Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SRPF4R Arachis hypogaea HOM05D002009 ORTHO05D031586 8.4e-86 320.5 180 100.0
arahy.Tifrunner.gnm1.ann1.7D624Q Arachis hypogaea HOM05D002009 ORTHO05D005728 2.7e-31 139.4 70 94.3
arahy.Tifrunner.gnm1.ann1.BG9WT0 Arachis hypogaea HOM05D002009 ORTHO05D005728 2.7e-31 139.4 70 94.3
arahy.Tifrunner.gnm1.ann1.SAM4NP Arachis hypogaea HOM05D002009 ORTHO05D031586 7.7e-31 137.9 70 94.3
Cfa002919 Carpinus fangiana HOM05D002009 ORTHO05D005728 1.3e-30 137.1 70 92.9
Manes.12G077400 Manihot esculenta HOM05D002009 ORTHO05D005728 1.7e-30 136.7 70 91.4
Cpa.g.sc42.182 Carica papaya HOM05D002009 ORTHO05D005728 2.3e-30 136.3 70 92.9
Lalb_Chr23g0272641 Lupinus albus HOM05D002009 ORTHO05D005728 2.3e-30 136.3 70 91.4
Haze_25289 Corylus avellana HOM05D002009 ORTHO05D005728 2.9e-30 136.0 70 90.0
Glyma.06G155300 Glycine max HOM05D002009 ORTHO05D005728 2.9e-30 136.0 70 90.0
Oeu058301.1 Olea europaea HOM05D002009 ORTHO05D005728 2.9e-30 136.0 70 90.0
CSS0020069 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D005728 3.8e-30 135.6 70 91.4
MD00G1053300 Malus domestica HOM05D002009 ORTHO05D005728 3.8e-30 135.6 70 90.0
Dinv34360 Davidia involucrata HOM05D002009 ORTHO05D005728 5.0e-30 135.2 70 91.4
Duzib268G1329 Durio zibethinus HOM05D002009 ORTHO05D005728 5.0e-30 135.2 70 90.0
Rhsim10G0131800 Rhododendron simsii HOM05D002009 ORTHO05D005728 5.0e-30 135.2 70 90.0
QL10p042354 Quercus lobata HOM05D002009 ORTHO05D005728 6.5e-30 134.8 70 90.0
CAN.G128.115 Capsicum annuum HOM05D002009 ORTHO05D005728 8.6e-30 134.4 70 90.0
MBI03_g39989_MAGBIO Magnolia biondii HOM05D002009 ORTHO05D005728 1.1e-29 134.0 70 90.0
Potri.005G065800 Populus trichocarpa HOM05D002009 ORTHO05D005728 1.1e-29 134.0 70 88.6
TAR376G0128 Trochodendron aralioides HOM05D002009 ORTHO05D005728 1.1e-29 134.0 70 90.0
Aqoxy5G02298 Aquilegia oxysepala HOM05D002009 ORTHO05D005728 1.5e-29 133.7 70 90.0
Glyma.04G210700 Glycine max HOM05D002009 ORTHO05D005728 1.5e-29 133.7 70 88.6
Lj1g0002975 Lotus japonicus HOM05D002009 ORTHO05D005728 1.5e-29 133.7 70 88.6
Actinidia06606 Actinidia chinensis HOM05D002009 ORTHO05D005728 1.9e-29 133.3 70 90.0
COL.COLO4_09630 Corchorus olitorius HOM05D002009 ORTHO05D005728 1.9e-29 133.3 70 88.6
Eucgr.I00173 Eucalyptus grandis HOM05D002009 ORTHO05D005728 1.9e-29 133.3 70 88.6
Lj2C610T1 Lonicera japonica HOM05D002009 ORTHO05D005728 1.9e-29 133.3 70 88.6
TPR.G28192 Trifolium pratense HOM05D002009 ORTHO05D005728 1.9e-29 133.3 70 88.6
DCAR_001198 Daucus carota HOM05D002009 ORTHO05D005728 2.5e-29 132.9 70 88.6
Thecc.07G044100 Theobroma cacao HOM05D002009 ORTHO05D005728 2.5e-29 132.9 70 88.6
CiPaw.03G119300 Carya illinoinensis HOM05D002009 ORTHO05D005728 3.2e-29 132.5 70 90.0
Sabra05G0054400 Salix brachista HOM05D002009 ORTHO05D005728 3.2e-29 132.5 70 88.6
A06p30580 Brassica napus HOM05D002009 ORTHO05D005728 4.2e-29 132.1 70 87.1
C03p62380 Brassica napus HOM05D002009 ORTHO05D005728 4.2e-29 132.1 70 87.1
