Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YWJ1Q3 Arachis hypogaea HOM05D002650 ORTHO05D038855 1.3e-106 389.8 204 100.0
arahy.Tifrunner.gnm1.ann1.F0YWKB Arachis hypogaea HOM05D000324 ORTHO05D038855 5.5e-49 198.4 135 82.2
arahy.Tifrunner.gnm1.ann1.C8BV8A Arachis hypogaea HOM05D000882 ORTHO05D006555 1.1e-30 137.5 81 93.8
arahy.Tifrunner.gnm1.ann1.W5XP03 Arachis hypogaea HOM05D000882 ORTHO05D006555 1.1e-30 137.5 81 93.8
arahy.Tifrunner.gnm1.ann1.K69D77 Arachis hypogaea HOM05D002650 ORTHO05D002924 5.5e-17 92.0 68 67.6
arahy.Tifrunner.gnm1.ann1.4M845G Arachis hypogaea HOM05D002650 ORTHO05D002924 9.4e-17 91.3 43 95.3
arahy.Tifrunner.gnm1.ann1.2M7N28 Arachis hypogaea HOM05D008017 ORTHO05D009829 3.0e-15 86.3 44 95.5
arahy.Tifrunner.gnm1.ann1.D318AT Arachis hypogaea HOM05D008017 ORTHO05D009829 3.0e-15 86.3 44 95.5
Glyma.01G235700 Glycine max HOM05D002650 ORTHO05D002924 1.2e-14 84.3 42 88.1
Lalb_Chr09g0319991 Lupinus albus HOM05D002650 ORTHO05D002924 1.2e-14 84.3 67 59.7
Glyma.11G007500 Glycine max HOM05D002650 ORTHO05D002924 2.0e-14 83.6 42 88.1
Ca_24415_v3 Cicer arietinum L. HOM05D002650 ORTHO05D002924 4.4e-14 82.4 43 83.7
arahy.Tifrunner.gnm1.ann1.3EF69T Arachis hypogaea HOM05D008068 ORTHO05D009829 5.7e-14 82.0 47 85.1
arahy.Tifrunner.gnm1.ann1.UF2TDU Arachis hypogaea HOM05D008017 ORTHO05D009829 5.7e-14 82.0 47 85.1
Phvul.002G043200 Phaseolus vulgaris HOM05D002650 ORTHO05D002924 7.5e-14 81.6 67 55.2
TWI09G0495 Tripterygium wilfordii HOM05D002650 ORTHO05D002924 9.7e-14 81.3 42 83.3
Actinidia08479 Actinidia chinensis HOM05D002650 ORTHO05D002924 2.2e-13 80.1 86 50.0
Actinidia08475 Actinidia chinensis HOM05D002650 ORTHO05D002924 2.8e-13 79.7 78 55.1
QL06p001595 Quercus lobata HOM05D002650 ORTHO05D002924 2.8e-13 79.7 42 78.6
Manes.03G175500 Manihot esculenta HOM05D002650 ORTHO05D002924 3.7e-13 79.3 43 79.1
Phvul.007G170200 Phaseolus vulgaris HOM05D008017 ORTHO05D009829 4.8e-13 79.0 44 86.4
Dinv14024 Davidia involucrata HOM05D002650 ORTHO05D002924 6.3e-13 78.6 42 81.0
Cc03_g04080 Coffea canephora HOM05D002650 ORTHO05D002924 8.2e-13 78.2 42 81.0
MELO3C006514.2 Cucumis melo HOM05D002650 ORTHO05D002924 8.2e-13 78.2 42 76.2
LjContig00408g0012632 Lotus japonicus HOM05D002650 ORTHO05D002924 8.2e-13 78.2 43 81.4
CsaV3_3G013050 Cucumis sativus L. HOM05D002650 ORTHO05D002924 1.1e-12 77.8 42 76.2
Lj3A731G61 Lonicera japonica HOM05D002650 ORTHO05D002924 1.4e-12 77.4 42 81.0
arahy.Tifrunner.gnm1.ann1.W4M326 Arachis hypogaea HOM05D002650 ORTHO05D014694 1.8e-12 77.0 35 94.3
Cpa.g.sc58.73 Carica papaya HOM05D002650 ORTHO05D002924 1.8e-12 77.0 42 81.0
Cfa008466 Carpinus fangiana HOM05D002650 ORTHO05D002924 1.8e-12 77.0 42 76.2
ClCG05G005000 Citrullus lanatus HOM05D002650 ORTHO05D002924 1.8e-12 77.0 42 76.2
