Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z7MJ9S Arachis hypogaea HOM05D005501 ORTHO05D007485 7.0e-37 156.8 78 100.0
arahy.Tifrunner.gnm1.ann1.M89JWR Arachis hypogaea HOM05D005501 ORTHO05D007485 5.7e-23 110.5 72 80.6
arahy.Tifrunner.gnm1.ann1.J20DWG Arachis hypogaea HOM05D005501 ORTHO05D007485 4.0e-16 87.8 76 68.4
Psat0s3070g0040 Pisum sativum HOM05D005501 ORTHO05D007485 3.2e-13 78.2 72 61.1
Ca_19945_v3 Cicer arietinum L. HOM05D005501 ORTHO05D007485 7.0e-13 77.0 72 61.1
VMungo0331G1483 Vigna mungo HOM05D005501 ORTHO05D007485 7.0e-13 77.0 72 59.7
Lalb_Chr07g0189951 Lupinus albus HOM05D005501 ORTHO05D007485 9.2e-13 76.6 72 59.7
Phvul.010G081700 Phaseolus vulgaris HOM05D005501 ORTHO05D007485 9.2e-13 76.6 72 59.7
Medtr4g024920 Medicago truncatula HOM05D005501 ORTHO05D007485 1.2e-12 76.3 72 61.1
TPR.G7589 Trifolium pratense HOM05D005501 ORTHO05D007485 1.6e-12 75.9 72 59.7
Glyma.03G027900 Glycine max HOM05D005501 ORTHO05D007485 3.5e-12 74.7 72 59.7
MSTRG.20738 Avicennia marina HOM05D005501 ORTHO05D007485 7.8e-12 73.6 73 57.5
Lj3g0016597 Lotus japonicus HOM05D005501 ORTHO05D007485 1.7e-11 72.4 72 58.3
FAN03G0203 Fragaria x ananassa HOM05D005501 ORTHO05D007485 2.9e-11 71.6 65 60.0
Cpa.g.sc18.102 Carica papaya HOM05D005501 ORTHO05D007485 5.0e-11 70.9 72 55.6
DCAR_002088 Daucus carota HOM05D005501 ORTHO05D007485 6.6e-11 70.5 72 55.6
Nn1g01133 Nelumbo nucifera HOM05D005501 ORTHO05D007485 6.6e-11 70.5 72 56.9
Prupe.2G143300 Prunus persica HOM05D005501 ORTHO05D007485 6.6e-11 70.5 65 61.5
Dinv43691 Davidia involucrata HOM05D005501 ORTHO05D007485 8.6e-11 70.1 72 56.9
Actinidia12246 Actinidia chinensis HOM05D005501 ORTHO05D007485 1.1e-10 69.7 72 56.9
CANSAT56G2357 Cannabis sativa HOM05D005501 ORTHO05D007485 1.1e-10 69.7 65 60.0
CARHR140480 Cardamine hirsuta HOM05D005501 ORTHO05D007485 1.1e-10 69.7 74 54.1
Migut.B01618 Erythranthe guttata HOM05D005501 ORTHO05D007485 1.1e-10 69.7 67 59.7
Sed0021448 Sechium edule HOM05D005501 ORTHO05D007485 1.1e-10 69.7 65 58.5
CSS0010588 Camellia sinensis var. sinensis HOM05D005501 ORTHO05D007485 1.5e-10 69.3 72 56.9
CSS0024830 Camellia sinensis var. sinensis HOM05D005501 ORTHO05D007485 1.5e-10 69.3 72 56.9
Potri.014G067800 Populus trichocarpa HOM05D005501 ORTHO05D007485 1.5e-10 69.3 65 60.0
RcHm_v2.0_Chr1g0349931 Rosa chinensis HOM05D005501 ORTHO05D007485 1.5e-10 69.3 65 58.5
TWI14G0369 Tripterygium wilfordii HOM05D005501 ORTHO05D007485 1.5e-10 69.3 72 54.2
GSVIVG01027664001 Vitis vinifera HOM05D005501 ORTHO05D007485 1.5e-10 69.3 65 60.0
FvH4_7g11490 Fragaria vesca HOM05D005501 ORTHO05D007485 1.9e-10 68.9 72 52.8
FAN06G2192 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.9e-10 68.9 72 52.8
FAN10G2689 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.9e-10 68.9 72 52.8
FAN10G2758 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.9e-10 68.9 72 52.8
Lj7C531T10 Lonicera japonica HOM05D005501 ORTHO05D007485 1.9e-10 68.9 70 57.1