BolC3t18498H Brassica oleracea HOM05D002009 ORTHO05D005728 4.2e-29 132.1 70 87.1
BraA06t26010Z Brassica rapa HOM05D002009 ORTHO05D005728 4.2e-29 132.1 70 87.1
AUR62000499 Chenopodium quinoa HOM05D002009 ORTHO05D005728 4.2e-29 132.1 70 87.1
AUR62006845 Chenopodium quinoa HOM05D002009 ORTHO05D005728 4.2e-29 132.1 70 87.1
Ciclev10000086m.g Citrus clementina HOM05D002009 ORTHO05D005728 4.2e-29 132.1 70 90.0
Migut.H00864 Erythranthe guttata HOM05D002009 ORTHO05D005728 4.2e-29 132.1 70 88.6
Solyc10g081250.3 Solanum lycopersicum HOM05D002009 ORTHO05D005728 4.2e-29 132.1 70 88.6
Sopen10g031750 Solanum pennellii HOM05D002009 ORTHO05D005728 4.2e-29 132.1 70 88.6
Ah.06g190900 Amaranthus hybridus HOM05D002009 ORTHO05D005728 5.5e-29 131.7 70 87.1
HanXRQChr12g0380541 Helianthus annuus HOM05D002009 ORTHO05D005728 5.5e-29 131.7 70 88.6
Phvul.009G155200 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 5.5e-29 131.7 70 87.1
GSVIVG01026455001 Vitis vinifera HOM05D002009 ORTHO05D005728 7.2e-29 131.3 70 88.6
Aa31LG3G3040 Aethionema arabicum HOM05D002009 ORTHO05D005728 9.5e-29 131.0 70 88.6
Ca_16976_v3 Cicer arietinum L. HOM05D002009 ORTHO05D005728 9.5e-29 131.0 70 85.7
FvH4_1g24660 Fragaria vesca HOM05D002009 ORTHO05D005728 9.5e-29 131.0 70 88.6
FAN19G2450 Fragaria x ananassa HOM05D002009 ORTHO05D005728 9.5e-29 131.0 70 88.6
FAN23G2639 Fragaria x ananassa HOM05D002009 ORTHO05D005728 9.5e-29 131.0 70 88.6
FAN26G3211 Fragaria x ananassa HOM05D002009 ORTHO05D005728 9.5e-29 131.0 70 88.6
FAN28G0184 Fragaria x ananassa HOM05D002009 ORTHO05D005728 9.5e-29 131.0 70 88.6
Gohir.A13G139100 Gossypium hirsutum HOM05D002009 ORTHO05D005728 9.5e-29 131.0 70 87.1
Gorai.013G160900 Gossypium raimondii HOM05D002009 ORTHO05D005728 9.5e-29 131.0 70 87.1
TWI31G0245 Tripterygium wilfordii HOM05D002009 ORTHO05D005728 9.5e-29 131.0 70 87.1
EL10Ac4g09604 Beta vulgaris HOM05D002009 ORTHO05D005728 1.2e-28 130.6 70 85.7
CARHR277870 Cardamine hirsuta HOM05D002009 ORTHO05D005728 1.2e-28 130.6 70 87.1
Os11g0186400 Oryza sativa ssp. japonica HOM05D002009 ORTHO05D005728 1.2e-28 130.6 70 87.1
Prupe.4G273600 Prunus persica HOM05D002009 ORTHO05D005728 1.2e-28 130.6 70 87.1
Sed0004291 Sechium edule HOM05D002009 ORTHO05D005728 1.2e-28 130.6 70 87.1
CANSAT01G2904 Cannabis sativa HOM05D002009 ORTHO05D005728 1.6e-28 130.2 70 85.7
ECA233G2868 Erigeron canadensis HOM05D002009 ORTHO05D005728 1.6e-28 130.2 70 88.6
PSO017G4864 Papaver somniferum HOM05D002009 ORTHO05D005728 1.6e-28 130.2 70 88.6
Psat5g060760 Pisum sativum HOM05D002009 ORTHO05D005728 1.6e-28 130.2 70 87.1
AT5G63960 Arabidopsis thaliana HOM05D002009 ORTHO05D005728 2.1e-28 129.8 70 87.1
MELO3C024596.2 Cucumis melo HOM05D002009 ORTHO05D005728 2.1e-28 129.8 70 87.1
Lsat_1_v5_gn_5_68921 Lactuca sativa HOM05D002009 ORTHO05D005728 2.1e-28 129.8 70 87.1
CDE06G1389 Ceratophyllum demersum HOM05D002009 ORTHO05D005728 2.8e-28 129.4 70 84.3
Phvul.005G019000 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 2.8e-28 129.4 70 85.7
Hund07251 Selenicereus undatus HOM05D002009 ORTHO05D005728 2.8e-28 129.4 70 85.7
