Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QIA7HV Arachis hypogaea HOM05D000068 ORTHO05D026885 5.9e-36 153.7 78 100.0
Hund13220 Selenicereus undatus HOM05D000068 ORTHO05D000084 1.5e-23 112.5 92 67.4
Sc10g0003700 Simmondsia chinensis HOM05D000068 ORTHO05D000084 1.5e-23 112.5 92 67.4
arahy.Tifrunner.gnm1.ann1.6J7SPU Arachis hypogaea HOM05D000068 ORTHO05D000084 2.0e-23 112.1 92 68.5
arahy.Tifrunner.gnm1.ann1.WT01JD Arachis hypogaea HOM05D000068 ORTHO05D000084 2.0e-23 112.1 92 68.5
Medtr6g011680 Medicago truncatula HOM05D000068 ORTHO05D000084 2.0e-23 112.1 92 68.5
THA.LOC104823199 Tarenaya hassleriana HOM05D000068 ORTHO05D000084 2.0e-23 112.1 92 66.3
THA.LOC104805459 Tarenaya hassleriana HOM05D000068 ORTHO05D000084 2.6e-23 111.7 92 67.4
EL10Ac2g02969 Beta vulgaris HOM05D000068 ORTHO05D000084 3.4e-23 111.3 92 66.3
AUR62034389 Chenopodium quinoa HOM05D000068 ORTHO05D000084 3.4e-23 111.3 92 67.4
PGR083G0283 Punica granatum HOM05D000068 ORTHO05D000084 3.4e-23 111.3 92 67.4
Ca_04275_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 4.4e-23 110.9 92 67.4
AUR62039825 Chenopodium quinoa HOM05D000068 ORTHO05D000084 5.7e-23 110.5 92 66.3
Ah.10g031360 Amaranthus hybridus HOM05D000068 ORTHO05D000084 7.5e-23 110.2 92 65.2
Dinv06531 Davidia involucrata HOM05D000068 ORTHO05D000084 9.8e-23 109.8 92 67.4
Eucgr.J01214 Eucalyptus grandis HOM05D000068 ORTHO05D000084 9.8e-23 109.8 92 67.4
Manes.17G024294 Manihot esculenta HOM05D000068 ORTHO05D000084 9.8e-23 109.8 92 67.4
Psat1g074600 Pisum sativum HOM05D000068 ORTHO05D000084 9.8e-23 109.8 92 67.4
Potri.017G081100 Populus trichocarpa HOM05D000068 ORTHO05D000084 9.8e-23 109.8 92 67.4
Sabra17G0072400 Salix brachista HOM05D000068 ORTHO05D000084 9.8e-23 109.8 92 67.4
Cpa.g.sc14.14 Carica papaya HOM05D000068 ORTHO05D000084 1.3e-22 109.4 92 65.2
Glyma.13G063700 Glycine max HOM05D000068 ORTHO05D000084 1.3e-22 109.4 92 66.3
Phvul.004G027800 Phaseolus vulgaris HOM05D000068 ORTHO05D000084 1.3e-22 109.4 92 66.3
VMungo0464G1138 Vigna mungo HOM05D000068 ORTHO05D000084 1.3e-22 109.4 92 66.3
Atru.chr8.133 Acer truncatum HOM05D000068 ORTHO05D000084 1.7e-22 109.0 92 66.3
Atru.chr8.207 Acer truncatum HOM05D000068 ORTHO05D000084 1.7e-22 109.0 92 66.3
TPR.G10366 Trifolium pratense HOM05D000068 ORTHO05D000084 1.7e-22 109.0 99 63.6
CiPaw.03G028400 Carya illinoinensis HOM05D000068 ORTHO05D000084 2.2e-22 108.6 92 66.3
Cfa007533 Carpinus fangiana HOM05D000068 ORTHO05D000084 4.9e-22 107.5 92 65.2
Haze_14554 Corylus avellana HOM05D000068 ORTHO05D000084 4.9e-22 107.5 92 65.2