FAN06G3216 Fragaria x ananassa HOM05D005501 ORTHO05D007485 2.5e-10 68.6 72 51.4
vmacro13416 Vaccinium macrocarpon HOM05D005501 ORTHO05D007485 2.5e-10 68.6 71 57.7
ClCG05G002370 Citrullus lanatus HOM05D005501 ORTHO05D007485 3.3e-10 68.2 65 58.5
Eucgr.E01449 Eucalyptus grandis HOM05D005501 ORTHO05D007485 3.3e-10 68.2 65 58.5
unitig_37.g12896 Utricularia gibba HOM05D005501 ORTHO05D007485 3.3e-10 68.2 72 55.6
Zm00001eb129920 Zea mays HOM05D005501 ORTHO05D007485 3.3e-10 68.2 71 53.5
COL.COLO4_12526 Corchorus olitorius HOM05D005501 ORTHO05D007485 4.3e-10 67.8 72 52.8
FAN01G2666 Fragaria x ananassa HOM05D005501 ORTHO05D007485 4.3e-10 67.8 65 56.9
MD02G1206900 Malus domestica HOM05D005501 ORTHO05D007485 4.3e-10 67.8 65 58.5
Manes.01G266900 Manihot esculenta HOM05D005501 ORTHO05D007485 4.3e-10 67.8 65 58.5
Sed0024444 Sechium edule HOM05D005501 ORTHO05D007485 4.3e-10 67.8 65 55.4
Aqoxy7G00665 Aquilegia oxysepala HOM05D005501 ORTHO05D007485 5.6e-10 67.4 72 55.6
PGR042G1853 Punica granatum HOM05D005501 ORTHO05D007485 5.6e-10 67.4 65 58.5
CiPaw.01G263800 Carya illinoinensis HOM05D005501 ORTHO05D007485 7.3e-10 67.0 72 52.8
ECA234G2802 Erigeron canadensis HOM05D003566 ORTHO05D007485 7.3e-10 67.0 73 54.8
MELO3C006202.2 Cucumis melo HOM05D005501 ORTHO05D007485 9.5e-10 66.6 65 56.9
CsaV3_3G009810 Cucumis sativus L. HOM05D005501 ORTHO05D007485 9.5e-10 66.6 65 56.9
HanXRQChr16g0519981 Helianthus annuus HOM05D005501 ORTHO05D007485 9.5e-10 66.6 72 55.6
Nitab4.5_0003912g0080 Nicotiana tabacum HOM05D005501 ORTHO05D007485 9.5e-10 66.6 72 52.8
RcHm_v2.0_Chr1g0349801 Rosa chinensis HOM05D005501 ORTHO05D007485 9.5e-10 66.6 65 56.9
Sc02g0002650 Simmondsia chinensis HOM05D005501 ORTHO05D007485 9.5e-10 66.6 71 54.9
A05p05250 Brassica napus HOM05D005501 ORTHO05D007485 1.2e-09 66.2 74 51.4
BolC4t22243H Brassica oleracea HOM05D005501 ORTHO05D007485 1.2e-09 66.2 74 51.4
BraA05t19495Z Brassica rapa HOM05D005501 ORTHO05D007485 1.2e-09 66.2 74 51.4
CDE11G1124 Ceratophyllum demersum HOM05D005501 ORTHO05D007485 1.2e-09 66.2 73 53.4
Aa31LG1G26800 Aethionema arabicum HOM05D005501 ORTHO05D007485 1.6e-09 65.9 72 52.8
Thhalv10001427m.g Eutrema salsugineum HOM05D005501 ORTHO05D007485 1.6e-09 65.9 72 52.8
Sp4g27290 Schrenkiella parvula HOM05D005501 ORTHO05D007485 1.6e-09 65.9 73 50.7
SpUn0031_0030 Schrenkiella parvula HOM05D005501 ORTHO05D007485 1.6e-09 65.9 73 50.7
Thecc.01G378900 Theobroma cacao HOM05D005501 ORTHO05D007485 1.6e-09 65.9 72 51.4
AL4G44370 Arabidopsis lyrata HOM05D005501 ORTHO05D007485 2.1e-09 65.5 72 52.8
AT2G45270 Arabidopsis thaliana HOM05D005501 ORTHO05D007485 2.1e-09 65.5 72 52.8
QL08p052809 Quercus lobata HOM05D005501 ORTHO05D007485 2.1e-09 65.5 72 50.0
BcaC02g12231 Brassica carinata HOM05D005501 ORTHO05D007485 2.8e-09 65.1 74 50.0
C04p06180 Brassica napus HOM05D005501 ORTHO05D007485 2.8e-09 65.1 74 50.0
CAN.G295.11 Capsicum annuum HOM05D005501 ORTHO05D007485 2.8e-09 65.1 72 52.8
