Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 3.4e-129 464.9 224 100.0
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 2.0e-108 396.0 244 80.7
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 4.4e-108 394.8 244 79.5
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 4.4e-108 394.8 244 79.9
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 3.7e-107 391.7 244 79.5
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 1.4e-106 389.8 244 79.1
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 1.6e-105 386.3 244 78.7
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 7.7e-105 384.0 244 78.3
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 4.2e-103 378.3 244 75.4
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 7.2e-103 377.5 244 75.4
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 2.1e-102 375.9 244 74.6
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.1e-102 375.9 244 74.6
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 2.1e-102 375.9 244 76.2
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 2.7e-102 375.6 245 75.9
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 2.3e-101 372.5 244 73.8
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 2.3e-101 372.5 245 75.9
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 3.0e-101 372.1 244 74.6
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 1.1e-98 363.6 244 73.0
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 3.1e-98 362.1 244 72.5
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 4.1e-98 361.7 244 74.2
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 5.4e-98 361.3 246 72.0
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 7.0e-98 360.9 244 72.1
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 1.6e-97 359.8 244 71.7
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 2.0e-97 359.4 244 71.7
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.0e-96 357.1 244 71.7
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 1.0e-96 357.1 246 71.5
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 2.2e-96 355.9 244 72.5
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 2.2e-96 355.9 244 70.9
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 2.9e-96 355.5 244 72.1
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 3.8e-96 355.1 244 69.7
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 3.8e-96 355.1 244 71.3
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 1.1e-95 353.6 244 70.5
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 4.2e-95 351.7 244 69.3
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 7.2e-95 350.9 244 69.7
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 9.4e-95 350.5 244 68.0
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 1.2e-94 350.1 244 70.9
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 2.7e-94 349.0 244 70.5
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 4.7e-94 348.2 246 69.9
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 6.1e-94 347.8 244 71.7
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 8.0e-94 347.4 243 70.4
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 8.0e-94 347.4 242 69.0
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 1.0e-93 347.1 242 69.8
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.4e-93 346.7 244 69.7
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 2.3e-93 345.9 244 69.3
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 2.3e-93 345.9 245 68.6
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 3.0e-93 345.5 245 69.0
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 6.8e-93 344.4 244 67.2
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 8.8e-93 344.0 244 67.6
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 1.2e-92 343.6 244 70.5
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 1.2e-92 343.6 260 65.0
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 1.5e-92 343.2 245 68.6
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 3.4e-92 342.0 244 67.2
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 5.7e-92 341.3 245 68.6
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 7.5e-92 340.9 243 68.7
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 2.8e-91 339.0 244 66.4
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 3.7e-91 338.6 242 68.6
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 3.7e-91 338.6 243 67.9
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 4.9e-91 338.2 244 66.8
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 4.9e-91 338.2 244 66.8
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 6.3e-91 337.8 244 66.8
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 8.3e-91 337.4 244 67.2
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 8.3e-91 337.4 241 66.8
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 1.4e-90 336.7 244 67.2
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 1.8e-90 336.3 242 65.7
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 2.4e-90 335.9 245 66.9
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 2.4e-90 335.9 242 65.7
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 3.1e-90 335.5 245 66.9
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 7.0e-90 334.3 245 66.5
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 9.2e-90 334.0 244 65.2
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 1.2e-89 333.6 244 66.0
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 4.5e-89 331.6 245 66.1
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 7.7e-89 330.9 275 61.1
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 1.0e-88 330.5 230 69.1
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 1.0e-88 330.5 244 65.2
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 1.3e-88 330.1 242 66.5
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 1.3e-88 330.1 285 60.4
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 8.6e-88 327.4 275 61.1
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 1.1e-87 327.0 244 63.9
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 2.5e-87 325.9 229 69.4
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 5.6e-87 324.7 296 56.4
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 1.2e-86 323.6 244 63.5
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 6.1e-86 321.2 244 63.5
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 6.1e-86 321.2 229 68.6
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 1.4e-85 320.1 247 64.8
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 8.9e-85 317.4 254 63.4
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 8.9e-85 317.4 244 61.9
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.5e-84 316.6 244 62.3
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 3.4e-84 315.5 231 66.2
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 1.3e-83 313.5 327 53.8
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 8.3e-83 310.8 214 69.6
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 1.2e-81 307.0 241 62.7
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 2.3e-80 302.8 281 54.4
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 3.3e-79 298.9 224 66.5
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 7.3e-79 297.7 210 68.1
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 6.8e-77 291.2 250 54.8
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.6e-76 289.3 205 70.2
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 4.9e-75 285.0 205 68.8
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 4.1e-74 282.0 209 66.5
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.6e-73 280.0 224 62.5
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 3.5e-73 278.9 301 51.5
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 4.6e-73 278.5 248 52.4
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 8.1e-70 267.7 200 67.5
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 1.2e-62 243.8 312 42.6
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 1.3e-56 223.8 260 45.8
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 1.3e-56 223.8 250 48.8
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 2.7e-49 199.5 238 45.4
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 3.9e-48 195.7 231 46.8
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 8.7e-48 194.5 255 40.8
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 4.0e-45 185.7 161 59.6
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.0e-44 183.3 126 73.8
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 3.8e-43 179.1 98 80.6
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 4.9e-43 178.7 340 37.1
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.6e-33 147.1 83 77.1
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 1.0e-32 144.4 122 58.2
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 9.6e-31 137.9 97 70.1
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 9.3e-26 121.3 83 73.5
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 9.3e-26 121.3 83 73.5
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.6e-22 110.5 74 75.7
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.1e-21 107.8 59 81.4
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 4.8e-14 82.4 171 36.8
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 6.9e-13 78.6 58 70.7
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 9.4e-10 68.2 38 76.3
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 1.2e-09 67.8 51 58.8
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 1.2e-09 67.8 51 58.8
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 1.2e-09 67.8 51 58.8
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 2.1e-09 67.0 37 78.4
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 2.7e-09 66.6 73 42.5
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 7.4e-07 58.5 65 44.6
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 2.2e-06 57.0 76 42.1
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 4.8e-06 55.8 73 42.5
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 4.8e-06 55.8 73 39.7
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 6.3e-06 55.5 87 35.6
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 6.3e-06 55.5 77 41.6
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 8.2e-06 55.1 43 53.5


User provided reference genes

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