Lalb_Chr02g0159651 Lupinus albus HOM05D000068 ORTHO05D000084 4.9e-22 107.5 92 65.2
Actinidia36020 Actinidia chinensis HOM05D000068 ORTHO05D000084 6.3e-22 107.1 92 65.2
DCAR_011141 Daucus carota HOM05D000068 ORTHO05D000084 6.3e-22 107.1 92 65.2
Glyma.19G021500 Glycine max HOM05D000068 ORTHO05D000084 6.3e-22 107.1 92 65.2
Lj7A396T69 Lonicera japonica HOM05D000068 ORTHO05D000084 6.3e-22 107.1 92 65.2
Manes.15G177400 Manihot esculenta HOM05D000068 ORTHO05D000084 6.3e-22 107.1 92 66.3
A09p03820 Brassica napus HOM05D000068 ORTHO05D000084 8.3e-22 106.7 92 63.0
BraA09t36020Z Brassica rapa HOM05D000068 ORTHO05D000084 8.3e-22 106.7 92 63.0
Hma1.2p1_0489F.1_g164010 Hydrangea macrophylla HOM05D000068 ORTHO05D000084 8.3e-22 106.7 92 65.2
BcaB04g19487 Brassica carinata HOM05D000068 ORTHO05D000084 1.1e-21 106.3 92 62.0
BcaC04g23860 Brassica carinata HOM05D000068 ORTHO05D000084 1.1e-21 106.3 92 62.0
C09p04050 Brassica napus HOM05D000068 ORTHO05D000084 1.1e-21 106.3 92 62.0
BolC9t53335H Brassica oleracea HOM05D000068 ORTHO05D000084 1.1e-21 106.3 92 62.0
Actinidia06082 Actinidia chinensis HOM05D000068 ORTHO05D000084 1.4e-21 105.9 92 65.2
CSS0003241 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 1.4e-21 105.9 92 65.2
CSS0040546 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 1.4e-21 105.9 92 65.2
Nitab4.5_0000564g0140 Nicotiana tabacum HOM05D000068 ORTHO05D000084 1.4e-21 105.9 92 65.2
Nitab4.5_0006318g0030 Nicotiana tabacum HOM05D000068 ORTHO05D000084 1.4e-21 105.9 92 65.2
QL02p081508 Quercus lobata HOM05D000068 ORTHO05D000084 1.4e-21 105.9 92 65.2
BcaC06g30890 Brassica carinata HOM05D000068 ORTHO05D000084 1.8e-21 105.5 92 62.0
BcaC06g33648 Brassica carinata HOM05D000068 ORTHO05D000084 1.8e-21 105.5 92 62.0
A06p40290 Brassica napus HOM05D000068 ORTHO05D000084 1.8e-21 105.5 92 62.0
C07p37780 Brassica napus HOM05D000068 ORTHO05D000084 1.8e-21 105.5 92 62.0
BolC7t44296H Brassica oleracea HOM05D000068 ORTHO05D000084 1.8e-21 105.5 92 62.0
BraA06t26947Z Brassica rapa HOM05D000068 ORTHO05D000084 1.8e-21 105.5 92 62.0
Hund15620 Selenicereus undatus HOM05D000068 ORTHO05D000084 1.8e-21 105.5 92 62.0
THA.LOC104823913 Tarenaya hassleriana HOM05D000068 ORTHO05D000084 1.8e-21 105.5 92 63.0
MSTRG.15479 Avicennia marina HOM05D000068 ORTHO05D000084 2.4e-21 105.1 92 64.1
ClCG09G018320 Citrullus lanatus HOM05D000068 ORTHO05D000084 2.4e-21 105.1 92 63.0
MELO3C021982.2 Cucumis melo HOM05D000068 ORTHO05D000084 2.4e-21 105.1 92 63.0
CsaV3_5G037960 Cucumis sativus L. HOM05D000068 ORTHO05D000084 2.4e-21 105.1 92 63.0