Nitab4.5_0001329g0140 Nicotiana tabacum HOM05D005501 ORTHO05D007485 2.8e-09 65.1 72 52.8
Solyc05g050940.4 Solanum lycopersicum HOM05D005501 ORTHO05D007485 2.8e-09 65.1 72 52.8
PGSC0003DMG401007021 Solanum tuberosum HOM05D005501 ORTHO05D007485 2.8e-09 65.1 72 52.8
Ciclev10021173m.g Citrus clementina HOM05D005501 ORTHO05D007485 3.6e-09 64.7 65 56.9
TAR374G0513 Trochodendron aralioides HOM05D005501 ORTHO05D007485 3.6e-09 64.7 72 52.8
TAR374G1545 Trochodendron aralioides HOM05D005501 ORTHO05D007485 3.6e-09 64.7 72 52.8
EL10Ac1g00871 Beta vulgaris HOM05D005501 ORTHO05D007485 4.7e-09 64.3 65 55.4
Hund17031 Selenicereus undatus HOM05D005501 ORTHO05D007485 4.7e-09 64.3 72 51.4
THA.LOC104817237 Tarenaya hassleriana HOM05D005501 ORTHO05D007485 4.7e-09 64.3 72 51.4
Cc02_g24090 Coffea canephora HOM05D005501 ORTHO05D007485 6.2e-09 63.9 71 54.9
Gohir.A08G135800 Gossypium hirsutum HOM05D005501 ORTHO05D007485 6.2e-09 63.9 72 50.0
Gohir.D08G156600 Gossypium hirsutum HOM05D005501 ORTHO05D007485 6.2e-09 63.9 72 50.0
Gorai.004G162900 Gossypium raimondii HOM05D005501 ORTHO05D007485 6.2e-09 63.9 72 50.0
Peaxi162Scf00959g00124 Petunia axillaris HOM05D005501 ORTHO05D007485 6.2e-09 63.9 72 52.8
Sopen05g029410 Solanum pennellii HOM05D005501 ORTHO05D007485 8.0e-09 63.5 72 51.4
TAR375G0004 Trochodendron aralioides HOM05D005501 ORTHO05D007485 8.0e-09 63.5 72 52.8
BcaB02g08945 Brassica carinata HOM05D005501 ORTHO05D007485 1.0e-08 63.2 74 50.0
BcaB02g08946 Brassica carinata HOM05D005501 ORTHO05D007485 1.0e-08 63.2 74 50.0
Oeu055503.2 Olea europaea HOM05D005501 ORTHO05D007485 1.0e-08 63.2 73 49.3
Lsat_1_v5_gn_4_43120 Lactuca sativa HOM05D005501 ORTHO05D007485 1.4e-08 62.8 72 51.4
Sabra14G0047700 Salix brachista HOM05D005501 ORTHO05D007485 1.4e-08 62.8 65 55.4
Carub.0004s2787 Capsella rubella HOM05D005501 ORTHO05D007485 1.8e-08 62.4 72 51.4
PSO478G3019 Papaver somniferum HOM05D005501 ORTHO05D007485 1.8e-08 62.4 72 52.8
C04p08020 Brassica napus HOM05D005501 ORTHO05D007485 3.1e-08 61.6 74 50.0
Ah.05g176650 Amaranthus hybridus HOM05D005501 ORTHO05D007485 5.2e-08 60.8 72 48.6
Duzib133G0079 Durio zibethinus HOM05D005501 ORTHO05D007485 5.2e-08 60.8 72 47.2
AUR62004192 Chenopodium quinoa HOM05D005501 ORTHO05D007485 6.8e-08 60.5 65 53.8
ATR0757G194 Amborella trichopoda HOM05D005501 ORTHO05D007485 8.9e-08 60.1 72 48.6
PSO782G1940 Papaver somniferum HOM05D005501 ORTHO05D007485 2.0e-07 58.9 72 50.0
HPP92_000383 Vanilla planifolia HOM05D005501 ORTHO05D007485 2.0e-07 58.9 71 47.9
MBI04_g44162_MAGBIO Magnolia biondii HOM05D005501 ORTHO05D007485 5.8e-07 57.4 65 52.3
SMO271G0013 Selaginella moellendorffii HOM05D005501 ORTHO05D007485 4.9e-06 54.3 67 43.3
Atru.chr5.287 Acer truncatum HOM05D005501 ORTHO05D007485 8.3e-06 53.5 29 82.8
BcaC01g05144 Brassica carinata HOM05D005501 ORTHO05D007485 8.3e-06 53.5 56 51.8


User provided reference genes

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