Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SX0HJ3 Arachis hypogaea HOM05D022377 ORTHO05D004116 1.5e-106 389.8 232 100.0
arahy.Tifrunner.gnm1.ann1.RGD672 Arachis hypogaea HOM05D022377 ORTHO05D004116 1.6e-92 343.2 233 84.5
arahy.Tifrunner.gnm1.ann1.GIH91M Arachis hypogaea HOM05D022377 ORTHO05D004116 3.9e-67 258.8 197 84.8
arahy.Tifrunner.gnm1.ann1.CX8AWV Arachis hypogaea HOM05D022377 ORTHO05D004116 1.2e-63 247.3 190 83.2
arahy.Tifrunner.gnm1.ann1.ACR8J8 Arachis hypogaea HOM05D022377 ORTHO05D004116 3.2e-45 186.0 101 89.1
arahy.Tifrunner.gnm1.ann1.FLAY3S Arachis hypogaea HOM05D003719 ORTHO05D004116 1.1e-29 134.4 97 69.1
Lj3g0017682 Lotus japonicus HOM05D003719 ORTHO05D004116 1.8e-11 73.9 76 46.1
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 8.8e-11 71.6 72 45.8
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 2.6e-10 70.1 78 38.5
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 2.6e-10 70.1 77 44.2
Glyma.03G094200 Glycine max HOM05D003719 ORTHO05D004116 3.3e-10 69.7 77 41.6
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 4.4e-10 69.3 61 41.0
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 4.4e-10 69.3 61 41.0
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 4.4e-10 69.3 61 41.0
VMungo0331G0617 Vigna mungo HOM05D003719 ORTHO05D004116 4.4e-10 69.3 77 42.9
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 5.7e-10 68.9 77 41.6
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 7.4e-10 68.6 86 34.9
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 9.7e-10 68.2 61 39.3
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 9.7e-10 68.2 61 39.3
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 9.7e-10 68.2 86 34.9
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 1.3e-09 67.8 85 35.3
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 1.3e-09 67.8 89 36.0
BcaB01g04909 Brassica carinata HOM05D003719 ORTHO05D004116 1.7e-09 67.4 60 43.3
FvH4_7g08280 Fragaria vesca HOM05D003719 ORTHO05D004116 1.7e-09 67.4 83 34.9
PSO017G6528 Papaver somniferum HOM05D003719 ORTHO05D004116 1.7e-09 67.4 87 35.6
PSO170G0628 Papaver somniferum HOM05D003719 ORTHO05D004116 1.7e-09 67.4 87 35.6
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 2.2e-09 67.0 75 34.7
AL6G28780 Arabidopsis lyrata HOM05D003719 ORTHO05D004116 2.8e-09 66.6 61 41.0
AT5G17690 Arabidopsis thaliana HOM05D003719 ORTHO05D004116 2.8e-09 66.6 61 41.0
HanXRQChr04g0117671 Helianthus annuus HOM05D003719 ORTHO05D004116 2.8e-09 66.6 83 41.0
Phvul.009G117500 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 2.8e-09 66.6 78 38.5
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 2.8e-09 66.6 79 35.4
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 3.7e-09 66.2 61 39.3
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 3.7e-09 66.2 76 35.5
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 3.7e-09 66.2 61 39.3
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 3.7e-09 66.2 61 39.3
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 3.7e-09 66.2 76 35.5
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 3.7e-09 66.2 84 33.3
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 3.7e-09 66.2 84 33.3
Glyma.03G111600 Glycine max HOM05D003719 ORTHO05D004116 3.7e-09 66.2 69 39.1
PSO017G0756 Papaver somniferum HOM05D003719 ORTHO05D004116 3.7e-09 66.2 55 45.5
Hund17170 Selenicereus undatus HOM05D003719 ORTHO05D000105 3.7e-09 66.2 72 43.1
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 4.8e-09 65.9 82 35.4
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 4.8e-09 65.9 61 41.0
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 4.8e-09 65.9 84 33.3
Solyc10g024470.3 Solanum lycopersicum HOM05D003719 ORTHO05D004116 4.8e-09 65.9 97 35.1
Sopen10g009690 Solanum pennellii HOM05D003719 ORTHO05D004116 4.8e-09 65.9 97 35.1
arahy.Tifrunner.gnm1.ann1.U92JU2 Arachis hypogaea HOM05D003719 ORTHO05D004116 6.3e-09 65.5 82 35.4
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 6.3e-09 65.5 80 41.2
Haze_15777 Corylus avellana HOM05D003719 ORTHO05D004116 6.3e-09 65.5 79 36.7
