Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R6HD8X Arachis hypogaea HOM05D004200 ORTHO05D004996 2.0e-26 122.5 108 100.0
Solyc05g056280.2 Solanum lycopersicum HOM05D004200 ORTHO05D004996 1.1e-08 63.5 43 76.7
Sopen05g034670 Solanum pennellii HOM05D004200 ORTHO05D004996 1.1e-08 63.5 43 76.7
PGSC0003DMG402023454 Solanum tuberosum HOM05D004200 ORTHO05D004996 1.1e-08 63.5 43 76.7
AL3G12970 Arabidopsis lyrata HOM05D004200 ORTHO05D004996 1.5e-08 63.2 39 84.6
AT3G03340 Arabidopsis thaliana HOM05D004200 ORTHO05D004996 1.5e-08 63.2 39 84.6
arahy.Tifrunner.gnm1.ann1.26W00C Arachis hypogaea HOM05D004200 ORTHO05D004996 1.5e-08 63.2 41 82.9
arahy.Tifrunner.gnm1.ann1.28W6CD Arachis hypogaea HOM05D004200 ORTHO05D004996 1.5e-08 63.2 41 82.9
Carub.0003s0251 Capsella rubella HOM05D004200 ORTHO05D004996 1.5e-08 63.2 39 84.6
THA.LOC104802907 Tarenaya hassleriana HOM05D004200 ORTHO05D004996 1.5e-08 63.2 43 76.7
CARHR077380 Cardamine hirsuta HOM05D004200 ORTHO05D004996 1.9e-08 62.8 39 84.6
Cc09_g03900 Coffea canephora HOM05D004200 ORTHO05D004996 3.2e-08 62.0 43 76.7
Sc09g0001390 Simmondsia chinensis HOM05D004200 ORTHO05D004996 3.2e-08 62.0 41 80.5
arahy.Tifrunner.gnm1.ann1.V65UZ0 Arachis hypogaea HOM05D004200 ORTHO05D004996 4.2e-08 61.6 36 88.9
CAN.G1921.6 Capsicum annuum HOM05D004200 ORTHO05D004996 4.2e-08 61.6 39 82.1
Nitab4.5_0000582g0030 Nicotiana tabacum HOM05D004200 ORTHO05D004996 4.2e-08 61.6 38 86.8
Oeu064498.2 Olea europaea HOM05D004200 ORTHO05D004996 4.2e-08 61.6 43 74.4
SalBow6G2550 Salvia bowleyana HOM05D004200 ORTHO05D004996 4.2e-08 61.6 41 80.5
Aa31LG5G13880 Aethionema arabicum HOM05D004200 ORTHO05D004996 5.5e-08 61.2 37 86.5
MD04G1246800 Malus domestica HOM05D004200 ORTHO05D004996 5.5e-08 61.2 41 82.9
MD12G1263400 Malus domestica HOM05D004200 ORTHO05D004996 5.5e-08 61.2 41 82.9
Nitab4.5_0000080g0180 Nicotiana tabacum HOM05D004200 ORTHO05D004996 5.5e-08 61.2 43 76.7
Nitab4.5_0004652g0020 Nicotiana tabacum HOM05D004200 ORTHO05D004996 5.5e-08 61.2 43 76.7
Prupe.6G363000 Prunus persica HOM05D004200 ORTHO05D004996 5.5e-08 61.2 41 82.9
PGR119G0338 Punica granatum HOM05D004200 ORTHO05D004996 5.5e-08 61.2 43 76.7
THA.LOC104820847 Tarenaya hassleriana HOM05D004200 ORTHO05D004996 5.5e-08 61.2 41 80.5
Atru.chr12.1727 Acer truncatum HOM05D004200 ORTHO05D004996 7.2e-08 60.8 41 80.5
CSS0002176 Camellia sinensis var. sinensis HOM05D004200 ORTHO05D004996 7.2e-08 60.8 41 78.0
CANSAT54G2186 Cannabis sativa HOM05D004200 ORTHO05D004996 7.2e-08 60.8 41 80.5
Glyma.09G248800 Glycine max HOM05D004200 ORTHO05D004996 7.2e-08 60.8 41 80.5
Glyma.18G243900 Glycine max HOM05D004200 ORTHO05D004996 7.2e-08 60.8 41 80.5
Lj1C579T11 Lonicera japonica HOM05D004200 ORTHO05D004996 7.2e-08 60.8 41 80.5
MBI11_g10486_MAGBIO Magnolia biondii HOM05D004200 ORTHO05D004996 7.2e-08 60.8 41 82.9
Nn1g09712 Nelumbo nucifera HOM05D004200 ORTHO05D004996 7.2e-08 60.8 43 79.1
