Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 0.0e+00 1178.3 595 100.0
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 0.0e+00 1144.0 612 95.9
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 3.7e-295 1017.7 612 84.5
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.1e-294 1016.1 614 84.9
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 1.4e-294 1015.8 612 84.5
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.6e-293 1011.5 612 84.0
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.6e-293 1011.5 612 84.0
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 2.6e-293 1011.5 615 84.1
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.7e-292 1008.8 620 84.0
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 2.2e-292 1008.4 614 83.9
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 6.4e-292 1006.9 613 84.2
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.1e-283 979.5 624 80.4
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.4e-283 979.2 608 81.1
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 2.5e-283 978.4 614 81.4
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 7.9e-282 973.4 610 80.2
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 3.9e-281 971.1 612 79.7
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 5.1e-281 970.7 653 76.1
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 1.1e-280 969.5 610 80.3
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 5.7e-280 967.2 626 78.8
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 2.8e-279 964.9 597 80.6
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.4e-278 962.6 619 77.4
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 1.8e-278 962.2 626 77.3
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.8e-278 962.2 608 79.1
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.4e-278 961.8 624 77.1
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 3.1e-278 961.4 590 80.8
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 4.1e-278 961.1 580 82.6
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 6.9e-278 960.3 623 78.5
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 1.2e-277 959.5 616 79.4
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 1.2e-277 959.5 619 77.1
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.5e-277 959.1 619 77.1
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 2.6e-277 958.4 590 80.3
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 3.4e-277 958.0 623 77.4
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 3.4e-277 958.0 612 78.9
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 4.5e-277 957.6 623 77.4
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.9e-277 957.2 622 77.8
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 5.9e-277 957.2 598 79.1
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 7.7e-277 956.8 593 80.4
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 7.7e-277 956.8 614 79.6
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 1.7e-276 955.7 622 77.5
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 2.9e-276 954.9 614 79.0
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 6.5e-276 953.7 605 79.0
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 1.1e-275 953.0 604 79.3
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.4e-275 952.6 604 80.0
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.2e-275 951.4 618 78.3
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.2e-275 951.0 586 81.2
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 5.5e-275 950.7 609 78.5
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 5.5e-275 950.7 605 79.5
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.2e-275 950.3 586 81.2
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 7.2e-275 950.3 617 78.3
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.2e-274 949.5 611 77.6
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 1.6e-274 949.1 617 78.6
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 4.6e-274 947.6 611 78.7
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 7.9e-274 946.8 598 78.4
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 7.9e-274 946.8 623 75.9
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 7.9e-274 946.8 614 78.3
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 1.4e-273 946.0 626 76.5
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 2.3e-273 945.3 596 78.0
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 2.3e-273 945.3 625 76.8
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 3.9e-273 944.5 563 82.9
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 6.7e-273 943.7 592 78.7
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.5e-272 942.6 581 81.8
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.0e-272 942.2 592 78.7
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 2.5e-272 941.8 606 78.7
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 2.5e-272 941.8 599 78.6
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.5e-272 941.8 598 80.8
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 3.3e-272 941.4 620 76.1
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 4.3e-272 941.0 595 79.5
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 7.4e-272 940.3 613 77.2
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 2.2e-271 938.7 623 75.6
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 2.8e-271 938.3 636 75.5
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 2.8e-271 938.3 614 77.2
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 8.2e-271 936.8 619 77.2
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 8.2e-271 936.8 611 78.4
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 1.1e-270 936.4 618 77.7
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.4e-270 936.0 617 76.3
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.4e-270 935.3 574 81.2
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 4.1e-270 934.5 620 75.6
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 4.1e-270 934.5 612 77.9
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 1.5e-269 932.6 586 79.9
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 1.5e-269 932.6 609 76.8
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 2.6e-269 931.8 616 77.4
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 2.6e-269 931.8 616 77.4
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 4.5e-269 931.0 640 73.3
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 5.9e-269 930.6 587 80.6
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 7.7e-269 930.2 598 78.9
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.3e-268 929.5 587 80.4
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 1.7e-268 929.1 605 77.4