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 6.3e-09 65.5 76 39.5
Lalb_Chr23g0264911 Lupinus albus HOM05D003719 ORTHO05D004116 6.3e-09 65.5 70 41.4
THA.LOC104802889 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 6.3e-09 65.5 62 38.7
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 6.3e-09 65.5 64 42.2
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 6.3e-09 65.5 94 31.9
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 8.2e-09 65.1 61 37.7
Carub.0006s1593 Capsella rubella HOM05D003719 ORTHO05D004116 8.2e-09 65.1 61 37.7
Migut.O00699 Erythranthe guttata HOM05D003719 ORTHO05D004116 1.1e-08 64.7 80 36.2
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 1.1e-08 64.7 96 32.3
Os10g0324900 Oryza sativa ssp. japonica HOM05D003719 ORTHO05D004116 1.1e-08 64.7 84 39.3
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 1.1e-08 64.7 77 37.7
Aa31LG11G11940 Aethionema arabicum HOM05D003719 ORTHO05D004116 1.4e-08 64.3 62 38.7
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 1.4e-08 64.3 80 40.0
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 1.4e-08 64.3 60 41.7
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 1.4e-08 64.3 84 33.3
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 1.4e-08 64.3 84 33.3
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 1.4e-08 64.3 82 35.4
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 1.8e-08 63.9 78 39.7
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 1.8e-08 63.9 80 35.0
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 1.8e-08 63.9 84 34.5
Sabra13G0061200 Salix brachista HOM05D003719 ORTHO05D004116 1.8e-08 63.9 75 36.0
VMungo1309G0350 Vigna mungo HOM05D003719 ORTHO05D004116 1.8e-08 63.9 84 33.3
BcaB01g05152 Brassica carinata HOM05D003719 ORTHO05D004116 2.4e-08 63.5 53 45.3
A03p08460 Brassica napus HOM05D003719 ORTHO05D004116 2.4e-08 63.5 53 45.3
BolC3t13474H Brassica oleracea HOM05D003719 ORTHO05D004116 2.4e-08 63.5 53 45.3
BraA03t10169Z Brassica rapa HOM05D003719 ORTHO05D004116 2.4e-08 63.5 53 45.3
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 2.4e-08 63.5 59 39.0
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 2.4e-08 63.5 61 37.7
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 3.1e-08 63.2 67 37.3
BraA09t37591Z Brassica rapa HOM05D003719 ORTHO05D004116 3.1e-08 63.2 61 36.1
BraA09t38097Z Brassica rapa HOM05D003719 ORTHO05D004116 3.1e-08 63.2 61 36.1
Nitab4.5_0025236g0010 Nicotiana tabacum HOM05D003719 ORTHO05D004116 3.1e-08 63.2 76 35.5
PSO017G2979 Papaver somniferum HOM05D033783 ORTHO05D004116 3.1e-08 63.2 62 45.2
PSO170G3936 Papaver somniferum HOM05D033783 ORTHO05D004116 3.1e-08 63.2 62 45.2
Sabra19G0054700 Salix brachista HOM05D003719 ORTHO05D004116 3.1e-08 63.2 78 34.6
HPP92_020485 Vanilla planifolia HOM05D003719 ORTHO05D004116 3.1e-08 63.2 65 38.5
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 4.1e-08 62.8 62 35.5
HanXRQChr04g0117621 Helianthus annuus HOM05D003719 ORTHO05D004116 4.1e-08 62.8 54 44.4
Lalb_Chr12g0210141 Lupinus albus HOM05D003719 ORTHO05D004116 4.1e-08 62.8 63 41.3
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 4.1e-08 62.8 74 36.5
Sed0017190 Sechium edule HOM05D003719 ORTHO05D004116 4.1e-08 62.8 87 32.2
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 4.1e-08 62.8 90 32.2
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 4.1e-08 62.8 57 40.4
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 4.1e-08 62.8 84 31.0
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 4.1e-08 62.8 78 33.3
ClCG05G002450 Citrullus lanatus HOM05D003719 ORTHO05D004116 5.3e-08 62.4 62 37.1
Dinv43515 Davidia involucrata HOM05D003719 ORTHO05D004116 5.3e-08 62.4 80 33.8
ECA236G3956 Erigeron canadensis HOM05D001257 ORTHO05D005285 5.3e-08 62.4 54 44.4
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 7.0e-08 62.0 65 36.9
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 7.0e-08 62.0 71 36.6
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 7.0e-08 62.0 84 32.1
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 7.0e-08 62.0 84 32.1
