Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 4.6e-80 301.2 156 100.0
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 2.5e-30 136.0 92 81.5
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 1.4e-28 130.2 92 76.1
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 1.8e-28 129.8 95 74.7
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 2.4e-28 129.4 121 62.8
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 2.4e-28 129.4 95 73.7
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 5.3e-28 128.3 92 76.1
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 5.3e-28 128.3 92 76.1
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 6.9e-28 127.9 95 73.7
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 2.0e-27 126.3 92 73.9
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 3.8e-26 122.1 139 54.7
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 5.0e-26 121.7 73 83.6
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 8.5e-26 120.9 139 54.7
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 1.4e-25 120.2 91 72.5
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 3.2e-25 119.0 110 61.8
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 4.2e-25 118.6 95 69.5
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 9.4e-25 117.5 128 54.7
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 1.6e-24 116.7 123 51.2
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 1.6e-24 116.7 95 68.4
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 2.1e-24 116.3 73 79.5
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 2.1e-24 116.3 95 68.4
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 2.1e-24 116.3 79 74.7
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 2.7e-24 115.9 86 70.9
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 2.7e-24 115.9 78 76.9
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 2.7e-24 115.9 78 75.6
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 2.7e-24 115.9 78 76.9
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 2.7e-24 115.9 84 71.4
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 3.6e-24 115.5 111 59.5
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.6e-24 115.5 82 72.0
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 4.7e-24 115.2 111 59.5
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 6.1e-24 114.8 139 52.5
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 1.0e-23 114.0 73 78.1
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 1.4e-23 113.6 95 64.2
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 1.4e-23 113.6 78 75.6
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 1.4e-23 113.6 136 52.2
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 1.8e-23 113.2 135 49.6
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 1.8e-23 113.2 111 59.5
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 2.3e-23 112.8 73 78.1
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 2.3e-23 112.8 136 52.2
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 3.9e-23 112.1 95 63.2
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 3.9e-23 112.1 86 68.6
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 5.1e-23 111.7 80 68.8
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 5.1e-23 111.7 92 65.2
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 5.1e-23 111.7 92 65.2
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 5.1e-23 111.7 92 65.2
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 6.7e-23 111.3 95 63.2
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 6.7e-23 111.3 95 63.2
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 6.7e-23 111.3 73 75.3
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 6.7e-23 111.3 73 76.7
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 8.8e-23 110.9 95 64.2
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 8.8e-23 110.9 95 64.2
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 1.1e-22 110.5 92 65.2
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 1.1e-22 110.5 120 54.2
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 1.5e-22 110.2 73 74.0
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 1.5e-22 110.2 111 56.8
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 1.5e-22 110.2 73 75.3
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 1.5e-22 110.2 73 75.3
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 2.0e-22 109.8 95 62.1
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 2.0e-22 109.8 78 71.8
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 2.0e-22 109.8 108 56.5
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.0e-22 109.8 92 65.2
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 2.0e-22 109.8 132 51.5
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 2.0e-22 109.8 79 72.2
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 2.0e-22 109.8 73 75.3
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 2.0e-22 109.8 73 74.0
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 2.6e-22 109.4 92 64.1
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 3.3e-22 109.0 139 50.4
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 3.3e-22 109.0 79 70.9
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 4.4e-22 108.6 86 66.3
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 5.7e-22 108.2 138 50.0
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 7.4e-22 107.8 83 67.5
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 7.4e-22 107.8 73 71.2
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 9.7e-22 107.5 95 61.1
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 1.3e-21 107.1 136 50.0
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 1.3e-21 107.1 73 74.0
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 1.3e-21 107.1 135 46.7
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 2.2e-21 106.3 73 72.6
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 2.2e-21 106.3 127 50.4
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 2.2e-21 106.3 111 55.0
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 2.8e-21 105.9 73 68.5
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 4.8e-21 105.1 92 63.0
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 4.8e-21 105.1 73 68.5
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 4.8e-21 105.1 73 71.2
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 1.4e-20 103.6 92 60.9
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 1.8e-20 103.2 92 60.9
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 5.3e-20 101.7 73 67.1
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 7.0e-20 101.3 100 55.0
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 1.5e-19 100.1 73 65.8
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 2.0e-19 99.8 84 58.3
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 1.7e-18 96.7 111 53.2
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 6.5e-18 94.7 74 63.5
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 2.5e-17 92.8 84 57.1
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 3.2e-17 92.4 74 62.2
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 7.2e-17 91.3 138 42.0
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 9.4e-17 90.9 74 60.8
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 9.4e-17 90.9 74 58.1
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 4.7e-16 88.6 74 60.8
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 8.0e-16 87.8 74 59.5
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 1.0e-15 87.4 89 48.3
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 3.9e-15 85.5 74 59.5
arahy.Tifrunner.gnm1.ann1.QKB4J8 Arachis hypogaea HOM05D000189 ORTHO05D012726 1.1e-12 77.4 41 97.6
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 3.1e-12 75.9 52 73.1
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 1.2e-11 73.9 101 44.6
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 1.6e-11 73.6 45 77.8
arahy.Tifrunner.gnm1.ann1.J122TA Arachis hypogaea HOM05D000189 ORTHO05D000474 1.0e-10 70.9 45 84.4
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 6.5e-10 68.2 43 74.4
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 2.5e-09 66.2 112 39.3
arahy.Tifrunner.gnm1.ann1.89TX7D Arachis hypogaea HOM05D000189 ORTHO05D012726 4.2e-09 65.5 45 80.0
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 8.0e-08 61.2 83 47.0
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.5e-06 57.0 45 60.0
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 1.5e-06 57.0 72 48.6
arahy.Tifrunner.gnm1.ann1.7Q6R2W Arachis hypogaea HOM05D000189 ORTHO05D000474 2.0e-06 56.6 36 83.3
arahy.Tifrunner.gnm1.ann1.XN0VL7 Arachis hypogaea HOM05D000189 ORTHO05D000474 2.0e-06 56.6 36 83.3
TPR.G20792 Trifolium pratense HOM05D004422 ORTHO05D021544 7.5e-06 54.7 41 70.7


User provided reference genes

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