Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 0.0e+00 1456.8 717 100.0
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 0.0e+00 1430.6 717 98.2
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 0.0e+00 1228.0 714 83.8
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 0.0e+00 1220.7 714 83.1
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 0.0e+00 1220.3 715 83.1
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 0.0e+00 1212.2 712 83.3
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 0.0e+00 1203.3 719 82.1
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 0.0e+00 1188.3 717 81.3
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1085.9 720 74.0
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1085.1 720 73.8
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 0.0e+00 1085.1 648 81.3
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 4.9e-312 1074.3 708 74.3
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 3.4e-311 1071.2 707 73.7
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 9.8e-311 1069.7 720 72.6
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 2.4e-309 1065.1 718 72.7
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 9.1e-309 1063.1 716 72.5
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 3.5e-308 1061.2 720 73.3
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 1.3e-307 1059.3 720 73.2
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 4.2e-306 1054.3 721 71.4
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 2.3e-304 1048.5 712 72.2
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 3.0e-304 1048.1 710 71.1
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 1.5e-303 1045.8 707 71.9
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 5.7e-303 1043.9 708 71.8
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 2.2e-302 1042.0 719 70.8
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 3.7e-302 1041.2 708 71.6
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 4.9e-302 1040.8 720 72.1
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.4e-301 1039.3 720 72.1
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 3.1e-301 1038.1 720 70.8
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 2.7e-300 1035.0 720 70.6
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.2e-297 1026.2 719 70.0
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 4.4e-295 1017.7 711 70.3
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 2.9e-294 1015.0 720 71.0
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 2.4e-293 1011.9 731 68.5
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 1.4e-288 996.1 567 84.8
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 2.0e-287 992.3 709 68.0
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 7.5e-287 990.3 710 68.2
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 8.3e-286 986.9 709 67.1
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 1.1e-285 986.5 716 68.3
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 1.6e-284 982.6 710 67.6
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 2.3e-283 978.8 710 67.2
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 6.6e-283 977.2 705 67.2
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 1.6e-281 972.6 705 67.4
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 3.6e-281 971.5 710 66.2
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 1.8e-280 969.1 709 66.4
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 2.9e-278 961.8 648 72.5
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 3.7e-278 961.4 723 66.5
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 8.3e-278 960.3 695 67.6
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 8.3e-278 960.3 707 66.3
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 1.4e-277 959.5 697 65.6
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 1.9e-277 959.1 713 65.9
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 1.9e-277 959.1 724 66.7
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 6.0e-276 954.1 706 64.9
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 7.8e-276 953.7 716 65.9
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 1.0e-275 953.4 705 66.1
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 2.5e-274 948.7 708 64.8
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 3.3e-274 948.3 693 68.5
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 4.3e-274 948.0 715 67.0
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 4.3e-274 948.0 709 67.3
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 7.3e-274 947.2 631 72.3
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 1.2e-273 946.4 714 64.3
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 8.1e-273 943.7 721 64.6
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 1.4e-272 943.0 710 64.4
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 1.8e-272 942.6 716 66.2
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 4.0e-272 941.4 708 64.0
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 8.9e-272 940.3 708 64.0
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 2.0e-271 939.1 716 65.2
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 2.6e-271 938.7 709 63.6
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 1.3e-270 936.4 720 63.2
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 3.8e-270 934.9 723 64.5
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 4.9e-270 934.5 716 63.8
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.4e-269 932.9 707 65.3
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 1.9e-269 932.6 721 64.1
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 9.2e-269 930.2 720 62.5
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 1.6e-268 929.5 710 63.5
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 2.3e-267 925.6 719 63.8
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 6.6e-267 924.1 714 64.1
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 2.5e-266 922.2 651 69.4
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 9.6e-266 920.2 729 63.0
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 3.5e-260 901.7 638 69.1
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.9e-258 896.0 714 62.0
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.5e-258 895.6 717 64.0
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 2.8e-257 892.1 629 69.8
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 8.1e-257 890.6 723 62.5
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 8.1e-257 890.6 625 69.8
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 1.1e-256 890.2 725 60.7
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.8e-256 889.4 988 50.7
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 2.9e-254 882.1 542 78.2
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 2.4e-253 879.0 724 60.1
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 5.4e-253 877.9 714 60.5
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 6.0e-252 874.4 706 62.3
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 5.3e-248 861.3 593 70.2
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 8.4e-246 854.0 584 70.7
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.3e-235 820.1 725 58.8
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 3.0e-227 792.3 872 49.2
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.9e-222 775.8 982 47.6
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 7.4e-210 734.6 693 56.4
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 3.2e-197 692.6 453 75.1
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 1.3e-182 644.0 364 85.2
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 5.2e-179 632.1 735 45.9
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 1.0e-174 617.8 470 63.6
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 6.0e-159 565.5 701 43.7
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 2.5e-149 533.5 630 45.2
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.1e-135 487.3 435 56.6
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 3.0e-126 456.8 367 60.2
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 1.1e-125 454.9 263 82.1
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 5.0e-105 386.3 267 70.4
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 2.9e-97 360.5 260 68.1
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 9.4e-96 355.5 226 77.9
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 8.8e-86 322.4 291 57.7
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 8.9e-70 269.2 167 80.2
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 1.2e-63 248.8 270 50.0
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 1.4e-59 235.3 149 71.1
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 1.4e-46 192.2 154 65.6
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 3.4e-45 187.6 257 41.2
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.5e-40 171.4 206 45.1
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 7.3e-40 169.9 258 38.4
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 4.7e-39 167.2 98 87.8
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 2.4e-38 164.9 115 76.5
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 5.2e-38 163.7 117 74.4
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 2.5e-32 144.8 104 76.0
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 4.8e-31 140.6 155 45.8
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.7e-28 132.1 131 55.7
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.7e-28 132.1 109 56.0
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 1.4e-27 129.0 107 64.5
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-26 125.6 169 39.6
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.1e-26 125.2 98 61.2
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 1.3e-23 115.9 83 61.4
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 5.3e-22 110.5 109 51.4
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 2.4e-19 101.7 94 54.3
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 5.5e-19 100.5 109 48.6
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.2e-18 99.4 64 68.8
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 1.6e-18 99.0 109 47.7
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 2.7e-18 98.2 75 69.3
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 1.8e-17 95.5 104 57.7
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 2.3e-17 95.1 61 68.9
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 2.5e-16 91.7 67 64.2
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 4.0e-14 84.3 98 50.0
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 4.0e-14 84.3 165 30.9
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 4.0e-14 84.3 85 50.6
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 9.0e-14 83.2 625 21.8
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 2.6e-13 81.6 53 73.6
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 2.6e-13 81.6 58 63.8
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 2.6e-13 81.6 77 59.7
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 8.4e-12 76.6 57 63.2
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 1.4e-11 75.9 57 64.9
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 1.4e-11 75.9 57 64.9
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 7.1e-11 73.6 129 36.4
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 9.3e-11 73.2 51 64.7
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 1.6e-10 72.4 54 59.3
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-10 72.0 108 38.0
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 2.7e-10 71.6 57 61.4
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 5.1e-09 67.4 48 66.7
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 8.2e-07 60.1 33 78.8


User provided reference genes

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