Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 4.6e-94 347.8 168 100.0
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 9.6e-92 340.1 168 98.2
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 7.2e-63 244.2 168 76.2
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 7.2e-63 244.2 168 76.2
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 9.3e-63 243.8 168 76.2
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 2.7e-62 242.3 168 75.6
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 1.3e-61 240.0 168 75.0
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 2.3e-61 239.2 168 74.4
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 1.9e-60 236.1 168 73.8
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 1.9e-60 236.1 164 74.4
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 1.9e-60 236.1 164 74.4
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 2.5e-60 235.7 168 73.2
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 4.3e-60 235.0 168 73.2
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 1.6e-59 233.0 168 73.2
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 3.4e-57 225.3 168 71.4
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 1.0e-56 223.8 168 70.8
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 1.0e-56 223.8 168 70.8
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 2.2e-56 222.6 168 71.4
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 3.8e-56 221.9 168 71.4
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 3.8e-56 221.9 168 70.8
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 5.0e-56 221.5 168 70.2
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 5.0e-56 221.5 168 70.2
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 8.5e-56 220.7 168 69.6
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 1.1e-55 220.3 168 70.2
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 1.4e-55 219.9 168 70.2
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 1.4e-55 219.9 168 70.2
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.9e-55 219.5 168 69.0
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 3.2e-55 218.8 168 70.2
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 5.5e-55 218.0 183 65.6
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 1.2e-54 216.9 168 69.0
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 1.2e-54 216.9 168 69.0
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 1.2e-54 216.9 168 69.6
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.2e-54 216.9 168 69.0
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.2e-54 216.9 168 69.0
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 1.6e-54 216.5 168 68.5
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 2.1e-54 216.1 160 71.2
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 2.1e-54 216.1 167 68.9
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 2.1e-54 216.1 165 69.1
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 2.1e-54 216.1 168 67.9
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 2.7e-54 215.7 168 69.6
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 2.7e-54 215.7 165 69.1
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.7e-54 215.7 165 69.1
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.7e-54 215.7 165 69.1
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 2.7e-54 215.7 165 69.1
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 3.6e-54 215.3 162 70.4
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 3.6e-54 215.3 162 70.4
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 3.6e-54 215.3 162 69.8
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 4.6e-54 214.9 200 58.0
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 4.6e-54 214.9 168 67.3
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 4.6e-54 214.9 168 67.3
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.1e-54 214.5 165 68.5
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 6.1e-54 214.5 162 70.4
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 7.9e-54 214.2 165 70.3
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 7.9e-54 214.2 168 69.0
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.0e-53 213.8 163 68.7
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.0e-53 212.2 165 68.5
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 3.0e-53 212.2 161 70.2
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 5.1e-53 211.5 168 66.1
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 6.7e-53 211.1 161 68.9
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 6.7e-53 211.1 161 69.6
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 8.8e-53 210.7 161 69.6
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 1.1e-52 210.3 161 68.9
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.1e-52 210.3 162 68.5
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 1.5e-52 209.9 161 68.3
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 1.5e-52 209.9 168 67.3
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 2.0e-52 209.5 168 66.1
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 2.5e-52 209.1 168 65.5
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 3.3e-52 208.8 168 66.7
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 3.3e-52 208.8 161 68.9
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.3e-52 208.4 168 66.1
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 4.3e-52 208.4 168 66.1
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 5.7e-52 208.0 162 67.9
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 5.7e-52 208.0 162 67.9
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 7.4e-52 207.6 168 66.1
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 7.4e-52 207.6 168 66.1
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 7.4e-52 207.6 168 66.1
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 7.4e-52 207.6 159 68.6
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 9.7e-52 207.2 162 67.3
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 9.7e-52 207.2 162 67.9
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 9.7e-52 207.2 165 65.5
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.3e-51 206.8 162 67.3
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 1.3e-51 206.8 168 66.1
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 1.7e-51 206.5 168 66.7
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 1.7e-51 206.5 168 65.5
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 1.7e-51 206.5 165 67.3
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 1.7e-51 206.5 163 67.5
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 2.2e-51 206.1 168 66.1
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.8e-51 205.7 166 66.3
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 1.1e-50 203.8 162 66.0
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 1.1e-50 203.8 168 65.5
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 1.4e-50 203.4 168 64.9
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 5.3e-50 201.4 169 64.5
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 9.1e-50 200.7 170 64.7
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.2e-49 200.3 168 64.3
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.5e-49 199.9 188 59.6
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 2.6e-49 199.1 170 64.1
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.7e-48 196.4 160 65.0
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.1e-47 193.7 168 61.9
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 4.2e-47 191.8 168 61.9
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 1.2e-46 190.3 168 60.7
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 2.7e-46 189.1 157 64.3
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 6.1e-46 188.0 168 64.3
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.0e-44 183.0 168 58.3
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.3e-43 180.3 168 56.5
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 1.7e-43 179.9 168 60.1
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 6.3e-43 177.9 163 59.5
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 8.2e-43 177.6 168 56.0
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.7e-40 169.9 165 59.4
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 7.2e-39 164.5 166 50.6
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 2.7e-38 162.5 162 50.6
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 2.7e-38 162.5 159 58.5
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 1.4e-37 160.2 134 61.9
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 2.3e-37 159.5 86 90.7
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 4.0e-37 158.7 165 52.1
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 5.2e-37 158.3 86 89.5
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 5.2e-37 158.3 86 89.5
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 3.3e-36 155.6 176 54.5
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 7.5e-36 154.5 155 51.6
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 1.4e-34 150.2 98 79.6
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 7.0e-34 147.9 164 48.2
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 9.1e-34 147.5 152 54.6
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 5.9e-33 144.8 84 86.9
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.0e-32 144.1 84 85.7
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 6.5e-32 141.4 84 83.3
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.2e-31 137.9 93 75.3
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 3.6e-30 135.6 85 81.2
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 4.7e-30 135.2 84 79.8
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 6.1e-30 134.8 111 64.0
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.1e-30 134.8 92 73.9
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 1.8e-29 133.3 168 48.2
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.5e-28 127.9 90 73.3
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 4.8e-27 125.2 104 67.3
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.4e-26 123.6 112 56.2
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.5e-25 119.0 112 55.4
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 1.1e-23 114.0 103 57.3
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.2e-23 111.3 107 54.2
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.7e-22 108.6 123 51.2
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.8e-21 106.7 100 55.0
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.6e-20 102.8 90 58.9
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.3e-19 100.5 57 82.5
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 8.3e-19 97.8 45 97.8
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 2.0e-17 93.2 90 55.6
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 7.7e-17 91.3 44 88.6
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.8e-16 89.0 76 57.9
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 6.4e-11 71.6 35 91.4
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 1.8e-10 70.1 56 67.9
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 5.0e-08 62.0 42 71.4
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 5.0e-08 62.0 57 59.6


User provided reference genes

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