Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 1.9e-158 562.4 273 100.0
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 3.1e-156 555.1 273 98.5
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 3.4e-123 445.3 260 83.5
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 5.7e-118 427.9 260 79.6
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 5.7e-118 427.9 260 79.6
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 1.7e-117 426.4 262 77.5
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 3.7e-117 425.2 260 78.1
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 1.1e-116 423.7 267 77.5
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 7.7e-115 417.5 261 77.0
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 3.8e-114 415.2 259 77.6
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 6.5e-114 414.5 260 77.7
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 8.0e-104 380.9 261 68.6
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 5.2e-103 378.3 267 67.8
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 3.3e-102 375.6 260 68.5
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 1.3e-101 373.6 260 65.8
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 1.1e-100 370.5 260 70.0
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 1.1e-100 370.5 258 68.2
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 1.4e-100 370.2 260 67.3
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 2.4e-100 369.4 251 70.9
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 5.3e-100 368.2 259 67.6
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 9.1e-100 367.5 258 67.1
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 1.2e-99 367.1 265 66.0
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 1.7e-98 363.2 267 67.0
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 1.7e-98 363.2 258 67.1
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 2.9e-98 362.5 258 66.7
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 1.1e-97 360.5 265 63.8
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 5.5e-97 358.2 257 65.8
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 1.2e-96 357.1 260 65.4
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 3.6e-96 355.5 260 64.6
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 4.7e-96 355.1 258 65.1
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 8.0e-96 354.4 264 68.2
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 8.0e-96 354.4 258 64.0
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 1.0e-95 354.0 261 66.7
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 1.4e-95 353.6 265 63.4
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 1.4e-95 353.6 257 65.0
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 2.3e-95 352.8 258 64.0
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 5.2e-95 351.7 280 61.4
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 8.8e-95 350.9 260 64.2
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 2.6e-94 349.4 250 68.4
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 3.3e-94 349.0 279 61.6
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 7.5e-94 347.8 280 60.7
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 1.3e-93 347.1 260 63.1
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 1.7e-93 346.7 260 63.5
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 3.7e-93 345.5 260 65.4
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 4.8e-93 345.1 260 62.7
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 8.3e-93 344.4 262 62.6
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 1.8e-92 343.2 265 63.0
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 3.1e-92 342.4 258 62.8
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 4.1e-92 342.0 271 62.0
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 2.0e-91 339.7 256 64.1
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 2.0e-91 339.7 249 66.3
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 4.5e-91 338.6 247 65.2
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 1.0e-90 337.4 260 61.2
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 2.2e-90 336.3 283 59.7
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.1e-89 334.0 253 62.5
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 7.2e-89 331.3 242 64.0
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 7.2e-89 331.3 265 60.8
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 9.4e-89 330.9 257 61.5
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.6e-88 330.1 249 63.1
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 3.6e-88 328.9 254 63.8
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 1.0e-87 327.4 237 64.1
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 1.0e-87 327.4 260 61.2
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 1.8e-87 326.6 293 55.6
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 7.5e-86 321.2 244 63.1