COL.COLO4_04791 Corchorus olitorius HOM05D000068 ORTHO05D000084 3.1e-21 104.8 92 64.1
Lj2g0025427 Lotus japonicus HOM05D000068 ORTHO05D000084 3.1e-21 104.8 92 62.0
Oeu027780.1 Olea europaea HOM05D000068 ORTHO05D000084 3.1e-21 104.8 92 64.1
Oeu050217.1 Olea europaea HOM05D000068 ORTHO05D000084 3.1e-21 104.8 92 64.1
Rhsim10G0040500 Rhododendron simsii HOM05D000068 ORTHO05D000084 4.1e-21 104.4 92 64.1
Aa31LG2G4350 Aethionema arabicum HOM05D000068 ORTHO05D000084 5.4e-21 104.0 92 60.9
Duzib264G0420 Durio zibethinus HOM05D000068 ORTHO05D000084 5.4e-21 104.0 92 63.0
Thecc.04G079200 Theobroma cacao HOM05D000068 ORTHO05D000084 5.4e-21 104.0 92 63.0
Ciclev10010931m.g Citrus clementina HOM05D000068 ORTHO05D000084 7.0e-21 103.6 92 64.1
Cc07_g03250 Coffea canephora HOM05D000068 ORTHO05D000084 7.0e-21 103.6 92 63.0
ECA232G4238 Erigeron canadensis HOM05D000068 ORTHO05D000084 7.0e-21 103.6 92 62.0
Thhalv10003528m.g Eutrema salsugineum HOM05D000068 ORTHO05D000084 7.0e-21 103.6 92 63.0
HanXRQChr15g0487851 Helianthus annuus HOM05D000068 ORTHO05D000084 7.0e-21 103.6 92 63.0
Prupe.3G269400 Prunus persica HOM05D000068 ORTHO05D000084 7.0e-21 103.6 92 63.0
AL5G18630 Arabidopsis lyrata HOM05D000068 ORTHO05D000084 9.1e-21 103.2 92 62.0
AT3G28860 Arabidopsis thaliana HOM05D000068 ORTHO05D000084 9.1e-21 103.2 92 62.0
CARHR151870 Cardamine hirsuta HOM05D000068 ORTHO05D000084 9.1e-21 103.2 92 62.0
Gohir.A09G019000 Gossypium hirsutum HOM05D000068 ORTHO05D000084 9.1e-21 103.2 92 63.0
Gohir.D07G221700 Gossypium hirsutum HOM05D000068 ORTHO05D000084 9.1e-21 103.2 92 63.0
Gohir.D09G018400 Gossypium hirsutum HOM05D000068 ORTHO05D000084 9.1e-21 103.2 92 63.0
Gorai.006G021600 Gossypium raimondii HOM05D000068 ORTHO05D000084 9.1e-21 103.2 92 63.0
Sp2g17490 Schrenkiella parvula HOM05D000068 ORTHO05D000084 9.1e-21 103.2 92 62.0
Duzib147G0145 Durio zibethinus HOM05D000068 ORTHO05D000084 1.2e-20 102.8 92 62.0
HanXRQChr09g0265281 Helianthus annuus HOM05D000068 ORTHO05D000084 1.2e-20 102.8 92 60.9
Lsat_1_v5_gn_4_178061 Lactuca sativa HOM05D000068 ORTHO05D000084 1.2e-20 102.8 92 62.0
Lalb_Chr21g0318871 Lupinus albus HOM05D000068 ORTHO05D000084 1.2e-20 102.8 92 59.8
Nn3g17178 Nelumbo nucifera HOM05D000068 ORTHO05D000084 1.2e-20 102.8 92 62.0
PGSC0003DMG400001419 Solanum tuberosum HOM05D000068 ORTHO05D000084 1.2e-20 102.8 92 63.0
TWI32G1037 Tripterygium wilfordii HOM05D000068 ORTHO05D000084 1.2e-20 102.8 92 62.0
vmacro05707 Vaccinium macrocarpon HOM05D000068 ORTHO05D000084 1.2e-20 102.8 92 63.0
