Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SFPI36 Arachis hypogaea HOM05D003481 ORTHO05D004001 9.8e-52 206.5 100 100.0
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 9.3e-18 93.6 55 87.3
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 9.3e-18 93.6 55 87.3
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 2.1e-17 92.4 59 81.4
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 2.1e-17 92.4 59 81.4
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 2.1e-17 92.4 59 81.4
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 2.1e-17 92.4 59 81.4
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 3.5e-17 91.7 59 78.0
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 4.6e-17 91.3 59 79.7
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 4.6e-17 91.3 55 83.6
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.3e-16 89.7 59 78.0
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.3e-16 89.7 76 61.8
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 1.3e-16 89.7 57 78.9
MBI19_g43313_MAGBIO Magnolia biondii HOM05D003481 ORTHO05D004001 1.3e-16 89.7 59 76.3
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 1.3e-16 89.7 59 76.3
SEGI_29135 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 1.8e-16 89.4 71 64.8
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 2.3e-16 89.0 59 76.3
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 2.3e-16 89.0 59 76.3
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 2.3e-16 89.0 59 76.3
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 2.3e-16 89.0 59 76.3
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 2.3e-16 89.0 59 76.3
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.3e-16 89.0 59 76.3
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 2.3e-16 89.0 59 76.3
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 3.0e-16 88.6 59 76.3
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 3.0e-16 88.6 59 76.3
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 3.9e-16 88.2 59 74.6
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 3.9e-16 88.2 59 74.6
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 3.9e-16 88.2 59 72.9
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 5.1e-16 87.8 86 58.1
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 5.1e-16 87.8 76 59.2
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 5.1e-16 87.8 59 74.6
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 5.1e-16 87.8 59 72.9
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 5.1e-16 87.8 59 74.6
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 5.1e-16 87.8 59 74.6
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 5.1e-16 87.8 55 80.0
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 5.1e-16 87.8 59 74.6
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 6.7e-16 87.4 59 74.6
Nitab4.5_0001298g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 6.7e-16 87.4 51 76.5
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 8.7e-16 87.0 59 72.9
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 8.7e-16 87.0 59 74.6
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 8.7e-16 87.0 59 72.9
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.1e-15 86.7 72 59.7
CSS0035493 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.1e-15 86.7 71 63.4
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 1.1e-15 86.7 59 72.9
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.1e-15 86.7 59 72.9
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 1.1e-15 86.7 59 72.9
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.1e-15 86.7 59 72.9
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.1e-15 86.7 59 72.9
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.5e-15 86.3 59 74.6
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 1.5e-15 86.3 59 71.2
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 1.5e-15 86.3 59 72.9
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 1.9e-15 85.9 60 68.3
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 1.9e-15 85.9 59 72.9
Lsat_1_v5_gn_3_92020 Lactuca sativa HOM05D002302 ORTHO05D002728 1.9e-15 85.9 50 80.0
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 1.9e-15 85.9 59 72.9
Nitab4.5_0000378g0100 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.9e-15 85.9 60 68.3
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 1.9e-15 85.9 59 72.9
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 2.5e-15 85.5 59 72.9
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 3.3e-15 85.1 59 72.9
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 3.3e-15 85.1 59 69.5
Haze_05982 Corylus avellana HOM05D003481 ORTHO05D004001 3.3e-15 85.1 59 69.5
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 3.3e-15 85.1 54 74.1
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 3.3e-15 85.1 59 69.5
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 3.3e-15 85.1 55 76.4
Manes.03G069500 Manihot esculenta HOM05D003481 ORTHO05D004001 4.3e-15 84.7 48 83.3
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 4.3e-15 84.7 59 69.5
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 7.4e-15 84.0 59 69.5
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 7.4e-15 84.0 49 79.6
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 7.4e-15 84.0 49 79.6
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 7.4e-15 84.0 57 71.9
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 9.6e-15 83.6 59 71.2
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 9.6e-15 83.6 59 69.5
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 9.6e-15 83.6 59 69.5
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 9.6e-15 83.6 59 71.2
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 9.6e-15 83.6 60 68.3
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 9.6e-15 83.6 60 68.3
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 9.6e-15 83.6 49 81.6
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 1.3e-14 83.2 49 79.6
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 1.3e-14 83.2 59 69.5
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 2.1e-14 82.4 53 73.6
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 2.1e-14 82.4 51 74.5
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 2.1e-14 82.4 60 65.0
SHI31589 Sapria himalayana HOM05D003481 ORTHO05D004001 2.8e-14 82.0 52 71.2
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 3.7e-14 81.6 49 75.5
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 3.7e-14 81.6 68 61.8
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 3.7e-14 81.6 60 66.7
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 3.7e-14 81.6 59 67.8
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 4.8e-14 81.3 51 74.5
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 4.8e-14 81.3 59 71.2
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 4.8e-14 81.3 59 71.2
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 4.8e-14 81.3 59 71.2
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 4.8e-14 81.3 59 71.2
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 4.8e-14 81.3 59 71.2
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 4.8e-14 81.3 49 75.5
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 4.8e-14 81.3 59 71.2
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 6.2e-14 80.9 49 75.5
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 8.1e-14 80.5 59 61.0
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 8.1e-14 80.5 49 79.6
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 1.4e-13 79.7 66 59.1
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 1.8e-13 79.3 49 73.5
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 1.8e-13 79.3 49 73.5
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 1.8e-13 79.3 49 73.5
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 1.8e-13 79.3 49 73.5
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 1.8e-13 79.3 49 73.5
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 1.8e-13 79.3 49 73.5
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 1.8e-13 79.3 49 73.5
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 1.8e-13 79.3 49 73.5
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 1.8e-13 79.3 49 73.5
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 1.8e-13 79.3 49 73.5
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 1.8e-13 79.3 49 73.5
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 1.8e-13 79.3 49 73.5
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 2.4e-13 79.0 66 57.6
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 2.4e-13 79.0 47 80.9
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 2.4e-13 79.0 47 80.9
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 2.4e-13 79.0 49 67.3
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 2.4e-13 79.0 49 67.3
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 1.2e-12 76.6 59 55.9
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 2.0e-12 75.9 61 59.0
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 4.5e-12 74.7 49 73.5
CBR_g66144 Chara braunii HOM05D003481 ORTHO05D004001 1.0e-11 73.6 49 69.4
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 1.7e-11 72.8 57 61.4
Aqoxy3G00998 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 2.9e-11 72.0 45 73.3
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 3.8e-11 71.6 79 51.9
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 6.5e-11 70.9 49 67.3
AagrBONN_evm.TU.Sc2ySwM_117.2303 Anthoceros agrestis HOM05D003481 ORTHO05D004001 1.3e-08 63.2 79 49.4
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 1.8e-08 62.8 45 62.2


User provided reference genes

Program Settings