Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 0.0e+00 1332.8 647 100.0
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 0.0e+00 1325.8 647 99.5
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 0.0e+00 1185.2 647 87.9
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 0.0e+00 1180.6 647 86.6
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 0.0e+00 1177.2 647 87.0
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 0.0e+00 1176.4 647 87.0
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 0.0e+00 1173.3 647 87.5
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 0.0e+00 1153.3 648 85.0
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 0.0e+00 1144.8 649 84.0
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 0.0e+00 1142.5 647 84.5
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 0.0e+00 1138.3 648 84.0
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 0.0e+00 1124.0 648 82.4
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 0.0e+00 1123.2 651 82.2
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 0.0e+00 1121.3 650 81.8
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 0.0e+00 1119.8 651 82.2
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 0.0e+00 1117.1 650 80.9
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 0.0e+00 1115.5 650 82.3
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 0.0e+00 1111.3 651 81.3
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 0.0e+00 1109.4 656 80.6
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 0.0e+00 1108.6 650 80.2
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 0.0e+00 1104.7 651 80.2
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 0.0e+00 1100.5 650 80.0
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 0.0e+00 1099.7 653 80.1
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 0.0e+00 1097.8 651 80.0
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 0.0e+00 1097.0 652 80.7
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 0.0e+00 1096.3 655 80.6
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 0.0e+00 1095.5 651 80.0
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 0.0e+00 1093.2 654 80.0
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 0.0e+00 1093.2 648 80.7
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 0.0e+00 1087.4 651 79.6
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 0.0e+00 1086.2 651 79.3
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 0.0e+00 1083.6 653 78.9
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 0.0e+00 1082.8 652 79.3
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 0.0e+00 1080.9 704 75.4
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 0.0e+00 1078.9 651 79.0
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 0.0e+00 1077.4 651 78.2
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 0.0e+00 1076.6 651 79.9
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 4.4e-312 1074.3 651 79.1
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 8.9e-312 1072.8 655 78.2
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 8.9e-312 1072.8 661 78.8
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 8.9e-312 1072.8 657 78.8
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 8.9e-311 1069.7 589 87.8
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 1.9e-310 1068.5 652 79.1
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 2.2e-309 1065.1 657 78.7
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 2.8e-309 1064.7 654 78.6
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.8e-309 1064.7 676 76.0
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 4.8e-309 1063.9 656 77.9
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 4.8e-309 1063.9 656 77.9
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 4.8e-309 1063.9 657 78.8
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 1.1e-308 1062.8 653 78.6
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.8e-308 1062.0 659 77.8
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 3.1e-308 1061.2 650 77.5
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.6e-307 1058.9 650 77.2
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 2.0e-307 1058.5 652 78.1
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.0e-307 1058.5 657 77.8
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 5.9e-307 1057.0 648 77.2
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 7.7e-307 1056.6 651 77.0
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 7.7e-307 1056.6 648 77.5
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 1.0e-306 1056.2 648 76.9
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 2.9e-306 1054.7 648 77.0
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 2.9e-306 1054.7 706 73.7
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 6.5e-306 1053.5 649 77.0
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 7.2e-305 1050.0 648 76.5
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 7.2e-305 1050.0 648 76.5
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 1.6e-304 1048.9 650 77.1
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 1.6e-304 1048.9 655 76.2
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 3.6e-304 1047.7 650 76.6
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 6.1e-304 1047.0 604 81.5
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 1.4e-303 1045.8 648 76.2
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.8e-303 1045.4 669 76.7
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 1.2e-302 1042.7 648 76.4
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 2.0e-302 1042.0 648 76.1
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 2.0e-302 1042.0 658 77.2
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.4e-302 1040.8 664 75.6
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 1.7e-301 1038.9 675 74.1
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 8.3e-301 1036.6 673 74.3
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 5.4e-300 1033.9 646 76.6
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 1.6e-299 1032.3 680 73.5
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 1.0e-298 1029.6 651 75.9
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 2.9e-298 1028.1 678 74.3
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 5.0e-298 1027.3 651 76.0
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 1.1e-297 1026.2 678 73.6
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 2.6e-294 1015.0 654 74.8
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 2.6e-294 1015.0 666 72.4
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 7.5e-294 1013.4 654 75.7
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 1.8e-292 1008.8 661 74.0
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 2.4e-292 1008.4 632 77.7
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 6.6e-290 1000.3 596 80.4
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 8.6e-290 1000.0 659 73.7
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 4.3e-289 997.7 704 70.0
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 1.4e-284 982.6 660 72.4