FAN02G4098 Fragaria x ananassa HOM05D000068 ORTHO05D000084 1.6e-20 102.4 92 60.9
RcHm_v2.0_Chr2g0168761 Rosa chinensis HOM05D000068 ORTHO05D000084 1.6e-20 102.4 92 62.0
SalBow1G2626 Salvia bowleyana HOM05D000068 ORTHO05D000084 1.6e-20 102.4 92 63.0
Solyc02g087870.3 Solanum lycopersicum HOM05D000068 ORTHO05D000084 1.6e-20 102.4 92 63.0
Sopen02g032590 Solanum pennellii HOM05D000068 ORTHO05D000084 1.6e-20 102.4 92 63.0
FvH4_6g48960 Fragaria vesca HOM05D000068 ORTHO05D000084 2.0e-20 102.1 92 60.9
FAN05G0634 Fragaria x ananassa HOM05D000068 ORTHO05D000084 2.0e-20 102.1 92 60.9
Lju41A19T29 Lonicera japonica HOM05D000068 ORTHO05D000084 2.0e-20 102.1 92 62.0
Sed0012935 Sechium edule HOM05D000068 ORTHO05D000084 2.0e-20 102.1 92 60.9
HanXRQChr14g0449861 Helianthus annuus HOM05D000068 ORTHO05D000084 2.7e-20 101.7 92 63.0
Gohir.A07G214800 Gossypium hirsutum HOM05D000068 ORTHO05D000084 3.5e-20 101.3 92 62.0
Gorai.001G256100 Gossypium raimondii HOM05D000068 ORTHO05D000084 3.5e-20 101.3 92 62.0
TWI60G0158 Tripterygium wilfordii HOM05D000068 ORTHO05D000084 3.5e-20 101.3 92 60.9
Peaxi162Scf00129g00314 Petunia axillaris HOM05D000068 ORTHO05D000084 4.5e-20 100.9 92 60.9
TAR622G0587 Trochodendron aralioides HOM05D000068 ORTHO05D000084 4.5e-20 100.9 92 62.0
ECA238G1368 Erigeron canadensis HOM05D000068 ORTHO05D000084 7.7e-20 100.1 92 62.0
Migut.H00909 Erythranthe guttata HOM05D000068 ORTHO05D000084 7.7e-20 100.1 92 60.9
Sed0000686 Sechium edule HOM05D000068 ORTHO05D000084 7.7e-20 100.1 92 58.7
MBI05_g00386_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D000084 1.0e-19 99.8 92 60.9
FAN09G2019 Fragaria x ananassa HOM05D000068 ORTHO05D000084 1.3e-19 99.4 92 59.8
MBI02_g27153_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D000084 1.7e-19 99.0 92 59.8
MBI02_g36695_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D000084 1.7e-19 99.0 92 59.8
unitig_736.g22227 Utricularia gibba HOM05D000068 ORTHO05D000084 2.3e-19 98.6 92 60.9
Lsat_1_v5_gn_2_89101 Lactuca sativa HOM05D000068 ORTHO05D000084 3.8e-19 97.8 92 60.9
MD09G1049400 Malus domestica HOM05D000068 ORTHO05D000084 3.8e-19 97.8 92 57.6
Aqoxy3G03333_Aqoxy3G03334 Aquilegia oxysepala HOM05D000068 ORTHO05D000084 5.0e-19 97.4 92 57.6
MD17G1049600 Malus domestica HOM05D000068 ORTHO05D000084 6.6e-19 97.1 92 57.6
PSO017G5503 Papaver somniferum HOM05D000068 ORTHO05D000084 6.6e-19 97.1 92 58.7
PSO478G0615 Papaver somniferum HOM05D000068 ORTHO05D000084 6.6e-19 97.1 92 58.7
CDE07G1282 Ceratophyllum demersum HOM05D000068 ORTHO05D000084 1.1e-18 96.3 92 56.5
