Gene: AT3G48110

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G48110
  • Transcript Identifier AT3G48110.1
  • Gene Type Coding gene
  • Location Chr3 : 17763111-17770964 : positive

Gene Family Information

  • ID HOM05D004422
  • #Genes/#Species 162/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G48110.1
  • symbol EDD1
  • Alias EDD
  • full_name EMBRYO-DEFECTIVE-DEVELOPMENT 1
  • uniprot Q8L785

Descriptions

  • Description glycine-tRNA ligase
  • Computational description EMBRYO-DEFECTIVE-DEVELOPMENT 1 (EDD1); FUNCTIONS IN: glycine-tRNA ligase activity; INVOLVED IN: regulation of embryonic development, glycyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal (InterPro:IPR002311), Glycyl-tRNA synthetase, class II, heterodimeric (InterPro:IPR006194), Glycyl-tRNA synthetase, class IIc, beta subunit (InterPro:IPR015944), Glycyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR002310); Has 11308 Blast hits to 11293 proteins in 1754 species: Archae - 4; Bacteria - 6864; Metazoa - 4; Fungi - 1; Plants - 40; Viruses - 0; Other Eukaryotes - 4395 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006426
IEA
GOA Databaseglycyl-tRNA aminoacylation
GO:0006426
ISS
Gene Ontologyglycyl-tRNA aminoacylation1
GO:0006426
IEA
InterProglycyl-tRNA aminoacylation
GO:0006412
IEA
GOA Databasetranslation
GO:0045995
IMP
Gene Ontologyregulation of embryonic development1
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004820
IEA
GOA Databaseglycine-tRNA ligase activity
GO:0004820
ISS
Gene Ontologyglycine-tRNA ligase activity
GO:0004820
IEA
InterProglycine-tRNA ligase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0004812
IEA
GOA Databaseaminoacyl-tRNA ligase activity
GO:0016874
IEA
GOA Databaseligase activity
GO:0046983
ISS
Gene Ontologyprotein dimerization activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IDA
IBA
Gene Ontologymitochondrion3 4
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IEA
InterProcytoplasm
GO:0009536
IEA
GOA Databaseplastid
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
IBA
Gene Ontologychloroplast stroma4 5
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast3 6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002310 Glycine-tRNA ligase, alpha subunit
IPR015944 Glycine-tRNA ligase, beta subunit
Mapman id Description
17.2.9 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glycine-tRNA ligase