.4


User provided reference genes

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