Haze_11208 Corylus avellana HOM05D002650 ORTHO05D002924 1.8e-12 77.0 42 76.2
VMungo0720G1670 Vigna mungo HOM05D008017 ORTHO05D009829 1.8e-12 77.0 43 86.0
VMungo1215G1359 Vigna mungo HOM05D002650 ORTHO05D002924 1.8e-12 77.0 42 78.6
CSS0049240 Camellia sinensis var. sinensis HOM05D002650 ORTHO05D002924 3.1e-12 76.3 42 78.6
CANSAT78G1249 Cannabis sativa HOM05D002650 ORTHO05D002924 3.1e-12 76.3 42 76.2
Nn1g02387 Nelumbo nucifera HOM05D002650 ORTHO05D002924 3.1e-12 76.3 42 81.0
GSVIVG01018014001 Vitis vinifera HOM05D002650 ORTHO05D002924 3.1e-12 76.3 42 76.2
FvH4_4g00720 Fragaria vesca HOM05D002650 ORTHO05D002924 4.1e-12 75.9 67 56.7
FAN12G3299 Fragaria x ananassa HOM05D002650 ORTHO05D002924 4.1e-12 75.9 67 56.7
PSO832G4510 Papaver somniferum HOM05D002650 ORTHO05D002924 4.1e-12 75.9 43 76.7
TPR.G37883 Trifolium pratense HOM05D002650 ORTHO05D002924 4.1e-12 75.9 42 76.2
Ca_09767_v3 Cicer arietinum L. HOM05D008017 ORTHO05D009829 5.3e-12 75.5 43 81.4
Hma1.2p1_1572F.1_g291490 Hydrangea macrophylla HOM05D002650 ORTHO05D002924 5.3e-12 75.5 42 78.6
Medtr1g072530 Medicago truncatula HOM05D008017 ORTHO05D009829 5.3e-12 75.5 42 83.3
Medtr5g006660 Medicago truncatula HOM05D002650 ORTHO05D002924 5.3e-12 75.5 42 78.6
Oeu010308.1 Olea europaea HOM05D002650 ORTHO05D002924 5.3e-12 75.5 42 81.0
Prupe.1G018300 Prunus persica HOM05D002650 ORTHO05D002924 5.3e-12 75.5 43 74.4
PGR129G0015 Punica granatum HOM05D002650 ORTHO05D002924 7.0e-12 75.1 42 78.6
PGR142G2346 Punica granatum HOM05D002650 ORTHO05D002924 7.0e-12 75.1 42 78.6
RcHm_v2.0_Chr4g0386441 Rosa chinensis HOM05D002650 ORTHO05D002924 7.0e-12 75.1 75 53.3
TAR362G0085 Trochodendron aralioides HOM05D002650 ORTHO05D002924 7.0e-12 75.1 42 76.2
CDE04G2869 Ceratophyllum demersum HOM05D002650 ORTHO05D002924 9.1e-12 74.7 43 76.7
FAN17G0389 Fragaria x ananassa HOM05D002650 ORTHO05D002924 9.1e-12 74.7 43 74.4
Glyma.02G148500 Glycine max HOM05D008017 ORTHO05D009829 9.1e-12 74.7 45 82.2
Sabra10G0058900 Salix brachista HOM05D002650 ORTHO05D002924 9.1e-12 74.7 42 78.6
unitig_46.g18610 Utricularia gibba HOM05D002650 ORTHO05D002924 9.1e-12 74.7 40 80.0
CiPaw.01G197800 Carya illinoinensis HOM05D002650 ORTHO05D002924 1.2e-11 74.3 42 76.2
Ciclev10004646m.g Citrus clementina HOM05D002650 ORTHO05D002924 1.2e-11 74.3 42 76.2
Rhsim02G0027100 Rhododendron simsii HOM05D002650 ORTHO05D002924 1.2e-11 74.3 42 73.8
TPR.G1572 Trifolium pratense HOM05D008017 ORTHO05D009829 1.2e-11 74.3 71 53.5
PSO210G7121 Papaver somniferum HOM05D002650 ORTHO05D002924 1.6e-11 73.9 43 74.4
FAN22G1889 Fragaria x ananassa HOM05D002650 ORTHO05D002924 2.0e-11 73.6 75 52.0
Psat6g060800 Pisum sativum HOM05D008017 ORTHO05D009829 2.0e-11 73.6 52 67.3
