Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R9RUHP Arachis hypogaea HOM05D003481 ORTHO05D004001 2.9e-194 681.8 364 100.0
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 8.8e-175 617.1 329 99.7
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 1.9e-121 439.9 330 71.8
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 3.6e-120 435.6 330 71.8
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 4.0e-119 432.2 332 71.7
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 3.5e-115 419.1 343 67.3
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 6.6e-114 414.8 293 76.1
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 1.5e-113 413.7 344 66.6
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 1.5e-113 413.7 342 64.9
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 4.3e-113 412.1 348 66.4
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 7.3e-113 411.4 343 67.1
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 9.6e-113 411.0 352 65.6
Manes.03G070216 Manihot esculenta HOM05D003481 ORTHO05D004001 9.6e-113 411.0 348 64.9
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 1.6e-112 410.2 329 70.2
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 4.0e-111 405.6 329 68.1
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 5.3e-111 405.2 329 69.3
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 9.9e-110 401.0 361 61.2
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 2.2e-109 399.8 304 69.7
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 8.4e-109 397.9 314 67.8
Lj1A1155T51 Lonicera japonica HOM05D003481 ORTHO05D004001 1.1e-108 397.5 294 72.8
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 2.4e-108 396.4 350 63.7
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 3.2e-108 396.0 312 68.3
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 2.1e-107 393.3 345 65.8
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 2.7e-107 392.9 307 69.1
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 3.5e-107 392.5 332 67.8
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 6.0e-107 391.7 330 67.3
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 2.3e-106 389.8 307 67.8
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 2.3e-106 389.8 307 67.4
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 6.6e-106 388.3 318 66.4
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 1.9e-105 386.7 310 66.8
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 1.9e-105 386.7 314 66.6
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 1.9e-105 386.7 318 66.0
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 2.8e-104 382.9 323 64.7
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 2.8e-104 382.9 323 64.7
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 4.8e-104 382.1 307 68.7
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 6.2e-104 381.7 333 65.8
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 8.1e-104 381.3 347 61.7
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 8.1e-104 381.3 339 64.3
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 1.1e-103 380.9 319 66.1
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 1.1e-103 380.9 311 67.2
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 1.8e-103 380.2 313 66.5
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 5.3e-103 378.6 336 63.1
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 6.9e-103 378.3 329 64.4
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 9.0e-103 377.9 353 62.9
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 1.5e-102 377.1 320 65.6
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 2.0e-102 376.7 313 65.8
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 2.0e-102 376.7 313 65.8
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 2.6e-102 376.3 313 65.5
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 2.6e-102 376.3 313 65.8
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 5.8e-102 375.2 313 65.8
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 5.8e-102 375.2 322 64.9
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 9.9e-102 374.4 313 65.5
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 9.9e-102 374.4 349 62.2
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 1.7e-101 373.6 325 64.9
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 2.2e-101 373.2 353 62.3
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 4.9e-101 372.1 306 66.3
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 4.9e-101 372.1 313 65.2
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 6.4e-101 371.7 350 61.1
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 8.4e-101 371.3 364 60.7
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 1.4e-100 370.5 348 60.9
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 1.9e-100 370.2 303 66.3
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 4.2e-100 369.0 317 64.7
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 1.6e-99 367.1 306 66.0
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 3.5e-99 365.9 317 64.4
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 3.5e-99 365.9 290 67.6
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 1.3e-98 364.0 354 60.5
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 1.8e-98 363.6 354 60.5
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.8e-98 363.6 272 70.6
Cpa.g.sc192.16 Carica papaya HOM05D003481 ORTHO05D004001 3.0e-98 362.8 312 66.3
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 3.9e-98 362.5 350 61.1
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 3.9e-98 362.5 344 62.2
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 5.1e-98 362.1 318 64.8
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 6.7e-98 361.7 348 60.9
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 6.7e-98 361.7 354 60.2
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 6.7e-98 361.7 294 67.3
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.3e-97 359.4 265 71.7