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 2.8e-85 319.3 258 58.9
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 3.3e-81 305.8 218 69.7
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 3.6e-80 302.4 363 50.4
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 3.4e-78 295.8 254 58.7
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 1.7e-77 293.5 257 57.6
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 4.9e-77 292.0 262 56.9
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 1.1e-76 290.8 217 66.8
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 7.0e-76 288.1 230 59.6
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 4.7e-72 275.4 221 63.3
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 1.3e-69 267.3 209 62.2
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 1.2e-67 260.8 258 51.9
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 1.2e-64 250.8 279 51.3
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 4.7e-64 248.8 249 51.8
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 1.1e-63 247.7 202 59.4
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 8.9e-63 244.6 167 66.5
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 2.6e-62 243.0 258 50.4
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 5.8e-62 241.9 276 48.6
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 1.2e-59 234.2 186 58.6
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 1.2e-51 207.6 261 45.6
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 1.6e-48 197.2 267 43.1
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 6.2e-48 195.3 186 53.8
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 6.4e-45 185.3 266 42.1
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 1.2e-27 127.9 119 56.3
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 1.2e-27 127.9 123 60.2
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 3.1e-23 113.2 156 42.9
Hma1.2p1_0785F.1_g217410 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 2.6e-22 110.2 71 67.6
Glyma.19G060100 Glycine max HOM05D007625 ORTHO05D009738 2.1e-19 100.5 82 63.4
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 1.1e-17 94.7 90 56.7
Aqoxy2G02999 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 1.1e-15 88.2 68 60.3
MD16G1169600 Malus domestica HOM05D007625 ORTHO05D009738 8.4e-13 78.6 105 42.9
AL6G33900 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 9.3e-12 75.1 220 27.7
BcaC03g13917 Brassica carinata HOM05D001816 ORTHO05D002001 1.0e-10 71.6 221 29.9
C02p11280 Brassica napus HOM05D001816 ORTHO05D002001 1.0e-10 71.6 221 29.9
Carub.0006s2052 Capsella rubella HOM05D001816 ORTHO05D002001 1.0e-10 71.6 220 28.2
Manes.04G068300 Manihot esculenta HOM05D001816 ORTHO05D002001 1.0e-10 71.6 221 28.1
AT5G22800 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 1.3e-10 71.2 220 27.7
BolC2t07196H Brassica oleracea HOM05D001816 ORTHO05D002001 1.3e-10 71.2 221 29.9
BcaB05g22693 Brassica carinata HOM05D001816 ORTHO05D002001 1.8e-10 70.9 221 28.1
BNapus_Darmor_BZH_scaffold_38p00390 Brassica napus HOM05D001816 ORTHO05D002001 1.8e-10 70.9 221 29.4
CARHR190770 Cardamine hirsuta HOM05D001816 ORTHO05D002001 1.8e-10 70.9 220 27.7
Cfa005345 Carpinus fangiana HOM05D001816 ORTHO05D002001 2.3e-10 70.5 245 27.3
MELO3C013645.2 Cucumis melo HOM05D001816 ORTHO05D002001 2.3e-10 70.5 222 30.6
Lalb_Chr08g0246781 Lupinus albus HOM05D001816 ORTHO05D002001 2.3e-10 70.5 223 26.5
BraA02t05688Z Brassica rapa HOM05D001816 ORTHO05D002001 3.0e-10 70.1 221 29.4
COL.COLO4_17969 Corchorus olitorius HOM05D001816 ORTHO05D002001 3.0e-10 70.1 230 29.1
Mapoly0065s0015 Marchantia polymorpha HOM05D001816 ORTHO05D002001 3.0e-10 70.1 223 26.9
Pp3c2_4380 Physcomitrium patens HOM05D001816 ORTHO05D002001 3.0e-10 70.1 244 28.7
PGR142G1779 Punica granatum HOM05D001816 ORTHO05D002001 3.0e-10 70.1 221 29.9
CiPaw.05G091200 Carya illinoinensis HOM05D001816 ORTHO05D002001 3.9e-10 69.7 222 30.2
Thecc.02G050000 Theobroma cacao HOM05D001816 ORTHO05D002001 3.9e-10 69.7 230 28.7
Sp6g22620 Schrenkiella parvula HOM05D001816 ORTHO05D002001 5.1e-10 69.3 224 28.6
Thhalv10012575m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 6.7e-10 68.9 221 28.1
Haze_02022 Corylus avellana HOM05D001816 ORTHO05D002001 8.7e-10 68.6 245 26.9
ClCG02G010990 Citrullus lanatus HOM05D001816 ORTHO05D002001 1.5e-09 67.8 221 29.4
Duzib132G0368 Durio zibethinus HOM05D001816 ORTHO05D002001 1.5e-09 67.8 230 27.8
Gohir.A03G208200 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.5e-09 67.8 230 27.4
Lj9C403T6 Lonicera japonica HOM05D001816 ORTHO05D002001 1.5e-09 67.8 215 26.5
Ah.01g023480 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.9e-09 67.4 222 27.5
ATR0712G016 Amborella trichopoda HOM05D001816 ORTHO05D002001 1.9e-09 67.4 222 27.9
arahy.Tifrunner.gnm1.ann1.X97WXI Arachis hypogaea HOM05D001816 ORTHO05D002001 1.9e-09 67.4 215 27.9
CsaV3_6G012710 Cucumis sativus L. HOM05D001816 ORTHO05D002001 1.9e-09 67.4 221 29.4
SGA_v2.0_scaffold32G13329 Striga asiatica HOM05D001816 ORTHO05D002001 1.9e-09 67.4 221 28.1