RcHm_v2.0_Chr3g0447621 Rosa chinensis HOM05D004200 ORTHO05D004996 7.2e-08 60.8 41 80.5
VMungo1383G0269 Vigna mungo HOM05D004200 ORTHO05D004996 7.2e-08 60.8 41 80.5
Aqoxy2G04143 Aquilegia oxysepala HOM05D004200 ORTHO05D004996 9.4e-08 60.5 41 80.5
Cpa.g.sc123.38 Carica papaya HOM05D004200 ORTHO05D004996 9.4e-08 60.5 41 78.0
Ciclev10012249m.g Citrus clementina HOM05D004200 ORTHO05D004996 9.4e-08 60.5 39 84.6
Manes.12G003500 Manihot esculenta HOM05D004200 ORTHO05D004996 9.4e-08 60.5 39 84.6
Manes.13G003600 Manihot esculenta HOM05D004200 ORTHO05D004996 9.4e-08 60.5 39 84.6
Nn7g37558 Nelumbo nucifera HOM05D004200 ORTHO05D004996 9.4e-08 60.5 41 80.5
Oeu034779.1 Olea europaea HOM05D004200 ORTHO05D004996 9.4e-08 60.5 41 78.0
Peaxi162Scf00742g00213 Petunia axillaris HOM05D004200 ORTHO05D004996 9.4e-08 60.5 34 97.1
Potri.013G084800 Populus trichocarpa HOM05D004200 ORTHO05D004996 9.4e-08 60.5 39 84.6
Potri.019G055000 Populus trichocarpa HOM05D004200 ORTHO05D004996 9.4e-08 60.5 39 84.6
Sabra19G0064000 Salix brachista HOM05D004200 ORTHO05D004996 9.4e-08 60.5 39 84.6
TAR362G0304 Trochodendron aralioides HOM05D004200 ORTHO05D004996 9.4e-08 60.5 41 80.5
GSVIVG01019063001 Vitis vinifera HOM05D004200 ORTHO05D004996 9.4e-08 60.5 41 78.0
AL6G28510 Arabidopsis lyrata HOM05D004200 ORTHO05D004996 1.2e-07 60.1 41 78.0
AT5G17440 Arabidopsis thaliana HOM05D004200 ORTHO05D004996 1.2e-07 60.1 41 78.0
MSTRG.8204 Avicennia marina HOM05D004200 ORTHO05D004996 1.2e-07 60.1 39 82.1
Dinv00535 Davidia involucrata HOM05D004200 ORTHO05D004996 1.2e-07 60.1 41 80.5
Dinv29084 Davidia involucrata HOM05D004200 ORTHO05D004996 1.2e-07 60.1 41 80.5
Migut.F02106 Erythranthe guttata HOM05D004200 ORTHO05D004996 1.2e-07 60.1 39 82.1
Eucgr.B01428 Eucalyptus grandis HOM05D004200 ORTHO05D004996 1.2e-07 60.1 43 76.7
FvH4_6g00250 Fragaria vesca HOM05D004200 ORTHO05D004996 1.2e-07 60.1 41 80.5
FAN02G3263 Fragaria x ananassa HOM05D004200 ORTHO05D004996 1.2e-07 60.1 41 80.5
FAN05G5080 Fragaria x ananassa HOM05D004200 ORTHO05D004996 1.2e-07 60.1 41 80.5
FAN09G2946 Fragaria x ananassa HOM05D004200 ORTHO05D004996 1.2e-07 60.1 41 80.5
FAN14G5194 Fragaria x ananassa HOM05D004200 ORTHO05D004996 1.2e-07 60.1 41 80.5
Phvul.008G052700 Phaseolus vulgaris HOM05D004200 ORTHO05D004996 1.2e-07 60.1 41 78.0
Actinidia03266 Actinidia chinensis HOM05D004200 ORTHO05D004996 1.6e-07 59.7 41 78.0
EL10Ac4g10002 Beta vulgaris HOM05D004200 ORTHO05D004996 1.6e-07 59.7 43 74.4
CSS0000339 Camellia sinensis var. sinensis HOM05D004200 ORTHO05D004996 1.6e-07 59.7 38 84.2
Hma1.2p1_0220F.1_g092980 Hydrangea macrophylla HOM05D004200 ORTHO05D004996 1.6e-07 59.7 39 84.6
PSO210G5049 Papaver somniferum HOM05D004200 ORTHO05D004996 1.6e-07 59.7 38 84.2
PSO832G1195 Papaver somniferum HOM05D004200 ORTHO05D004996 1.6e-07 59.7 37 86.5