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 3.8e-268 927.9 602 77.6
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 5.0e-268 927.5 607 77.1
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 8.5e-268 926.8 617 77.0
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 8.5e-268 926.8 617 77.0
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 1.1e-267 926.4 601 77.7
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 1.1e-267 926.4 587 80.1
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 5.5e-267 924.1 591 78.0
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 9.4e-267 923.3 587 79.7
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 9.4e-267 923.3 587 79.7
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.2e-266 922.9 610 76.2
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.6e-266 922.5 571 79.9
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 2.1e-266 922.2 630 75.7
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 2.1e-266 922.2 571 79.7
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 3.6e-266 921.4 587 79.7
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 6.1e-266 920.6 615 76.3
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 1.1e-264 916.4 601 77.5
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.1e-262 909.8 684 68.6
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 1.2e-261 906.4 615 74.8
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 7.7e-261 903.7 657 71.7
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 2.9e-260 901.7 532 82.7
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 8.5e-260 900.2 574 78.4
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 3.2e-259 898.3 591 74.6
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.7e-258 894.4 579 76.2
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.1e-256 889.8 601 73.0
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 5.7e-256 887.5 583 73.9
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.7e-255 885.9 593 74.7
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 1.2e-248 863.2 623 71.9
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.4e-248 861.3 553 78.8
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 8.3e-247 857.1 564 74.6
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.0e-245 852.4 563 75.1
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.7e-242 841.3 582 74.1
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 4.7e-242 841.3 532 77.4
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 8.8e-241 837.0 544 76.3
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 2.7e-237 825.5 625 69.4
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 3.7e-231 805.1 633 67.1
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 2.9e-228 795.4 590 66.9
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 5.8e-224 781.2 562 67.8
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.1e-222 776.9 609 67.5
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.5e-219 766.5 495 80.6
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 1.8e-217 759.6 494 75.7
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.5e-211 739.2 495 74.7
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 6.2e-210 734.6 495 75.6
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 7.1e-206 721.1 555 64.5
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.8e-202 709.1 438 80.6
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 7.1e-198 694.5 495 72.3
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.2e-197 693.7 431 80.5
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 1.4e-193 680.2 438 76.3
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.3e-191 673.7 592 58.6
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.1e-190 670.6 445 75.3
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 5.3e-177 625.2 403 76.7
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 9.7e-163 577.8 438 69.6
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.1e-157 560.1 588 49.5
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 4.6e-157 558.9 312 87.2
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 1.4e-148 530.8 389 72.5
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 2.8e-122 443.4 275 80.4
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.5e-115 421.0 344 68.0
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 2.4e-97 360.5 265 66.8
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 1.7e-87 327.8 221 76.5
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 1.1e-78 298.5 206 73.8
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 2.0e-75 287.7 157 86.6
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 2.1e-69 267.7 553 33.3
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 1.9e-57 228.0 126 84.1
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.7e-56 224.2 150 75.3
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 6.9e-52 209.5 116 92.2
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 1.5e-51 208.4 178 63.5
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 1.8e-47 194.9 131 72.5
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.8e-45 187.6 105 81.0
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 1.8e-44 184.9 133 66.2
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.6e-43 181.0 147 61.9
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 9.4e-41 172.6 111 81.1
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 4.6e-40 170.2 215 50.2
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 1.8e-39 168.3 122 69.7
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 8.2e-37 159.5 114 68.4
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 1.8e-36 158.3 96 83.3
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.5e-35 155.2 115 65.2
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 5.9e-35 153.3 111 70.3
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 5.5e-33 146.7 115 64.3
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 5.5e-25 120.2 200 38.5
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 9.7e-22 109.4 70 68.6
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 7.7e-19 99.8 55 89.1
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.1e-16 91.7 80 65.0
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 3.6e-16 90.9 179 30.2
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 3.4e-14 84.3 120 45.0
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 4.4e-14 84.0 61 70.5
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 9.1e-12 76.3 67 52.2
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 5.9e-11 73.6 89 56.2


User provided reference genes

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