SalBow1G1281 Salvia bowleyana HOM05D000068 ORTHO05D000084 1.1e-18 96.3 92 58.7
SalBow1G1374 Salvia bowleyana HOM05D000068 ORTHO05D000084 1.1e-18 96.3 92 58.7
CDE04G0183 Ceratophyllum demersum HOM05D000068 ORTHO05D000084 1.9e-18 95.5 92 56.5
CAN.G206.141 Capsicum annuum HOM05D000068 ORTHO05D000084 2.5e-18 95.1 92 59.8
HPP92_004321 Vanilla planifolia HOM05D000068 ORTHO05D000084 3.3e-18 94.7 92 56.5
Zm00001eb424060 Zea mays HOM05D000068 ORTHO05D000084 3.3e-18 94.7 92 56.5
Aqoxy3G00699 Aquilegia oxysepala HOM05D000068 ORTHO05D000084 4.2e-18 94.4 92 57.6
SHI06820 Sapria himalayana HOM05D000068 ORTHO05D000084 4.2e-18 94.4 92 57.6
Os04g0459000 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D000084 5.5e-18 94.0 92 56.5
PSO063G3353 Papaver somniferum HOM05D000068 ORTHO05D000084 5.5e-18 94.0 92 58.7
unitig_899.g15515 Utricularia gibba HOM05D000068 ORTHO05D000084 5.5e-18 94.0 92 57.6
PSO832G1212 Papaver somniferum HOM05D000068 ORTHO05D000084 7.2e-18 93.6 92 57.6
MSTRG.3232 Avicennia marina HOM05D000068 ORTHO05D000084 9.5e-18 93.2 92 59.8
ATR0564G520 Amborella trichopoda HOM05D000068 ORTHO05D000084 1.2e-17 92.8 90 56.7
Medtr2g042310 Medicago truncatula HOM05D000068 ORTHO05D026885 6.1e-17 90.5 87 62.1
Rhsim10G0040700 Rhododendron simsii HOM05D000068 ORTHO05D000084 8.0e-17 90.1 92 53.3
Zm00001eb068880 Zea mays HOM05D000068 ORTHO05D000084 8.0e-17 90.1 92 56.5
vmacro05708 Vaccinium macrocarpon HOM05D000068 ORTHO05D000084 3.0e-16 88.2 92 53.3
Zm00001eb431930 Zea mays HOM05D000068 ORTHO05D000084 3.0e-16 88.2 92 54.3
HPP92_013071 Vanilla planifolia HOM05D000068 ORTHO05D000084 8.9e-16 86.7 92 53.3
vmacro05709 Vaccinium macrocarpon HOM05D000068 ORTHO05D000084 7.5e-15 83.6 92 50.0
Rhsim10G0040800 Rhododendron simsii HOM05D000068 ORTHO05D000084 1.7e-14 82.4 92 52.2
SEGI_19159 Sequoiadendron giganteum HOM05D000068 ORTHO05D000084 7.0e-13 77.0 92 47.8
HanXRQChr10g0289161 Helianthus annuus HOM05D000068 ORTHO05D026885 3.3e-10 68.2 81 50.6
GSVIVG01011381001 Vitis vinifera HOM05D000068 ORTHO05D000084 1.8e-08 62.4 60 58.3
Oeu061975.1 Olea europaea HOM05D000068 ORTHO05D000084 5.8e-07 57.4 90 30.0
Oeu060937.1 Olea europaea HOM05D000068 ORTHO05D000084 2.2e-06 55.5 66 48.5
Gohir.A07G217100 Gossypium hirsutum HOM05D000068 ORTHO05D000084 8.3e-06 53.5 90 33.3
Gohir.D07G224100 Gossypium hirsutum HOM05D000068 ORTHO05D000084 8.3e-06 53.5 90 33.3
Gorai.001G258500 Gossypium raimondii HOM05D000068 ORTHO05D000084 8.3e-06 53.5 90 33.3


User provided reference genes

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