BcaC09g50160 Brassica carinata HOM05D002650 ORTHO05D002924 2.7e-11 73.2 42 76.2
BcaNung00333 Brassica carinata HOM05D002650 ORTHO05D002924 2.7e-11 73.2 42 76.2
A01p22760 Brassica napus HOM05D002650 ORTHO05D002924 2.7e-11 73.2 42 76.2
C01p28320 Brassica napus HOM05D002650 ORTHO05D002924 2.7e-11 73.2 42 76.2
BraA01t02188Z Brassica rapa HOM05D002650 ORTHO05D002924 2.7e-11 73.2 42 76.2
Eucgr.B01054 Eucalyptus grandis HOM05D002650 ORTHO05D002924 2.7e-11 73.2 42 76.2
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 2.7e-11 73.2 42 73.8
MD13G1197200 Malus domestica HOM05D002650 ORTHO05D002924 2.7e-11 73.2 43 72.1
MSTRG.24731 Avicennia marina HOM05D002650 ORTHO05D002924 3.5e-11 72.8 42 76.2
Potri.010G084100 Populus trichocarpa HOM05D002650 ORTHO05D002924 3.5e-11 72.8 42 76.2
THA.LOC104808563 Tarenaya hassleriana HOM05D002650 ORTHO05D002924 3.5e-11 72.8 42 73.8
BolC1t02761H Brassica oleracea HOM05D002650 ORTHO05D002924 4.5e-11 72.4 40 80.0
Gohir.D09G220400 Gossypium hirsutum HOM05D002650 ORTHO05D002924 4.5e-11 72.4 42 71.4
Gorai.006G241400 Gossypium raimondii HOM05D002650 ORTHO05D002924 4.5e-11 72.4 42 71.4
Lalb_Chr01g0020201 Lupinus albus HOM05D008017 ORTHO05D009829 4.5e-11 72.4 44 72.7
Nitab4.5_0000085g0370 Nicotiana tabacum HOM05D002650 ORTHO05D002924 4.5e-11 72.4 42 73.8
Nitab4.5_0001547g0040 Nicotiana tabacum HOM05D002650 ORTHO05D002924 4.5e-11 72.4 42 73.8
Peaxi162Scf00092g00119 Petunia axillaris HOM05D002650 ORTHO05D002924 4.5e-11 72.4 42 73.8
Sopen09g031260 Solanum pennellii HOM05D002650 ORTHO05D002924 4.5e-11 72.4 42 73.8
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 4.5e-11 72.4 42 71.4
Aa31LG9G2580 Aethionema arabicum HOM05D002650 ORTHO05D002924 5.9e-11 72.0 42 73.8
Sp7g12920 Schrenkiella parvula HOM05D002650 ORTHO05D002924 5.9e-11 72.0 42 73.8
Hund12093 Selenicereus undatus HOM05D002650 ORTHO05D002924 5.9e-11 72.0 82 45.1
Duzib052G0834 Durio zibethinus HOM05D002650 ORTHO05D002924 1.0e-10 71.2 42 69.0
Lj5g0002267 Lotus japonicus HOM05D008017 ORTHO05D009829 1.0e-10 71.2 75 50.7
Carub.0007s2734 Capsella rubella HOM05D002650 ORTHO05D002924 1.3e-10 70.9 42 71.4
COL.COLO4_21524 Corchorus olitorius HOM05D002650 ORTHO05D002924 1.3e-10 70.9 42 69.0
Sc13g0004600 Simmondsia chinensis HOM05D002650 ORTHO05D002924 1.3e-10 70.9 42 71.4
SGA_v2.0_scaffold79G25580 Striga asiatica HOM05D002650 ORTHO05D002924 1.3e-10 70.9 42 73.8
AL7G41080 Arabidopsis lyrata HOM05D002650 ORTHO05D002924 1.7e-10 70.5 42 71.4
AT4G14790 Arabidopsis thaliana HOM05D002650 ORTHO05D002924 1.7e-10 70.5 42 71.4
EL10Ac3g06476 Beta vulgaris HOM05D002650 ORTHO05D002924 1.7e-10 70.5 42 69.0
CAN.G1476.5 Capsicum annuum HOM05D002650 ORTHO05D002924 1.7e-10 70.5 42 73.8
