Gene: Sopen08g020990

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g020990
  • Transcript Identifier Sopen08g020990.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 60055430-60071840 : positive

Gene Family Information

  • ID HOM05D003406
  • #Genes/#Species 201/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g020990.1

Descriptions

  • Description Encodes a protein with similarity to yeast Pfs2p, an mRNA processing factor. Involved in regulation of flowering time | affects FCA mRNA processing. Homozygous mutants are late flowering, null alleles are embryo lethal. | FY | FUNCTIONS IN: protein binding | INVOLVED IN: mRNA processing, regulation of flower development, embryo development ending in seed dormancy | LOCATED IN: CUL4 RING ubiquitin ligase complex | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , WD40 repeat-like-containing domain , WD40 repeat, conserved site , WD40-repeat-containing domain , WD40 repeat , WD40/YVTN repeat-like-containing domain , WD40 repeat, subgroup , G-protein beta WD-40 repeat, region | BEST Arabidopsis thaliana protein match is: pleiotropic regulatory locus 1 ., WD40/YVTN repeat-like-containing domain, Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009909
ISO
PLAZA Integrative Orthologyregulation of flower development AT5G13480
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G13480
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT5G13480

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080008
ISO
PLAZA Integrative OrthologyCul4-RING E3 ubiquitin ligase complex AT5G13480

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036322 WD40-repeat-containing domain superfamily
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR020472 G-protein beta WD-40 repeat
Mapman id Description
16.3.1.2.7 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component Pfs2/FY