Sc16g0010470 Simmondsia chinensis HOM05D004200 ORTHO05D004996 1.6e-07 59.7 41 78.0
TAR633G1708 Trochodendron aralioides HOM05D004200 ORTHO05D004996 1.6e-07 59.7 41 78.0
Ca_08002_v3 Cicer arietinum L. HOM05D004200 ORTHO05D004996 2.1e-07 59.3 39 82.1
Duzib235G1318 Durio zibethinus HOM05D004200 ORTHO05D004996 2.1e-07 59.3 41 78.0
Migut.F01862 Erythranthe guttata HOM05D004200 ORTHO05D004996 2.1e-07 59.3 41 78.0
Gohir.A02G105800 Gossypium hirsutum HOM05D004200 ORTHO05D004996 2.1e-07 59.3 41 78.0
Gohir.D03G078000 Gossypium hirsutum HOM05D004200 ORTHO05D004996 2.1e-07 59.3 41 78.0
Gorai.003G086100 Gossypium raimondii HOM05D004200 ORTHO05D004996 2.1e-07 59.3 41 78.0
Medtr7g080320 Medicago truncatula HOM05D004200 ORTHO05D004996 2.1e-07 59.3 39 82.1
Psat3g102400 Pisum sativum HOM05D004200 ORTHO05D004996 2.1e-07 59.3 39 82.1
SalBow1G8230 Salvia bowleyana HOM05D004200 ORTHO05D004996 2.1e-07 59.3 41 78.0
Thecc.05G189300 Theobroma cacao HOM05D004200 ORTHO05D004996 2.1e-07 59.3 41 78.0
TPR.G33888 Trifolium pratense HOM05D004200 ORTHO05D004996 2.1e-07 59.3 39 82.1
vmacro10414 Vaccinium macrocarpon HOM05D004200 ORTHO05D004996 2.1e-07 59.3 34 94.1
MELO3C008563.2 Cucumis melo HOM05D004200 ORTHO05D004996 2.7e-07 58.9 41 75.6
CsaV3_2G010530 Cucumis sativus L. HOM05D004200 ORTHO05D004996 2.7e-07 58.9 41 75.6
Sed0018905 Sechium edule HOM05D004200 ORTHO05D004996 2.7e-07 58.9 41 75.6
TWI36G1378 Tripterygium wilfordii HOM05D004200 ORTHO05D004996 2.7e-07 58.9 39 82.1
Cfa006248 Carpinus fangiana HOM05D004200 ORTHO05D004996 3.6e-07 58.5 39 82.1
CiPaw.07G082000 Carya illinoinensis HOM05D004200 ORTHO05D004996 3.6e-07 58.5 39 82.1
Haze_04586 Corylus avellana HOM05D004200 ORTHO05D004996 3.6e-07 58.5 39 82.1
Thhalv10013707m.g Eutrema salsugineum HOM05D004200 ORTHO05D004996 3.6e-07 58.5 41 75.6
Sp6g26780 Schrenkiella parvula HOM05D004200 ORTHO05D004996 3.6e-07 58.5 41 75.6
Hund21914 Selenicereus undatus HOM05D004200 ORTHO05D004996 3.6e-07 58.5 37 86.5
HPP92_004648 Vanilla planifolia HOM05D004200 ORTHO05D004996 3.6e-07 58.5 43 72.1
Zm00001eb064140 Zea mays HOM05D004200 ORTHO05D004996 3.6e-07 58.5 37 86.5
Lsat_1_v5_gn_0_14781 Lactuca sativa HOM05D004200 ORTHO05D004996 4.7e-07 58.2 34 91.2
Rhsim09G0129000 Rhododendron simsii HOM05D004200 ORTHO05D004996 4.7e-07 58.2 34 91.2
BcaB08g36770 Brassica carinata HOM05D004200 ORTHO05D004996 6.1e-07 57.8 41 75.6
BcaC03g13520 Brassica carinata HOM05D004200 ORTHO05D004996 6.1e-07 57.8 41 75.6
BcaC04g18792 Brassica carinata HOM05D004200 ORTHO05D004996 6.1e-07 57.8 41 75.6
A02p04200 Brassica napus HOM05D004200 ORTHO05D004996 6.1e-07 57.8 41 75.6
A10p21960 Brassica napus HOM05D004200 ORTHO05D004996 6.1e-07 57.8 41 75.6
C02p09080 Brassica napus HOM05D004200 ORTHO05D004996 6.1e-07 57.8 41 75.6
C09p59710 Brassica napus HOM05D004200 ORTHO05D004996 6.1e-07 57.8 41 75.6
BolC2t06818H Brassica oleracea HOM05D004200 ORTHO05D004996 6.1e-07 57.8 41 75.6
