Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 2354.3 1162 100.0
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 2293.5 1173 96.8
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1784.2 1183 74.5
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1736.1 1183 72.8
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1721.4 1180 72.8
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1718.7 1187 72.3
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1714.9 1187 72.0
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1712.6 1180 72.5
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1554.7 1059 73.2
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1532.7 1055 72.5
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1451.4 1181 62.0
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1437.9 1175 61.1
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1436.8 1187 59.1
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1433.7 1185 61.1
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1410.2 1162 61.0
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1410.2 1182 58.9
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1398.3 1395 53.0
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1395.2 1186 58.9
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1394.8 1178 58.7
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1392.5 1181 59.4
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1389.4 1128 63.0
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1385.5 1175 59.0
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1382.1 1172 58.4
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1377.1 1181 59.5
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1367.1 1189 57.8
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1366.7 1183 60.2
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1345.9 1179 58.6
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1345.1 1194 57.6
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1339.7 1212 55.8
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1337.0 1181 57.2
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1332.4 1180 57.0
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1327.0 1186 58.0
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1323.9 1168 56.4
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1307.7 1171 55.4
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1298.5 1171 55.1
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1298.5 1179 56.1
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1296.2 1185 56.6
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1293.9 1185 56.5
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1293.5 1184 56.0
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1290.4 1171 54.4
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1284.2 1165 57.1
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1283.5 1185 56.4
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1266.1 1173 54.3
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1266.1 1389 50.3
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1265.4 1173 54.4
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1265.0 1172 54.4
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1264.6 1182 54.7
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1261.5 1172 54.4
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1259.6 1171 54.4
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1257.7 1179 54.3
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1256.5 1185 55.4
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1254.6 1215 53.4
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1253.0 1179 54.2
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1246.1 1221 53.2
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1245.7 1172 53.4
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1242.3 1171 52.9
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1235.7 1177 54.2
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1233.0 1162 53.8
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1233.0 1176 53.2
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1223.0 1171 52.9
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1222.6 1176 52.6
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1222.2 1171 53.0
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1220.7 1157 53.7
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1218.0 1165 52.7
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1213.7 1177 52.8
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1212.2 1161 54.6
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1209.1 1181 52.7
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1200.7 1169 52.9
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1194.9 1114 54.8
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1190.6 1037 58.0
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1181.4 1165 52.3
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1180.2 1173 52.2
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1179.1 1168 52.4
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1167.1 1169 52.3
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1144.4 1182 49.9
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1140.2 1174 50.9
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1139.8 1171 49.5
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1127.9 1172 50.1
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 0.0e+00 1076.6 1117 50.3
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 2.1e-307 1059.3 1169 47.8
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 5.6e-300 1034.6 1186 46.0
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 5.3e-298 1028.1 1217 45.9
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 1.4e-295 1020.0 1118 48.7
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 9.6e-292 1007.3 1146 47.7
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 1.8e-285 986.5 1184 44.8
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 2.1e-278 963.0 1113 48.2
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.5e-273 946.8 752 63.8
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 7.0e-266 921.4 834 57.9
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 1.7e-232 810.4 799 53.4
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 4.9e-227 792.3 1090 42.5
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 7.8e-217 758.4 716 53.9
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 4.8e-198 696.0 762 48.8
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 1.3e-195 688.0 1210 35.5
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 9.3e-170 602.1 1190 34.1
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 3.4e-164 583.6 582 51.2
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 2.2e-158 564.3 614 50.7
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 2.1e-153 547.7 441 63.7
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 4.4e-135 486.9 1115 31.8
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 6.3e-126 456.4 393 56.7
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 7.0e-125 453.0 466 49.6
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 5.2e-120 436.8 791 35.7
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 2.9e-110 404.4 422 50.5
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 3.9e-107 394.0 219 91.8
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 3.3e-106 391.0 522 41.4
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.0e-87 328.6 403 41.7
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 3.8e-86 324.3 302 54.0
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 2.7e-84 318.2 213 70.4
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 3.2e-69 268.1 182 67.0
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 3.4e-63 248.1 203 61.1
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 2.7e-60 238.4 174 69.5
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.6e-52 212.6 270 41.5
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-48 199.5 1114 24.1
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 1.5e-29 136.3 157 45.9
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 4.2e-29 134.8 123 51.2
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.2e-28 133.3 322 30.1
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 2.8e-25 122.1 61 90.2
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 6.5e-22 110.9 53 94.3
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 1.1e-21 110.2 57 96.5
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 2.3e-19 102.4 409 25.2
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 8.8e-19 100.5 48 100.0
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 9.8e-18 97.1 462 23.6
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 7.0e-16 90.9 107 48.6
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 1.5e-13 83.2 71 54.9
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 9.5e-13 80.5 60 56.7
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 3.6e-12 78.6 54 70.4
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 8.9e-11 73.9 116 42.2
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 1.7e-09 69.7 46 65.2
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 3.7e-09 68.6 46 65.2


User provided reference genes

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