Gene: TPR.G38555

General Information

Structural Information

  • Species Trifolium pratense
  • Gene Identifier TPR.G38555
  • Transcript Identifier TPR.T39856
  • Gene Type Coding gene
  • Location Tp57577_TGAC_v2_LG7 : 2557672-2573562 : negative

Gene Family Information

  • ID HOM05D001257
  • #Genes/#Species 497/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Tp57577_TGAC_v2_mRNA39856.v2
  • id Tp57577_TGAC_v2_gene38555.v2
  • pacid 35956296
  • uniprot A0A2K3PE61

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006325
IEA
GOA Databasechromatin organization
GO:0006342
IEA
GOA Databasechromatin silencing
GO:0071482
ISO
PLAZA Integrative Orthologycellular response to light stimulus AT1G08540
GO:2001141
ISO
PLAZA Integrative Orthologyregulation of RNA biosynthetic process AT1G08540
GO:0006399
ISO
PLAZA Integrative OrthologytRNA metabolic process AT1G08540
GO:0009637
ISO
PLAZA Integrative Orthologyresponse to blue light AT1G08540
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT1G08540
GO:0010114
ISO
PLAZA Integrative Orthologyresponse to red light AT1G08540

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0016987
ISO
PLAZA Integrative Orthologysigma factor activity AT1G08540

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G08540

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000943 RNA polymerase sigma-70
IPR008251 Chromo shadow domain
IPR023780 Chromo domain
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR007630 RNA polymerase sigma-70 region 4
IPR007627 RNA polymerase sigma-70 region 2
IPR016197 Chromo-like domain superfamily
IPR007624 RNA polymerase sigma-70 region 3
IPR000953 Chromo/chromo shadow domain
IPR014284 RNA polymerase sigma-70 like domain
IPR013325 RNA polymerase sigma factor, region 2
IPR013324 RNA polymerase sigma factor, region 3/4-like
Mapman id Description
12.3.6.1.4 Chromatin organisation.post-translational histone modification.PRC1 bifunctional histone ubiquitination and methylation reader complex.core components.modification reader component LHP1
15.6.2.1 RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma)