Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 4126.6 2176 100.0
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 4087.0 2193 98.6
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 3223.0 2201 79.8
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 3221.8 2200 79.4
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 3219.5 2202 79.0
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 3210.2 2219 78.6
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 3184.0 2201 78.3
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 3107.4 2202 76.3
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 3053.8 2206 75.8
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 3036.9 2238 75.2
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 3008.0 2208 74.5
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 2875.9 2115 74.4
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2581.2 2216 65.7
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2474.1 2219 64.2
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2460.6 2221 62.2
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2447.5 2229 61.9
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2442.5 2238 61.5
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2433.7 2222 63.0
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2425.2 2216 61.3
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2424.0 2231 61.4
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2406.3 2221 61.1
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2398.2 2218 60.8
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2383.2 2224 60.6
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2380.9 2235 60.3
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2374.7 2233 60.1
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2371.3 2240 60.0
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2365.5 2239 60.6
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2355.5 2220 60.7
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2352.4 2220 59.7
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2347.4 2280 58.9
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2341.6 2266 58.9
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2325.8 2284 58.2
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2310.8 2274 58.7
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2298.5 2235 58.8
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2241.5 2234 59.3
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 2238.0 2225 58.2
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2187.5 2325 56.0
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2174.8 2239 56.4
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 2120.1 2225 56.2
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2077.4 2041 58.1
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2077.4 2043 58.1
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 2065.4 2235 54.8
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 2060.4 2207 54.8
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 2057.7 2231 54.7
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 2051.9 2310 53.4
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 2051.6 2237 54.1
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 2020.0 2302 53.3
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 2019.2 2231 54.5
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 1998.8 2229 53.3
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 1991.5 2231 52.8
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 1991.1 2231 52.8
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 1983.0 2216 52.5
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1968.0 2272 52.8
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1964.1 2231 52.9
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1956.8 2275 52.5
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1952.2 2235 53.2
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1942.2 2219 52.0
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1941.4 2212 52.0
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1932.5 2234 52.0
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1930.6 2217 51.9
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 1925.6 2239 52.5
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1921.7 2229 51.6
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 1915.6 2239 52.2
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1914.4 2241 51.2
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 1912.1 1718 61.8
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1905.2 2228 51.2
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1903.3 2238 51.3
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1899.8 2219 51.8
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1892.9 2219 51.9
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 1885.5 2297 50.9
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1883.6 2226 51.5
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1865.5 2231 50.4
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1860.9 1918 56.4
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1844.3 2205 51.3
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1830.5 2198 51.3
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1826.2 2246 50.8
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1825.8 2159 51.9
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1824.3 2229 50.9
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1813.5 2129 52.4
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1777.7 2210 50.0
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1776.1 2214 50.2
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1762.3 2169 51.8
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1730.7 2193 50.0
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1693.3 1391 63.0
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1657.1 1421 63.5
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1650.2 2146 48.9
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1613.6 2339 45.3
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1590.9 1391 61.4
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1587.4 1391 61.3
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1429.5 2260 43.0
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1426.0 2220 43.3
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1420.2 1470 57.6
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1311.2 1250 57.1
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1193.3 2231 39.2
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1191.4 1359 53.6
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1140.9 1617 46.6
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 1.0e-310 1071.2 1277 51.9
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 1.6e-308 1063.9 1240 52.5
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 3.8e-281 973.0 1392 47.9
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 2.2e-265 920.6 815 61.8
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 1.6e-255 887.9 1115 45.6
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 7.5e-237 825.9 1251 43.6
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 3.6e-207 727.2 831 58.8
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 5.1e-177 627.1 2484 27.7
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.1e-175 621.7 954 43.1
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 1.6e-159 568.9 1064 41.4
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 6.2e-159 567.0 837 50.2
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 8.1e-159 566.6 462 62.6
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.1e-158 566.2 837 50.1
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 5.5e-155 553.9 946 45.5
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 2.2e-135 488.8 1122 36.0
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 7.7e-133 480.3 1659 27.6
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 1.4e-129 469.5 334 73.1
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 2.7e-122 445.3 1466 26.8
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.2e-117 429.9 426 54.2
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 2.7e-114 418.7 884 37.1
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 3.6e-114 418.3 331 69.2
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.8e-105 389.4 647 41.1
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 1.2e-101 376.7 331 63.7
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 5.6e-91 341.3 448 54.0
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 2.3e-84 319.3 1865 22.8
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 3.0e-84 318.9 280 57.9
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 8.6e-84 317.4 305 58.7
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.9e-78 299.7 385 45.2
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 6.0e-77 294.7 240 70.8
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 6.6e-76 291.2 369 49.9
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 1.1e-73 283.9 215 66.0
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 1.4e-65 256.9 657 38.4
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.1e-65 255.8 164 78.7
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 5.2e-65 255.0 463 46.4
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.6e-59 235.0 153 77.1
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 6.2e-58 231.5 181 72.9
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 1.7e-55 223.4 137 81.0
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 2.4e-49 203.0 461 40.3
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 2.8e-42 179.5 129 72.9
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.5e-40 173.7 103 81.6
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.3e-39 170.6 705 34.9
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 1.2e-37 164.1 135 72.6
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 4.3e-35 155.6 208 43.8
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.0e-28 134.4 547 26.9
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.4e-28 134.0 332 33.7
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 2.3e-28 133.3 117 64.1
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 4.1e-25 122.5 72 91.7
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.3e-25 122.1 222 35.6
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 9.1e-25 121.3 115 65.2
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 2.1e-21 110.2 68 72.1
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 1.7e-18 100.5 97 62.9
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 5.3e-17 95.5 97 59.8
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 9.1e-17 94.7 205 32.7
Actinidia03884 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.1e-14 87.8 126 50.8
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.1e-14 87.8 107 55.1
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 3.6e-13 82.8 133 33.8
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 6.7e-12 78.6 74 62.2
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.3e-11 76.3 75 50.7
arahy.Tifrunner.gnm1.ann1.U6LB1L Arachis hypogaea HOM05D046571 ORTHO05D038823 9.7e-11 74.7 86 55.8
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 2.2e-10 73.6 61 59.0
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.1e-09 69.3 382 29.6
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 9.1e-09 68.2 45 73.3
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.6e-08 66.6 414 30.2
SHI25001 Sapria himalayana HOM05D004426 ORTHO05D005417 3.2e-06 59.7 66 47.0


User provided reference genes

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