Sc16g0009480 Simmondsia chinensis HOM05D002009 ORTHO05D005728 2.8e-28 129.4 70 87.1
Aa31LG1G17940 Aethionema arabicum HOM05D002009 ORTHO05D005728 3.6e-28 129.0 70 84.3
AL8G41220 Arabidopsis lyrata HOM05D002009 ORTHO05D005728 3.6e-28 129.0 70 85.7
Gohir.D13G143900 Gossypium hirsutum HOM05D002009 ORTHO05D005728 3.6e-28 129.0 70 85.7
Sp2g27020 Schrenkiella parvula HOM05D002009 ORTHO05D005728 3.6e-28 129.0 70 85.7
THA.LOC104818425 Tarenaya hassleriana HOM05D002009 ORTHO05D005728 4.7e-28 128.6 70 85.7
VMungo1309G0642 Vigna mungo HOM05D002009 ORTHO05D005728 4.7e-28 128.6 70 85.7
MSTRG.23471 Avicennia marina HOM05D002009 ORTHO05D005728 6.1e-28 128.3 70 84.3
Thhalv10003565m.g Eutrema salsugineum HOM05D002009 ORTHO05D005728 6.1e-28 128.3 70 84.3
PSO170G4442 Papaver somniferum HOM05D002009 ORTHO05D005728 6.1e-28 128.3 70 87.1
Medtr3g096525 Medicago truncatula HOM05D002009 ORTHO05D005728 8.0e-28 127.9 70 85.7
Nn033s41620 Nelumbo nucifera HOM05D002009 ORTHO05D005728 8.0e-28 127.9 70 85.7
Nn5g28479 Nelumbo nucifera HOM05D002009 ORTHO05D005728 8.0e-28 127.9 70 85.7
SGA_v2.0_scaffold273G46462 Striga asiatica HOM05D002009 ORTHO05D005728 8.0e-28 127.9 70 85.7
ClCG01G015100 Citrullus lanatus HOM05D002009 ORTHO05D005728 1.0e-27 127.5 70 85.7
Peaxi162Scf00153g00816 Petunia axillaris HOM05D002009 ORTHO05D005728 1.0e-27 127.5 70 85.7
RcHm_v2.0_Chr2g0122111 Rosa chinensis HOM05D002009 ORTHO05D005728 1.4e-27 127.1 70 85.7
CsaV3_6G041210 Cucumis sativus L. HOM05D002009 ORTHO05D005728 1.8e-27 126.7 70 85.7
Carub.0008s2474 Capsella rubella HOM05D002009 ORTHO05D005728 2.3e-27 126.3 70 85.7
Migut.E01506 Erythranthe guttata HOM05D002009 ORTHO05D005728 2.3e-27 126.3 70 84.3
Atru.chr4.962 Acer truncatum HOM05D002009 ORTHO05D005728 3.0e-27 125.9 70 85.7
Cc07_g18900 Coffea canephora HOM05D002009 ORTHO05D005728 3.0e-27 125.9 70 82.9
Zm00001eb201340 Zea mays HOM05D002009 ORTHO05D005728 5.2e-27 125.2 70 84.3
SMO232G0005 Selaginella moellendorffii HOM05D002009 ORTHO05D005728 1.7e-25 120.2 70 78.6
Migut.B00967 Erythranthe guttata HOM05D002009 ORTHO05D005728 2.8e-25 119.4 70 80.0
Nitab4.5_0003690g0060 Nicotiana tabacum HOM05D002009 ORTHO05D005728 3.7e-25 119.0 70 81.4
Nitab4.5_0000062g0530 Nicotiana tabacum HOM05D002009 ORTHO05D005728 4.9e-25 118.6 70 81.4
ATR0584G016 Amborella trichopoda HOM05D002009 ORTHO05D005728 6.3e-25 118.2 70 77.1
vmacro12782 Vaccinium macrocarpon HOM05D002009 ORTHO05D005728 5.4e-24 115.2 116 55.2
AagrBONN_evm.TU.Sc2ySwM_344.4377 Anthoceros agrestis HOM05D002009 ORTHO05D005728 7.0e-24 114.8 70 77.1
arahy.Tifrunner.gnm1.ann1.9F49MR Arachis hypogaea HOM05D002009 ORTHO05D004937 2.7e-23 112.8 57 93.0
HPP92_005659 Vanilla planifolia HOM05D002009 ORTHO05D005728 4.5e-23 112.1 70 72.9
Pp3c27_3350 Physcomitrium patens HOM05D002009 ORTHO05D005728 2.9e-22 109.4 70 71.4
Pp3c6_19160 Physcomitrium patens HOM05D002009 ORTHO05D005728 1.1e-21 107.5 70 71.4
Mapoly0087s0021 Marchantia polymorpha HOM05D002009 ORTHO05D005728 1.9e-21 106.7 70 70.0