BolC9t58809H Brassica oleracea HOM05D004200 ORTHO05D004996 6.1e-07 57.8 41 75.6
BraA02t05383Z Brassica rapa HOM05D004200 ORTHO05D004996 6.1e-07 57.8 41 75.6
BraA10t44254Z Brassica rapa HOM05D004200 ORTHO05D004996 6.1e-07 57.8 41 75.6
Carub.0006s1566 Capsella rubella HOM05D004200 ORTHO05D004996 6.1e-07 57.8 41 75.6
AUR62000293 Chenopodium quinoa HOM05D004200 ORTHO05D004996 6.1e-07 57.8 37 83.8
AUR62006639 Chenopodium quinoa HOM05D004200 ORTHO05D004996 6.1e-07 57.8 37 83.8
ClCG11G009760 Citrullus lanatus HOM05D004200 ORTHO05D004996 6.1e-07 57.8 41 73.2
ECA232G1350 Erigeron canadensis HOM05D004200 ORTHO05D004996 6.1e-07 57.8 36 86.1
Peaxi162Scf00353g00751 Petunia axillaris HOM05D004200 ORTHO05D004996 6.1e-07 57.8 33 93.9
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 6.1e-07 57.8 34 91.2
Hund07362 Selenicereus undatus HOM05D004200 ORTHO05D004996 8.0e-07 57.4 37 83.8
CARHR195770 Cardamine hirsuta HOM05D004200 ORTHO05D004996 1.0e-06 57.0 37 83.8
HanXRQChr04g0101101 Helianthus annuus HOM05D004200 ORTHO05D004996 1.0e-06 57.0 34 88.2
HanXRQChr15g0492211 Helianthus annuus HOM05D004200 ORTHO05D004996 1.0e-06 57.0 34 88.2
Os03g0843500 Oryza sativa ssp. japonica HOM05D004200 ORTHO05D004996 1.0e-06 57.0 39 74.4
PSO675G0506 Papaver somniferum HOM05D004200 ORTHO05D004996 1.0e-06 57.0 37 86.5
Zm00001eb210930 Zea mays HOM05D004200 ORTHO05D004996 1.0e-06 57.0 39 79.5
BcaB01g05204 Brassica carinata HOM05D004200 ORTHO05D004996 1.4e-06 56.6 41 75.6
Lalb_Chr03g0038051 Lupinus albus HOM05D004200 ORTHO05D004996 1.4e-06 56.6 39 79.5
unitig_26.g9576 Utricularia gibba HOM05D004200 ORTHO05D004996 2.3e-06 55.8 41 73.2
ATR0743G001 Amborella trichopoda HOM05D004200 ORTHO05D004996 3.0e-06 55.5 41 73.2
C03p09760 Brassica napus HOM05D004200 ORTHO05D004996 3.0e-06 55.5 36 83.3
CDE04G0807 Ceratophyllum demersum HOM05D004200 ORTHO05D004996 3.0e-06 55.5 39 79.5
CDE07G0335 Ceratophyllum demersum HOM05D004200 ORTHO05D004996 3.0e-06 55.5 39 79.5
arahy.Tifrunner.gnm1.ann1.A3L5K6 Arachis hypogaea HOM05D004200 ORTHO05D082539 4.0e-06 55.1 37 89.2
BolC3t13465H Brassica oleracea HOM05D004200 ORTHO05D004996 4.0e-06 55.1 41 73.2
arahy.Tifrunner.gnm1.ann1.D9AMXU Arachis hypogaea HOM05D004200 ORTHO05D004996 5.2e-06 54.7 29 100.0
Ah.04g159100 Amaranthus hybridus HOM05D004200 ORTHO05D004996 6.7e-06 54.3 39 71.8
SEGI_02846 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 6.7e-06 54.3 42 69.0
SEGI_21671 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 6.7e-06 54.3 42 69.0
Zm00001eb246650 Zea mays HOM05D004200 ORTHO05D004996 6.7e-06 54.3 43 67.4
Lj1g0022981 Lotus japonicus HOM05D004200 ORTHO05D004996 8.8e-06 53.9 41 68.3
SMO174G0194 Selaginella moellendorffii HOM05D004200 ORTHO05D004996 8.8e-06 53.9 37 83.8


User provided reference genes

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