Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 1.4e-65 253.1 155 100.0
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 1.9e-41 172.9 116 75.9
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 3.2e-41 172.2 124 71.0
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 3.9e-39 165.2 117 79.5
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 8.7e-39 164.1 118 77.1
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 2.5e-38 162.5 128 71.1
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 2.5e-38 162.5 117 75.2
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 3.6e-37 158.7 105 74.3
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 1.1e-36 157.1 117 73.5
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 1.8e-36 156.4 101 77.2
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 7.9e-32 141.0 114 68.4
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 1.0e-31 140.6 111 64.9
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 1.8e-31 139.8 79 81.0
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 1.8e-31 139.8 118 63.6
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 5.1e-31 138.3 112 62.5
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 1.5e-30 136.7 123 59.3
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 1.5e-30 136.7 73 82.2
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 1.9e-30 136.3 86 75.6
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 2.5e-30 136.0 73 82.2
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 2.5e-30 136.0 73 82.2
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 2.5e-30 136.0 73 82.2
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 2.5e-30 136.0 73 82.2
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 2.5e-30 136.0 73 82.2
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 2.5e-30 136.0 73 82.2
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 2.5e-30 136.0 73 82.2
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 2.5e-30 136.0 73 82.2
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 2.5e-30 136.0 73 82.2
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 2.5e-30 136.0 73 82.2
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 2.5e-30 136.0 73 82.2
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 2.5e-30 136.0 73 82.2
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 2.5e-30 136.0 73 82.2
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 3.3e-30 135.6 76 80.3
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 3.3e-30 135.6 70 85.7
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 3.3e-30 135.6 81 76.5
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 3.3e-30 135.6 82 81.7
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 5.6e-30 134.8 105 70.5
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 7.4e-30 134.4 74 79.7
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 9.6e-30 134.0 95 64.2
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 1.3e-29 133.7 74 81.1
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 1.3e-29 133.7 80 78.8
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.6e-29 133.3 122 65.6
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 1.6e-29 133.3 71 83.1
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 1.6e-29 133.3 71 83.1
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 1.6e-29 133.3 71 83.1
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 3.7e-29 132.1 71 81.7
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 3.7e-29 132.1 71 81.7
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 3.7e-29 132.1 71 81.7
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 6.2e-29 131.3 80 77.5
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 6.2e-29 131.3 80 77.5
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 6.2e-29 131.3 80 77.5
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 8.1e-29 131.0 88 69.3
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 8.1e-29 131.0 71 81.7
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 8.1e-29 131.0 126 56.3
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 1.1e-28 130.6 88 68.2
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 1.8e-28 129.8 80 76.2
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 2.4e-28 129.4 74 78.4
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 2.4e-28 129.4 74 78.4
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 2.4e-28 129.4 74 78.4
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 2.4e-28 129.4 74 78.4
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 2.4e-28 129.4 121 60.3
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 3.1e-28 129.0 80 76.2
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 4.0e-28 128.6 71 84.5
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 2.0e-27 126.3 74 77.0
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 1.7e-26 123.2 73 82.2
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 2.2e-26 122.9 93 66.7
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 2.2e-26 122.9 74 75.7
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 6.5e-26 121.3 105 58.1
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.1e-25 120.6 135 51.9
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.1e-25 120.6 135 51.9
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 5.5e-25 118.2 70 77.1
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 3.5e-24 115.5 80 71.2
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 3.5e-24 115.5 80 71.2
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 3.5e-24 115.5 80 71.2
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 4.6e-24 115.2 80 70.0
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 4.6e-24 115.2 80 70.0
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 4.6e-24 115.2 80 70.0
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 4.6e-24 115.2 80 70.0
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 4.6e-24 115.2 80 70.0
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 4.6e-24 115.2 80 70.0
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 4.6e-24 115.2 80 70.0
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 4.6e-24 115.2 80 70.0
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 4.6e-24 115.2 80 70.0
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 6.0e-24 114.8 80 71.2
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 7.9e-24 114.4 57 87.7
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 7.9e-24 114.4 83 66.3
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 1.8e-23 113.2 75 73.3
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 3.9e-23 112.1 80 68.8
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 1.3e-21 107.1 55 85.5
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 1.3e-21 107.1 55 85.5
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 1.3e-21 107.1 55 85.5
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 1.3e-21 107.1 55 85.5
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 1.3e-21 107.1 55 85.5
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 1.6e-21 106.7 71 70.4
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 1.4e-20 103.6 86 58.1
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 4.0e-20 102.1 55 81.8
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 5.3e-20 101.7 54 87.0
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 1.5e-19 100.1 73 63.0
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-19 100.1 73 63.0
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 2.6e-19 99.4 65 70.8
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 3.4e-19 99.0 67 68.7
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-19 98.6 73 61.6
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 1.3e-18 97.1 77 62.3
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 1.1e-17 94.0 114 50.0
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.2e-17 92.4 114 49.1
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.2e-17 92.4 114 49.1
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 5.5e-17 91.7 97 53.6
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 1.6e-16 90.1 71 64.8
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 3.5e-16 89.0 62 64.5
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.1e-16 88.2 61 65.6
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 1.8e-15 86.7 54 72.2
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 1.5e-14 83.6 69 60.9
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 1.6e-13 80.1 63 54.0
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.8e-13 78.6 53 66.0
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.6e-11 72.8 76 55.3
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 3.4e-11 72.4 57 56.1
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 5.9e-11 71.6 58 56.9
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 5.9e-11 71.6 58 56.9
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 7.7e-11 71.2 72 44.4
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 2.2e-10 69.7 76 44.7
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 2.2e-10 69.7 62 53.2
MBI15_g40528_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D008771 1.1e-09 67.4 48 68.8
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.9e-09 66.6 62 51.6
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 4.2e-09 65.5 35 82.9
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 4.2e-09 65.5 35 82.9
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 4.2e-09 65.5 35 82.9
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 9.4e-09 64.3 45 71.1
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 4.6e-08 62.0 76 48.7
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.4e-07 60.5 39 74.4
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 1.8e-07 60.1 39 69.2
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.0e-07 59.3 76 46.1
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 2.5e-06 56.2 35 71.4


User provided reference genes

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