MBI10_g26754_MAGBIO Magnolia biondii HOM05D002009 ORTHO05D031586 2.5e-21 106.3 66 81.8
SHI11495 Sapria himalayana HOM05D002009 ORTHO05D005728 5.6e-21 105.1 63 77.8
MD07G1029900 Malus domestica HOM05D002009 ORTHO05D005728 7.3e-21 104.8 84 64.3
CBR_g38906 Chara braunii HOM05D002009 ORTHO05D005728 2.3e-19 99.8 70 70.0
PRCOL_00002177 Prasinoderma coloniale HOM05D002009 ORTHO05D005728 2.9e-17 92.8 70 62.9
MCO05G447 Micromonas commoda HOM05D002009 ORTHO05D005728 2.0e-15 86.7 70 62.9
arahy.Tifrunner.gnm1.ann1.B50YZX Arachis hypogaea HOM05D001120 ORTHO05D002943 4.6e-15 85.5 44 95.5
Cre01.g015250 Chlamydomonas reinhardtii HOM05D002009 ORTHO05D005728 2.5e-13 79.7 71 52.1
Cfa025827 Carpinus fangiana HOM05D002009 ORTHO05D005728 4.4e-10 68.9 76 44.7
Haze_26645 Corylus avellana HOM05D002009 ORTHO05D005728 4.9e-09 65.5 71 47.9
Pp3c17_18800 Physcomitrium patens HOM05D002009 ORTHO05D005728 4.9e-09 65.5 63 47.6
Cre03.g198750 Chlamydomonas reinhardtii HOM05D002009 ORTHO05D005728 7.0e-08 61.6 63 47.6
arahy.Tifrunner.gnm1.ann1.51RH0H Arachis hypogaea HOM05D005939 ORTHO05D007412 1.6e-07 60.5 30 96.7
Oeu002661.1 Olea europaea HOM05D002009 ORTHO05D006831 4.6e-07 58.9 83 36.1
Medtr7g113380 Medicago truncatula HOM05D002009 ORTHO05D006831 6.0e-07 58.5 83 34.9
TPR.G33207 Trifolium pratense HOM05D002009 ORTHO05D006831 1.0e-06 57.8 83 36.1
SHI18128 Sapria himalayana HOM05D002009 ORTHO05D006831 1.3e-06 57.4 81 35.8
Psat0s2197g0160 Pisum sativum HOM05D002009 ORTHO05D006831 2.3e-06 56.6 83 34.9
Sabra13G0024400 Salix brachista HOM05D002009 ORTHO05D006831 2.3e-06 56.6 83 34.9
Dinv40301 Davidia involucrata HOM05D002009 ORTHO05D006831 3.0e-06 56.2 83 37.3
Lsat_1_v5_gn_9_86800 Lactuca sativa HOM05D002009 ORTHO05D006831 3.0e-06 56.2 83 37.3
Lalb_Chr18g0045671 Lupinus albus HOM05D002009 ORTHO05D006831 3.9e-06 55.8 84 34.5
Peaxi162Scf00037g00637 Petunia axillaris HOM05D002009 ORTHO05D006831 3.9e-06 55.8 83 36.1
Potri.013G022200 Populus trichocarpa HOM05D002009 ORTHO05D006831 3.9e-06 55.8 83 34.9
Ca_05812_v3 Cicer arietinum L. HOM05D002009 ORTHO05D006831 5.0e-06 55.5 83 34.9
MELO3C004237.2 Cucumis melo HOM05D002009 ORTHO05D006831 5.0e-06 55.5 83 38.6
DCAR_001814 Daucus carota HOM05D002009 ORTHO05D006831 5.0e-06 55.5 83 34.9
Hma1.2p1_1077F.1_g254700 Hydrangea macrophylla HOM05D002009 ORTHO05D006831 5.0e-06 55.5 83 33.7
Atru.chr2.372 Acer truncatum HOM05D002009 ORTHO05D006831 6.6e-06 55.1 83 36.1
Glyma.03G237200 Glycine max HOM05D002009 ORTHO05D006831 8.6e-06 54.7 83 34.9
Manes.09G167800 Manihot esculenta HOM05D002009 ORTHO05D006831 8.6e-06 54.7 86 33.7
Nn3g21358 Nelumbo nucifera HOM05D002009 ORTHO05D006831 8.6e-06 54.7 83 34.9
SGA_v2.0_scaffold46G17397 Striga asiatica HOM05D004344 ORTHO05D006026 8.6e-06 54.7 78 41.0
TAR633G0909 Trochodendron aralioides HOM05D002009 ORTHO05D006831 8.6e-06 54.7 83 34.9
VMungo0540G0763 Vigna mungo HOM05D002009 ORTHO05D006831 8.6e-06 54.7 83 33.7


User provided reference genes

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