Gene: AT5G13480

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G13480
  • Transcript Identifier AT5G13480.3
  • Gene Type Coding gene
  • Location Chr5 : 4326929-4331521 : negative

Gene Family Information

  • ID HOM05D003406
  • #Genes/#Species 201/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G13480.3
  • symbol FY
  • uniprot Q6NLV4

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description FY; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: pleiotropic regulatory locus 1 (TAIR:AT4G15900.1); Has 97899 Blast hits to 44472 proteins in 1019 species: Archae - 62; Bacteria - 9446; Metazoa - 41432; Fungi - 21528; Plants - 12338; Viruses - 53; Other Eukaryotes - 13040 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IGI
Gene OntologymRNA processing1
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy2
GO:0009909
IMP
Gene Ontologyregulation of flower development3
GO:0006378
IBA
Gene OntologymRNA polyadenylation4
GO:0009908
IEA
GOA Databaseflower development
GO:0030154
IEA
GOA Databasecell differentiation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding5
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0080008
IPI
Gene OntologyCul4-RING E3 ubiquitin ligase complex6
GO:0005847
IBA
Gene OntologymRNA cleavage and polyadenylation specificity factor complex4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR020472 G-protein beta WD-40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
16.3.1.2.7 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component Pfs2/FY