CARHR221340 Cardamine hirsuta HOM05D002650 ORTHO05D002924 1.7e-10 70.5 42 71.4
ECA234G0728 Erigeron canadensis HOM05D002650 ORTHO05D002924 1.7e-10 70.5 42 73.8
HanXRQChr17g0564431 Helianthus annuus HOM05D002650 ORTHO05D002924 1.7e-10 70.5 42 71.4
Lsat_1_v5_gn_4_29301 Lactuca sativa HOM05D002650 ORTHO05D002924 1.7e-10 70.5 42 73.8
Atru.chr4.2421 Acer truncatum HOM05D002650 ORTHO05D002924 2.2e-10 70.1 42 71.4
AUR62033655 Chenopodium quinoa HOM05D002650 ORTHO05D002924 2.9e-10 69.7 42 71.4
Os03g0746500 Oryza sativa ssp. japonica HOM05D002650 ORTHO05D002924 3.8e-10 69.3 42 69.0
HPP92_024843 Vanilla planifolia HOM05D002650 ORTHO05D002924 3.8e-10 69.3 43 67.4
HPP92_026615 Vanilla planifolia HOM05D002650 ORTHO05D002924 3.8e-10 69.3 43 67.4
Migut.N00200 Erythranthe guttata HOM05D002650 ORTHO05D002924 5.0e-10 68.9 42 71.4
Aqoxy5G00427 Aquilegia oxysepala HOM05D002650 ORTHO05D002924 6.5e-10 68.6 42 66.7
DCAR_024177 Daucus carota HOM05D002650 ORTHO05D002924 6.5e-10 68.6 42 71.4
Gohir.A09G217900 Gossypium hirsutum HOM05D002650 ORTHO05D002924 6.5e-10 68.6 42 69.0
Zm00001eb057040 Zea mays HOM05D002650 ORTHO05D002924 1.5e-09 67.4 42 66.7
ATR0665G409 Amborella trichopoda HOM05D002650 ORTHO05D002924 2.5e-09 66.6 42 69.0
CiPaw.08G104100 Carya illinoinensis HOM05D008017 ORTHO05D009829 6.1e-08 62.0 45 64.4
SMO196G0191 Selaginella moellendorffii HOM05D002650 ORTHO05D002924 8.0e-08 61.6 42 64.3
Zm00001eb424200 Zea mays HOM05D002650 ORTHO05D051651 1.0e-07 61.2 43 55.8
Haze_04733 Corylus avellana HOM05D008017 ORTHO05D009829 1.4e-07 60.8 105 38.1
Zm00001eb080820 Zea mays HOM05D002650 ORTHO05D002924 1.8e-07 60.5 43 58.1
FAN24G0680 Fragaria x ananassa HOM05D008017 ORTHO05D009829 3.0e-07 59.7 44 56.8
Os04g0459800 Oryza sativa ssp. japonica HOM05D002650 ORTHO05D002924 3.0e-07 59.7 53 49.1
PRCOL_00000719 Prasinoderma coloniale HOM05D002650 ORTHO05D002924 3.0e-07 59.7 43 53.5
vmacro15359 Vaccinium macrocarpon HOM05D002650 ORTHO05D002924 3.0e-07 59.7 30 76.7
FvH4_2g23820 Fragaria vesca HOM05D008017 ORTHO05D009829 5.2e-07 58.9 43 55.8
FAN20G2511 Fragaria x ananassa HOM05D008017 ORTHO05D009829 5.2e-07 58.9 43 55.8
FAN27G1723 Fragaria x ananassa HOM05D008017 ORTHO05D009829 5.2e-07 58.9 43 55.8
Hma1.2p1_0257F.1_g103690 Hydrangea macrophylla HOM05D008017 ORTHO05D009829 6.8e-07 58.5 97 39.2
Cfa025470 Carpinus fangiana HOM05D002650 ORTHO05D002924 8.8e-07 58.2 44 59.1
MCO16G401 Micromonas commoda HOM05D002650 ORTHO05D002924 8.8e-07 58.2 42 57.1
Zm00001eb424140 Zea mays HOM05D002650 ORTHO05D002924 8.8e-07 58.2 43 53.5
Zm00001eb424180 Zea mays HOM05D002650 ORTHO05D002924 8.8e-07 58.2 43 53.5
Zm00001eb424230 Zea mays HOM05D002650 ORTHO05D002924 8.8e-07 58.2 43 53.5
Cre06.g270900 Chlamydomonas reinhardtii HOM05D002650 ORTHO05D002924 1.2e-06 57.8 43 53.5
