Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 1.2e-241 840.1 710 100.0
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 3.7e-201 705.7 667 84.1
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 2.0e-175 620.2 657 81.0
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 2.2e-174 616.7 656 79.9
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 2.6e-170 603.2 656 84.1
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 2.6e-170 603.2 691 62.8
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 3.7e-169 599.4 668 78.7
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 2.0e-162 577.0 680 72.9
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 9.1e-160 568.2 686 72.4
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 9.2e-152 541.6 669 73.8
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 1.0e-147 528.1 685 72.8
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.4e-147 527.7 686 72.7
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 1.8e-147 527.3 684 74.1
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 3.4e-146 523.1 685 72.0
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 1.7e-145 520.8 656 73.9
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 4.1e-144 516.2 680 73.5
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 1.3e-142 511.1 680 72.5
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 1.9e-141 507.3 668 73.7
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 2.5e-141 506.9 699 69.0
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 5.6e-141 505.8 698 71.8
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 2.8e-140 503.4 680 72.2
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 4.0e-139 499.6 678 74.9
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 3.4e-138 496.5 684 74.0
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 2.9e-137 493.4 680 75.6
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 4.9e-137 492.7 676 70.7
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 1.1e-136 491.5 691 70.8
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 3.2e-136 490.0 676 70.6
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 2.7e-135 486.9 661 67.2
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 7.8e-135 485.3 701 68.6
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 1.0e-134 485.0 685 51.2
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 5.0e-134 482.6 676 70.9
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 1.9e-133 480.7 488 86.9
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 2.5e-133 480.3 683 64.1
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 5.6e-133 479.2 715 66.6
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 1.2e-132 478.0 690 70.4
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 3.6e-132 476.5 687 69.6
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 3.6e-132 476.5 686 72.3
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 6.2e-132 475.7 646 72.6
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 1.1e-131 474.9 661 71.0
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 2.3e-131 473.8 593 75.9
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 8.9e-131 471.9 766 55.9
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.2e-130 471.5 685 68.2
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 1.2e-130 471.5 676 71.0
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 3.7e-129 466.5 679 68.8
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 4.1e-128 463.0 682 70.8
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 2.1e-127 460.7 676 69.2
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.7e-127 460.3 676 68.8
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 6.6e-126 455.7 687 67.5
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 1.5e-125 454.5 699 67.5
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 3.3e-125 453.4 652 69.3
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 1.6e-124 451.1 713 66.5
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.1e-124 448.7 715 52.3
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 1.1e-123 448.4 696 68.8
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 5.8e-122 442.6 690 67.7
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 2.4e-120 437.2 678 67.8
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 7.8e-119 432.2 697 68.0
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 2.3e-118 430.6 681 65.3
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.9e-117 427.6 696 64.2
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 5.6e-117 426.0 679 65.1
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 1.2e-116 424.9 699 65.8
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 1.1e-115 421.8 695 66.6
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 2.4e-115 420.6 714 48.9
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.2e-114 418.3 675 70.5
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 2.6e-114 417.2 668 69.3
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 5.8e-114 416.0 675 66.5
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 4.2e-112 409.8 691 56.3
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 9.3e-112 408.7 828 43.1
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.0e-110 405.2 686 65.6
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.7e-110 404.4 709 57.3
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 2.3e-110 404.1 709 54.4
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 2.5e-109 400.6 687 65.5
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 3.6e-108 396.7 686 65.2
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 3.6e-108 396.7 662 66.6
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 8.1e-108 395.6 691 64.4
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 2.9e-105 387.1 705 69.1
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 3.8e-105 386.7 492 67.5
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 4.9e-105 386.3 672 40.9
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 1.9e-104 384.4 700 68.7
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 9.3e-104 382.1 670 62.8
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 6.0e-103 379.4 682 64.2
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 6.0e-103 379.4 490 76.7
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 5.1e-102 376.3 818 41.9
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 9.0e-99 365.5 662 65.1
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 2.0e-98 364.4 489 77.3
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 1.3e-97 361.7 489 77.3
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 3.8e-97 360.1 562 69.6
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 3.8e-97 360.1 403 57.6
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 1.4e-96 358.2 668 65.0
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 5.5e-96 356.3 487 77.2
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 7.1e-96 355.9 486 77.8
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 4.6e-95 353.2 483 77.4