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 3.2e-284 981.5 660 72.0
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.5e-283 978.0 681 70.0
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 1.5e-281 972.6 659 71.2
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 7.3e-281 970.3 673 71.3
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 8.0e-280 966.8 666 69.8
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 1.4e-279 966.1 653 71.1
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 3.1e-279 964.9 668 69.6
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 4.6e-275 951.0 665 71.0
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 7.3e-273 943.7 549 82.0
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 9.5e-273 943.3 668 69.0
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 3.7e-269 931.4 658 69.3
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 6.4e-269 930.6 634 72.4
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 4.1e-268 927.9 802 61.2
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.6e-267 926.0 668 67.5
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 6.0e-267 924.1 565 77.9
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 3.0e-266 921.8 565 77.9
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 5.1e-266 921.0 653 70.6
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 5.6e-265 917.5 698 66.2
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 4.4e-262 907.9 666 66.2
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 2.1e-256 889.0 664 66.0
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 4.4e-254 881.3 530 78.3
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 4.6e-251 871.3 594 74.2
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 6.2e-248 860.9 867 55.2
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 1.1e-247 860.1 500 80.4
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 7.9e-243 844.0 648 63.3
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 3.3e-233 812.0 668 61.5
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 8.2e-232 807.4 647 61.5
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 1.1e-231 807.0 475 80.0
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 4.3e-225 785.0 528 75.4
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 7.4e-209 731.1 662 57.4
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.2e-188 662.1 655 54.8
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 8.0e-187 657.9 709 48.5
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 6.3e-184 648.3 496 65.9
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 1.1e-183 647.5 663 52.0
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.1e-183 646.0 633 52.9
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 4.1e-183 645.6 653 54.4
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 1.1e-180 637.5 337 89.9
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 1.3e-173 614.0 390 76.4
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 4.7e-171 605.5 509 59.5
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 6.0e-158 562.0 668 47.0
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 1.2e-153 547.7 337 78.3
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.3e-149 534.3 366 71.9
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 1.8e-146 523.9 320 77.8
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.3e-139 501.1 655 45.3
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.2e-134 484.6 646 44.9
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 2.7e-134 483.4 276 83.0
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.3e-133 480.3 276 83.0
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 4.9e-128 462.6 342 68.7
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 4.5e-121 439.5 648 41.5
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 5.5e-111 406.0 387 58.4
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 1.2e-110 404.8 419 55.1
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 3.3e-108 396.7 232 80.2
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 6.1e-86 322.8 450 41.1
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 6.1e-78 296.2 653 30.8
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 6.1e-78 296.2 301 54.2
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 1.2e-76 292.0 496 38.5
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 9.1e-74 282.3 502 36.7
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 4.2e-71 273.5 233 58.4
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 7.2e-71 272.7 228 59.6
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 6.3e-67 259.6 559 36.5
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.4e-66 257.7 201 62.2
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.8e-61 241.5 272 48.2
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 6.8e-45 186.4 139 73.4
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.7e-43 180.6 145 68.3
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 1.7e-35 155.2 228 42.1
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 2.2e-35 154.8 79 92.4
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 2.4e-34 151.4 108 68.5
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 7.8e-33 146.4 112 63.4
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 1.9e-31 141.7 125 59.2
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 5.4e-26 123.6 64 90.6
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 3.5e-25 120.9 59 83.1
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 5.6e-23 113.6 69 73.9
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 9.6e-23 112.8 110 55.5
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 2.4e-21 108.2 61 72.1
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 9.0e-21 106.3 65 80.0
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 1.5e-20 105.5 155 41.3
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 4.4e-20 104.0 92 57.6
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.9e-18 98.6 50 92.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.0e-16 92.8 53 81.1
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 3.6e-14 84.3 50 78.0
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 1.4e-13 82.4 79 53.2
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 1.3e-11 75.9 74 51.4
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 1.3e-11 75.9 51 70.6
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 1.3e-11 75.9 48 81.2
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 2.2e-11 75.1 68 58.8
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 2.9e-11 74.7 41 80.5
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 1.9e-10 72.0 47 72.3
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 7.1e-10 70.1 42 76.2
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 4.6e-09 67.4 37 81.1
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 5.1e-08 63.9 48 56.2
unitig_748.g8732 Utricularia gibba HOM05D000639 ORTHO05D004019 3.7e-06 57.8 257 27.6
Lsat_1_v5_gn_8_57261 Lactuca sativa HOM05D000639 ORTHO05D005966 8.1e-06 56.6 135 31.9


User provided reference genes

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