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 4.3e-97 359.0 264 71.6
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 7.4e-97 358.2 318 64.2
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 3.1e-95 352.8 356 59.6
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 2.0e-94 350.1 345 60.6
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 2.6e-94 349.7 295 63.7
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 4.5e-94 349.0 315 63.5
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 4.5e-94 349.0 329 60.2
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 2.9e-93 346.3 296 63.9
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 2.9e-93 346.3 347 60.2
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 4.9e-93 345.5 295 63.1
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 6.4e-93 345.1 344 58.4
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 1.1e-92 344.4 289 66.4
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 1.1e-92 344.4 331 60.4
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 2.7e-91 339.7 344 58.1
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 6.0e-91 338.6 348 57.8
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 7.9e-91 338.2 344 59.0
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 1.0e-90 337.8 343 57.1
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 1.8e-90 337.0 314 62.4
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 2.3e-90 336.7 326 59.2
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 6.7e-90 335.1 313 61.0
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 6.7e-90 335.1 349 54.2
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 1.5e-89 334.0 305 62.6
Haze_05983 Corylus avellana HOM05D003481 ORTHO05D004001 5.7e-89 332.0 314 61.5
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 7.6e-86 321.6 266 66.9
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 4.2e-84 315.8 212 75.9
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 9.3e-84 314.7 232 72.0
Actinidia29310 Actinidia chinensis HOM05D003481 ORTHO05D004001 2.7e-83 313.2 280 63.2
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 1.3e-82 310.8 321 55.1
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 2.3e-82 310.1 326 55.2
TAR624G0988 Trochodendron aralioides HOM05D003481 ORTHO05D004001 6.5e-77 292.0 261 61.7
CSS0036853 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 5.5e-76 288.9 249 65.1
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 9.4e-76 288.1 295 53.6
SHI31592 Sapria himalayana HOM05D003481 ORTHO05D004001 4.6e-75 285.8 276 56.5
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 1.0e-74 284.6 299 51.2
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 1.8e-74 283.9 275 54.5
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 2.3e-74 283.5 309 51.1
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 1.7e-72 277.3 308 52.3
ATR1132G122 Amborella trichopoda HOM05D003481 ORTHO05D004001 2.8e-72 276.6 329 53.2
SEGI_08137 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 6.3e-72 275.4 243 59.7
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 6.9e-71 271.9 367 45.2
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 6.9e-71 271.9 309 51.5
Oeu051246.1 Olea europaea HOM05D003481 ORTHO05D004001 1.2e-70 271.2 304 55.9
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 3.2e-68 263.1 306 50.7
Solyc02g030100.4 Solanum lycopersicum HOM05D003481 ORTHO05D004001 4.2e-68 262.7 254 60.2
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 2.7e-67 260.0 241 61.0
Peaxi162Scf00267g00085 Petunia axillaris HOM05D003481 ORTHO05D004001 1.1e-65 254.6 290 53.4
Nitab4.5_0000378g0090 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.1e-63 246.5 239 59.0
Nitab4.5_0003773g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.1e-63 246.5 169 73.4
Nitab4.5_0001298g0050 Nicotiana tabacum HOM05D003481 ORTHO05D004001 7.0e-63 245.4 275 55.3
CBR_g56099 Chara braunii HOM05D003481 ORTHO05D004001 2.5e-60 236.9 370 42.4
BcaNung07304 Brassica carinata HOM05D003481 ORTHO05D004001 4.3e-28 129.8 189 48.1
FAN27G0233 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.4e-26 124.8 154 48.1
FvH4_4g15480 Fragaria vesca HOM05D003481 ORTHO05D004001 6.8e-26 122.5 112 56.2
FAN18G3112 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.0e-25 120.9 111 56.8
FvH4_5g17630 Fragaria vesca HOM05D003481 ORTHO05D004001 2.6e-25 120.6 112 55.4
FvH4_4g15181 Fragaria vesca HOM05D003481 ORTHO05D004001 8.3e-24 115.5 111 55.9
FAN10G3643 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.4e-23 114.0 154 46.8
FAN11G1212 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.7e-21 107.8 112 53.6
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 4.3e-20 103.2 171 36.3
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 9.8e-17 92.0 193 34.7
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 7.8e-14 82.4 51 78.4
Actinidia33646 Actinidia chinensis HOM05D003481 ORTHO05D004001 3.0e-13 80.5 54 72.2
Nitab4.5_0000378g0100 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.0e-13 80.5 48 81.2
Nitab4.5_0001298g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.0e-13 80.5 48 81.2
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 3.9e-13 80.1 51 76.5
Cfa023843 Carpinus fangiana HOM05D003481 ORTHO05D004001 8.6e-13 79.0 211 28.9
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 2.5e-12 77.4 51 74.5
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.5e-12 77.4 59 62.7
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 4.3e-12 76.6 42 83.3
Actinidia29309 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.6e-11 74.7 55 67.3
MCO09G025 Micromonas commoda HOM05D003481 ORTHO05D004001 2.1e-11 74.3 211 27.0
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 6.8e-10 69.3 85 45.9
RcHm_v2.0_Chr2g0113461 Rosa chinensis HOM05D003481 ORTHO05D004001 1.9e-07 61.2 35 80.0


User provided reference genes

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