Dinv32952 Davidia involucrata HOM05D008017 ORTHO05D009829 1.2e-06 57.8 42 57.1
Oeu022877.1 Olea europaea HOM05D008017 ORTHO05D009829 1.2e-06 57.8 43 58.1
Aqoxy3G00648 Aquilegia oxysepala HOM05D002650 ORTHO05D002924 1.5e-06 57.4 94 35.1
Lj2A1176T49 Lonicera japonica HOM05D008017 ORTHO05D009829 2.0e-06 57.0 45 64.4
PGSC0003DMG400000958 Solanum tuberosum HOM05D008017 ORTHO05D009829 2.0e-06 57.0 68 45.6
Prupe.8G243500 Prunus persica HOM05D008017 ORTHO05D009829 2.6e-06 56.6 45 48.9
CSS0036401 Camellia sinensis var. sinensis HOM05D008017 ORTHO05D009829 3.4e-06 56.2 46 56.5
Mapoly0052s0044 Marchantia polymorpha HOM05D002650 ORTHO05D002924 3.4e-06 56.2 58 44.8
RcHm_v2.0_Chr6g0291401 Rosa chinensis HOM05D008017 ORTHO05D009829 3.4e-06 56.2 46 50.0
CANSAT64G1048 Cannabis sativa HOM05D002650 ORTHO05D002924 4.4e-06 55.8 42 54.8
Solyc09g064920.3 Solanum lycopersicum HOM05D008017 ORTHO05D009829 4.4e-06 55.8 45 57.8
Cfa006117 Carpinus fangiana HOM05D008017 ORTHO05D009829 5.7e-06 55.5 46 56.5
Cc01_g19690 Coffea canephora HOM05D008017 ORTHO05D009829 5.7e-06 55.5 43 58.1
vmacro14930 Vaccinium macrocarpon HOM05D008017 ORTHO05D009829 5.7e-06 55.5 43 62.8
GSVIVG01011109001 Vitis vinifera HOM05D008017 ORTHO05D009829 5.7e-06 55.5 44 56.8
CANSAT25G3665 Cannabis sativa HOM05D008017 ORTHO05D009829 7.5e-06 55.1 42 57.1
DCAR_001980 Daucus carota HOM05D002650 ORTHO05D002924 7.5e-06 55.1 42 52.4
Glyma.19G021800 Glycine max HOM05D002650 ORTHO05D002924 7.5e-06 55.1 42 54.8
Thecc.01G282500 Theobroma cacao HOM05D008017 ORTHO05D009829 7.5e-06 55.1 44 63.6
Thecc.04G080400 Theobroma cacao HOM05D002650 ORTHO05D002924 7.5e-06 55.1 42 54.8
Zm00001eb424100 Zea mays HOM05D002650 ORTHO05D051651 7.5e-06 55.1 51 47.1
AUR62044728 Chenopodium quinoa HOM05D002650 ORTHO05D002924 9.8e-06 54.7 42 52.4
Haze_26870 Corylus avellana HOM05D002650 ORTHO05D002924 9.8e-06 54.7 60 43.3
Lj4P259T23 Lonicera japonica HOM05D002650 ORTHO05D002924 9.8e-06 54.7 42 54.8
Manes.01G090100 Manihot esculenta HOM05D002650 ORTHO05D002924 9.8e-06 54.7 42 54.8
Nn4g23144 Nelumbo nucifera HOM05D002650 ORTHO05D002924 9.8e-06 54.7 57 42.1
PSO063G6920 Papaver somniferum HOM05D002650 ORTHO05D002924 9.8e-06 54.7 42 52.4
PSO675G8623 Papaver somniferum HOM05D002650 ORTHO05D002924 9.8e-06 54.7 42 52.4
PSO832G1866 Papaver somniferum HOM05D002650 ORTHO05D002924 9.8e-06 54.7 42 52.4
Sabra17G0072900 Salix brachista HOM05D002650 ORTHO05D002924 9.8e-06 54.7 42 52.4
TPR.G21390 Trifolium pratense HOM05D002650 ORTHO05D002924 9.8e-06 54.7 42 52.4
TPR.G3004 Trifolium pratense HOM05D002650 ORTHO05D002924 9.8e-06 54.7 42 52.4


User provided reference genes

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