Gene: AT4G11175

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G11175
  • Transcript Identifier AT4G11175.1
  • Gene Type Coding gene
  • Location Chr4 : 6818162-6818806 : positive

Gene Family Information

  • ID HOM05D002824
  • #Genes/#Species 246/74
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G11175.1
  • uniprot O82499

Descriptions

  • Description Nucleic acid-binding, OB-fold-like protein
  • Computational description Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), Translation initiation factor IF-1 (InterPro:IPR004368); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
GOA Databasetranslation
GO:0006413
IEA
GOA Databasetranslational initiation
GO:0006413
IEA
InterProtranslational initiation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
ISO
PLAZA Homology (enrichment)structural constituent of ribosome HOM05D002824
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003743
IEA
GOA Databasetranslation initiation factor activity
GO:0003743
IEA
InterProtranslation initiation factor activity
GO:0043022
IBA
Gene Ontologyribosome binding1
GO:0003729
IDA
Gene OntologymRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
ISO
PLAZA Homology (enrichment)ribosome HOM05D002824
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast3
GO:0009536
IEA
GOA Databaseplastid
GO:0005829
HDA
IBA
Gene Ontologycytosol1 4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022967 RNA-binding domain, S1
IPR004368 Translation initiation factor IF-1
IPR012340 Nucleic acid-binding, OB-fold
IPR006196 RNA-binding domain, S1, IF1 type
Mapman id Description
17.7.3.2 Protein biosynthesis.organelle machinery.translation initiation.initiation factor (IF-1)