Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 2.4e-246 855.1 462 100.0
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 2.1e-157 559.7 322 96.9
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 3.7e-154 548.9 316 96.5
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.0e-111 407.9 326 73.3
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 1.6e-109 400.6 331 71.0
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 2.6e-107 393.3 319 74.6
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 6.5e-106 388.7 329 70.8
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 9.6e-102 374.8 333 68.8
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 1.1e-97 361.3 333 67.9
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 4.6e-96 355.9 299 70.2
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 6.7e-95 352.1 299 69.9
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 5.3e-92 342.4 333 66.1
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 2.6e-91 340.1 329 64.7
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 7.7e-83 312.0 321 59.8
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.1e-81 308.1 327 59.9
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 3.6e-80 303.1 384 52.6
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 1.8e-79 300.8 317 58.0
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 2.3e-79 300.4 332 57.5
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 6.7e-79 298.9 355 54.4
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 6.7e-79 298.9 327 59.6
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 8.8e-79 298.5 328 59.8
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 2.6e-78 297.0 322 57.8
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 1.7e-77 294.3 322 57.8
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 4.8e-77 292.7 317 55.5
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 6.3e-77 292.4 319 55.5
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 7.0e-76 288.9 319 55.8
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 2.0e-75 287.3 373 52.3
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.0e-75 287.3 345 54.8
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 2.0e-75 287.3 331 56.5
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 2.6e-75 287.0 319 56.1
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.5e-75 286.6 407 49.1
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 5.9e-75 285.8 324 58.3
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 7.7e-75 285.4 317 58.7
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 7.7e-75 285.4 315 55.9
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 1.3e-74 284.6 321 58.9
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 2.2e-74 283.9 319 56.4
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 6.5e-74 282.3 331 56.8
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 1.2e-72 278.1 332 53.6
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 2.7e-72 276.9 332 55.4
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 3.6e-72 276.6 331 54.7
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 6.1e-72 275.8 316 56.0
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 1.4e-71 274.6 318 55.3
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 6.7e-71 272.3 339 55.2
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 5.7e-70 269.2 338 52.7
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 7.5e-70 268.9 328 55.5
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 1.7e-69 267.7 339 55.2
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 2.2e-69 267.3 348 53.4
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 2.2e-69 267.3 353 53.3
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 2.8e-69 266.9 348 53.4
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 6.3e-69 265.8 319 54.9
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 1.8e-68 264.2 348 53.7
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 7.0e-68 262.3 320 53.4
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 2.0e-67 260.8 321 53.6
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 1.3e-66 258.1 313 53.0
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 2.9e-66 256.9 318 54.4
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 2.9e-66 256.9 319 53.0
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 2.9e-66 256.9 310 52.9
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 5.5e-65 252.7 363 47.7
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 1.0e-63 248.4 356 48.3
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 1.8e-63 247.7 354 48.3
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.8e-63 245.4 341 49.3
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 1.3e-61 241.5 326 50.6
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 6.3e-61 239.2 312 51.9
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 1.8e-60 237.7 356 48.3
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 3.1e-60 236.9 269 54.3
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 3.1e-60 236.9 300 51.7
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 7.0e-60 235.7 338 48.2
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.7e-59 233.8 185 77.8
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 2.7e-59 233.8 198 66.7
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 2.3e-58 230.7 360 47.2
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.2e-57 226.5 279 54.1
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 1.2e-56 224.9 276 51.8
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 2.1e-56 224.2 281 52.7
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 1.5e-54 218.0 401 43.4
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 2.0e-54 217.6 369 43.4
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 5.7e-54 216.1 329 49.8
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 7.5e-54 215.7 323 48.9
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 8.3e-53 212.2 353 45.3
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.1e-52 211.8 275 51.6
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 1.4e-52 211.5 365 44.1
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.8e-52 211.1 283 54.8
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 3.1e-52 210.3 359 44.8
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 4.7e-48 196.4 293 45.7
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 1.8e-47 194.5 371 44.2
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 3.0e-47 193.7 315 45.1
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 8.9e-47 192.2 284 48.2
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 8.9e-47 192.2 284 48.2
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 8.9e-47 192.2 380 42.1
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 2.0e-46 191.0 409 39.9
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 1.7e-45 188.0 286 46.2
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.7e-45 188.0 258 50.0
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 3.7e-45 186.8 285 46.3
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 3.7e-45 186.8 230 53.9
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 6.4e-45 186.0 361 42.7
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 1.1e-44 185.3 361 40.4
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 1.8e-44 184.5 261 48.3
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 2.4e-44 184.1 261 49.0
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 2.0e-43 181.0 251 47.0
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.7e-43 180.6 131 75.6
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 1.3e-42 178.3 407 39.1
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.5e-41 174.1 221 55.2
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 4.3e-41 173.3 409 38.6
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 7.3e-41 172.6 230 53.0
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 4.0e-39 166.8 288 42.7
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 4.1e-36 156.8 268 41.4
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 7.8e-35 152.5 139 64.0
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.0e-34 150.6 146 62.3
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 5.6e-33 146.4 325 38.8
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.2e-32 145.2 148 65.5
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 3.1e-31 140.6 152 59.9
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 7.5e-30 136.0 234 43.2
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 2.9e-29 134.0 254 40.6
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 1.3e-26 125.2 262 38.5
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 6.6e-26 122.9 149 58.4
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.1e-20 105.5 114 64.9
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.1e-20 105.5 114 64.9
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 1.4e-20 105.1 105 63.8
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 3.2e-20 104.0 65 76.9
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 3.2e-20 104.0 68 75.0
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.1e-19 101.3 67 74.6
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 6.0e-19 99.8 87 62.1
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 3.9e-18 97.1 128 48.4
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 3.3e-17 94.0 280 35.7
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 5.6e-17 93.2 157 45.2
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 2.1e-16 91.3 142 43.7
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.0e-15 87.0 140 42.1
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 1.2e-14 85.5 188 38.8
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 8.4e-13 79.3 118 42.4
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 1.9e-12 78.2 189 36.0
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.4e-06 57.4 91 41.8
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.4e-06 57.4 91 41.8


User provided reference genes

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