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 1.0e-94 352.1 487 77.4
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 7.4e-93 345.9 665 66.8
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 1.6e-92 344.7 688 63.5
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 2.4e-91 340.9 689 62.3
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 4.0e-91 340.1 667 63.6
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 9.0e-91 339.0 678 55.8
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 1.3e-89 335.1 734 59.8
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 1.9e-85 321.2 669 61.9
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 1.3e-84 318.5 487 73.7
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 3.7e-84 317.0 672 61.3
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 4.5e-82 310.1 669 63.2
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 1.7e-81 308.1 672 62.4
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 3.8e-81 307.0 672 63.2
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 2.5e-80 304.3 666 63.4
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 3.4e-74 283.9 348 52.9
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 3.8e-73 280.4 474 70.9
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 1.5e-69 268.5 371 70.9
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 5.9e-66 256.5 337 46.9
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 2.2e-65 254.6 421 44.7
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 3.8e-65 253.8 437 72.5
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 1.9e-64 251.5 346 41.3
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 2.7e-63 247.7 379 43.3
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 4.4e-61 240.4 450 71.1
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 1.7e-60 238.4 458 57.0
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 1.1e-59 235.7 479 66.6
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 4.5e-58 230.3 175 64.6
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 1.7e-57 228.4 456 68.4
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 2.9e-57 227.6 474 67.5
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 1.6e-55 221.9 441 43.3
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 1.4e-54 218.8 166 66.9
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.6e-53 214.5 450 69.8
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.4e-53 213.8 452 69.9
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.8e-51 208.4 440 66.8
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 5.3e-51 206.8 143 74.1
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.3e-46 191.4 144 67.4
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 3.1e-43 181.0 161 56.5
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 1.0e-38 166.0 293 41.0
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 4.4e-37 160.6 141 58.9
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 4.9e-36 157.1 154 52.6
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 8.3e-36 156.4 104 74.0
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 1.1e-35 156.0 380 44.2
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 5.4e-35 153.7 105 72.4
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.8e-33 147.5 134 56.7
arahy.Tifrunner.gnm1.ann1.JYS69T Arachis hypogaea HOM05D003406 ORTHO05D004026 5.6e-32 143.7 107 97.2
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 1.6e-31 142.1 88 73.9
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 2.6e-29 134.8 141 50.4
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 2.6e-29 134.8 141 50.4
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 2.2e-28 131.7 141 49.6
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 1.9e-27 128.6 140 55.0
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 3.2e-27 127.9 110 55.5
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.4e-27 127.1 133 48.1
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-26 125.9 133 47.4
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 1.6e-26 125.6 133 47.4
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.7e-26 124.8 136 47.1
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.5e-26 124.4 133 47.4
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 1.7e-25 122.1 133 46.6
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 1.7e-25 122.1 133 46.6
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.9e-24 118.6 90 57.8
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 4.3e-24 117.5 129 55.8
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 9.5e-24 116.3 381 42.8
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.8e-23 114.8 135 52.6
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 2.3e-22 111.7 108 50.9
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 2.0e-21 108.6 301 43.2
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 5.8e-21 107.1 203 41.4
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 4.6e-18 97.4 78 53.8
TPR.G20465 Trifolium pratense HOM05D003406 ORTHO05D004026 4.6e-18 97.4 53 90.6
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 7.8e-18 96.7 60 73.3
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 2.3e-17 95.1 385 29.4
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 5.1e-17 94.0 53 67.9
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.6e-15 89.0 65 70.8
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 1.6e-15 89.0 56 75.0
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-13 82.8 54 63.0
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-13 82.8 54 63.0
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-13 82.8 54 63.0
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-13 82.8 54 63.0
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-13 82.8 54 63.0
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-13 82.8 54 63.0
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-13 82.8 54 63.0
C07p49630 Brassica napus HOM05D003406 ORTHO05D004026 2.0e-13 82.0 92 50.0
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.6e-13 81.6 54 61.1
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 7.5e-13 80.1 50 78.0
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 1.3e-12 79.3 47 80.9
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 4.9e-12 77.4 178 31.5
Hma1.2p1_1396F.1_g280660 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 3.2e-11 74.7 104 48.1
Gohir.D10G058700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 4.6e-10 70.9 45 77.8
Gorai.011G062800 Gossypium raimondii HOM05D003406 ORTHO05D004026 6.0e-10 70.5 45 75.6
Aa31LG8G12390 Aethionema arabicum HOM05D003406 ORTHO05D030983 8.6e-09 66.6 65 46.2
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.5e-08 65.1 38 68.4
C05p40950 Brassica napus HOM05D003406 ORTHO05D004026 1.6e-07 62.4 39 71.8
Aqoxy2G01592 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 6.2e-07 60.5 102 42.2
Actinidia19465 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.4e-06 59.3 205 34.6


User provided reference genes

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