arahy.Tifrunner.gnm1.ann1.1BU1FJ Arachis hypogaea HOM05D001816 ORTHO05D002001 2.5e-09 67.0 215 27.9
EL10Ac9g21289 Beta vulgaris HOM05D001816 ORTHO05D002001 2.5e-09 67.0 223 28.7
Aa31LG2G15270 Aethionema arabicum HOM05D001816 ORTHO05D002001 3.3e-09 66.6 221 28.1
DCAR_022835 Daucus carota HOM05D001816 ORTHO05D002001 3.3e-09 66.6 220 25.9
Phvul.007G142900 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 3.3e-09 66.6 214 26.6
VMungo1309G1075 Vigna mungo HOM05D001816 ORTHO05D002001 3.3e-09 66.6 215 28.4
Atru.chr5.3488 Acer truncatum HOM05D001816 ORTHO05D002001 5.7e-09 65.9 221 27.6
Ciclev10030103m.g Citrus clementina HOM05D001816 ORTHO05D002001 5.7e-09 65.9 224 27.2
Gohir.D02G229700 Gossypium hirsutum HOM05D001816 ORTHO05D002001 7.4e-09 65.5 230 27.4
Nn6g31779 Nelumbo nucifera HOM05D001816 ORTHO05D002001 7.4e-09 65.5 223 27.8
Actinidia20551 Actinidia chinensis HOM05D001816 ORTHO05D002001 9.7e-09 65.1 222 28.4
Gorai.005G257400 Gossypium raimondii HOM05D001816 ORTHO05D002001 9.7e-09 65.1 230 27.4
AUR62009961 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.3e-08 64.7 221 28.5
Prupe.8G174300 Prunus persica HOM05D001816 ORTHO05D002001 1.3e-08 64.7 221 27.1
TPR.G38581 Trifolium pratense HOM05D001816 ORTHO05D002001 1.3e-08 64.7 214 26.2
TWI31G0479 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 1.3e-08 64.7 221 27.1
FvH4_2g16070 Fragaria vesca HOM05D001816 ORTHO05D002001 1.6e-08 64.3 220 26.4
FAN15G3397 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.6e-08 64.3 220 26.8
FAN24G0316 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.6e-08 64.3 220 26.4
FAN27G0881 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.6e-08 64.3 220 26.4
Sed0019949 Sechium edule HOM05D001816 ORTHO05D002001 1.6e-08 64.3 221 28.5
THA.LOC104807386 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 1.6e-08 64.3 222 30.2
Glyma.04G001600 Glycine max HOM05D001816 ORTHO05D002001 2.2e-08 63.9 214 26.2
MCO11G803 Micromonas commoda HOM05D001816 ORTHO05D002001 2.2e-08 63.9 216 26.9
Phvul.009G116900 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 2.2e-08 63.9 215 27.4
Sabra09G0109800 Salix brachista HOM05D001816 ORTHO05D002001 2.2e-08 63.9 221 27.1
GSVIVG01023918001 Vitis vinifera HOM05D001816 ORTHO05D002001 2.2e-08 63.9 221 27.1
Medtr3g118360 Medicago truncatula HOM05D001816 ORTHO05D002001 2.8e-08 63.5 214 27.1
AUR62012953 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.7e-08 63.2 221 28.1
Eucgr.I01492 Eucalyptus grandis HOM05D001816 ORTHO05D002001 3.7e-08 63.2 221 27.1
SalBow1G5513 Salvia bowleyana HOM05D001816 ORTHO05D002001 3.7e-08 63.2 245 27.3
Zm00001eb371640 Zea mays HOM05D001816 ORTHO05D002001 3.7e-08 63.2 216 27.8
MD10G1133000 Malus domestica HOM05D001816 ORTHO05D002001 4.8e-08 62.8 220 25.9
CSS0006826 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 6.3e-08 62.4 221 27.6
Dinv41898 Davidia involucrata HOM05D001816 ORTHO05D002001 6.3e-08 62.4 221 27.6
Potri.009G141300 Populus trichocarpa HOM05D001816 ORTHO05D002001 6.3e-08 62.4 222 28.4
QL11p055386 Quercus lobata HOM05D001816 ORTHO05D002001 6.3e-08 62.4 221 26.7
RcHm_v2.0_Chr6g0279751 Rosa chinensis HOM05D001816 ORTHO05D002001 6.3e-08 62.4 221 27.1
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 6.3e-08 62.4 275 26.5
FAN20G1974 Fragaria x ananassa HOM05D001816 ORTHO05D002001 8.2e-08 62.0 219 26.9
PRCOL_00002617 Prasinoderma coloniale HOM05D001816 ORTHO05D002001 8.2e-08 62.0 221 28.5
CANSAT25G0387 Cannabis sativa HOM05D001816 ORTHO05D002001 1.4e-07 61.2 223 26.9
Glyma.06G001100 Glycine max HOM05D001816 ORTHO05D002001 1.4e-07 61.2 217 28.1
TAR628G0285 Trochodendron aralioides HOM05D001816 ORTHO05D002001 1.4e-07 61.2 221 26.2
Ca_15279_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 2.4e-07 60.5 214 25.7
PSO170G2372 Papaver somniferum HOM05D001816 ORTHO05D002001 3.1e-07 60.1 221 27.1
Lj1g0012910 Lotus japonicus HOM05D001816 ORTHO05D002001 5.3e-07 59.3 215 26.0
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 6.9e-07 58.9 246 27.6
CDE05G1766 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 9.0e-07 58.5 218 28.4
Cc09_g10520 Coffea canephora HOM05D001816 ORTHO05D002001 9.0e-07 58.5 215 26.5
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 9.0e-07 58.5 246 27.2
Solyc01g111990.3 Solanum lycopersicum HOM05D001816 ORTHO05D002001 9.0e-07 58.5 219 25.6
Sopen01g054040 Solanum pennellii HOM05D001816 ORTHO05D002001 9.0e-07 58.5 219 25.6
vmacro17274 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 9.0e-07 58.5 216 27.8
Pp3s155_80 Physcomitrium patens HOM05D001816 ORTHO05D034380 1.5e-06 57.8 258 23.3
Rhsim05G0050000 Rhododendron simsii HOM05D001816 ORTHO05D002001 2.6e-06 57.0 217 26.3
HanXRQChr17g0559451 Helianthus annuus HOM05D001816 ORTHO05D002001 4.5e-06 56.2 215 25.1
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 7.7e-06 55.5 250 27.2
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 1.0e-05 55.1 244 25.8


User provided reference genes

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