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 7.0e-08 62.0 84 32.1
Lalb_Chr13g0290921 Lupinus albus HOM05D003719 ORTHO05D004116 7.0e-08 62.0 83 33.7
unitig_0.g1580 Utricularia gibba HOM05D003719 ORTHO05D004116 7.0e-08 62.0 51 45.1
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 9.1e-08 61.6 76 35.5
ATR0568G049 Amborella trichopoda HOM05D003719 ORTHO05D004116 9.1e-08 61.6 70 35.7
Duzib177G0203 Durio zibethinus HOM05D003719 ORTHO05D004116 9.1e-08 61.6 84 32.1
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 9.1e-08 61.6 71 35.2
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 9.1e-08 61.6 85 34.1
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 1.2e-07 61.2 83 32.5
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 1.2e-07 61.2 62 37.1
DCAR_025000 Daucus carota HOM05D003719 ORTHO05D004116 1.2e-07 61.2 78 37.2
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 1.2e-07 61.2 70 34.3
Nn7g37398 Nelumbo nucifera HOM05D003719 ORTHO05D004116 1.2e-07 61.2 51 43.1
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 1.2e-07 61.2 67 37.3
Cpa.g.sc73.30 Carica papaya HOM05D003719 ORTHO05D004116 1.5e-07 60.8 82 32.9
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 1.5e-07 60.8 77 32.5
Lalb_Chr07g0194591 Lupinus albus HOM05D003719 ORTHO05D004116 1.5e-07 60.8 71 38.0
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 1.5e-07 60.8 75 37.3
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 2.0e-07 60.5 54 40.7
DCAR_015727 Daucus carota HOM05D003719 ORTHO05D004116 2.0e-07 60.5 91 34.1
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 2.0e-07 60.5 74 36.5
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 2.6e-07 60.1 71 31.0
Oeu034882.1 Olea europaea HOM05D003719 ORTHO05D004116 2.6e-07 60.1 77 33.8
Lalb_Chr10g0091841 Lupinus albus HOM05D003719 ORTHO05D004116 3.4e-07 59.7 54 42.6
SHI54853 Sapria himalayana HOM05D003719 ORTHO05D004116 3.4e-07 59.7 78 34.6
PGSC0003DMG400031112 Solanum tuberosum HOM05D003719 ORTHO05D004116 3.4e-07 59.7 73 31.5
DCAR_029570 Daucus carota HOM05D003719 ORTHO05D004116 4.5e-07 59.3 84 36.9
Psat4g207560 Pisum sativum HOM05D003719 ORTHO05D004116 4.5e-07 59.3 89 33.7
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 5.9e-07 58.9 59 37.3
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 5.9e-07 58.9 59 35.6
Mapoly0010s0167 Marchantia polymorpha HOM05D003719 ORTHO05D004116 5.9e-07 58.9 78 38.5
Mapoly0024s0010 Marchantia polymorpha HOM05D003719 ORTHO05D004116 5.9e-07 58.9 77 35.1
PGSC0003DMG400031514 Solanum tuberosum HOM05D003719 ORTHO05D004116 5.9e-07 58.9 55 40.0
Lalb_Chr13g0290971 Lupinus albus HOM05D003719 ORTHO05D004116 7.7e-07 58.5 85 36.5
Lj9A617T60 Lonicera japonica HOM05D003719 ORTHO05D004116 1.0e-06 58.2 87 32.2
Solyc01g081500.4 Solanum lycopersicum HOM05D003719 ORTHO05D004116 1.0e-06 58.2 81 33.3
Sopen01g033060 Solanum pennellii HOM05D003719 ORTHO05D004116 1.0e-06 58.2 81 33.3
Ca_23168_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 1.3e-06 57.8 84 36.9
SEGI_28532 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 1.3e-06 57.8 49 46.9
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 1.7e-06 57.4 80 35.0
PSO732G0548 Papaver somniferum HOM05D003719 ORTHO05D004116 1.7e-06 57.4 86 34.9
arahy.Tifrunner.gnm1.ann1.R86K61 Arachis hypogaea HOM05D046876 ORTHO05D004116 2.2e-06 57.0 55 49.1
Oeu045633.2 Olea europaea HOM05D003719 ORTHO05D004116 2.2e-06 57.0 73 34.2
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 2.9e-06 56.6 76 32.9
Mapoly0009s0028 Marchantia polymorpha HOM05D003719 ORTHO05D004116 2.9e-06 56.6 62 35.5
PSO732G0471 Papaver somniferum HOM05D003719 ORTHO05D004116 2.9e-06 56.6 76 35.5
PSO732G0498 Papaver somniferum HOM05D003719 ORTHO05D004116 2.9e-06 56.6 76 35.5
Oeu024948.1 Olea europaea HOM05D003719 ORTHO05D004116 3.8e-06 56.2 73 34.2
PSO675G5773 Papaver somniferum HOM05D003719 ORTHO05D004116 3.8e-06 56.2 86 29.1
Pp3c9_6410 Physcomitrium patens HOM05D003719 ORTHO05D004116 5.0e-06 55.8 55 40.0
Oeu032776.1 Olea europaea HOM05D003719 ORTHO05D004116 6.5e-06 55.5 63 34.9


User provided reference genes

Program Settings