Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 0.0e+00 1185.6 613 100.0
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 3.7e-282 974.5 604 83.9
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.6e-277 959.1 604 82.6
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 2.3e-276 955.3 607 82.4
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 1.1e-273 946.4 607 80.7
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 9.0e-273 943.3 605 80.5
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 3.8e-271 937.9 605 80.2
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 1.1e-270 936.4 609 79.3
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 2.5e-270 935.3 607 80.1
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 6.3e-266 920.6 609 78.0
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 7.2e-262 907.1 608 77.1
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 3.6e-261 904.8 602 79.7
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 3.8e-255 884.8 474 97.0
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 2.2e-250 869.0 608 74.5
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 9.4e-230 800.4 604 68.2
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 1.6e-229 799.7 607 67.9
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 1.0e-228 797.0 607 67.7
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 1.8e-228 796.2 606 68.5
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.2e-227 793.5 608 68.1
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.0e-227 792.7 608 67.6
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 1.2e-224 783.5 602 66.4
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 1.6e-224 783.1 602 66.9
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 2.7e-224 782.3 606 66.0
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 7.7e-224 780.8 604 65.6
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.3e-223 779.2 611 66.4
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 6.6e-223 777.7 602 65.8
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 1.5e-222 776.5 611 64.8
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 1.9e-222 776.2 606 65.8
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 3.3e-222 775.4 609 65.8
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 4.2e-222 775.0 605 64.6
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 5.5e-222 774.6 602 65.4
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 7.2e-222 774.2 603 66.2
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 4.7e-221 771.5 606 66.8
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 4.7e-221 771.5 609 66.3
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 6.1e-221 771.2 624 64.3
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 1.8e-220 769.6 601 64.6
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 2.3e-220 769.2 606 65.0
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 2.0e-219 766.1 605 69.3
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.4e-219 765.4 602 65.3
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 3.7e-218 761.9 606 64.5
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 4.9e-218 761.5 605 64.5
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.1e-217 760.4 608 65.0
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 1.4e-217 760.0 607 64.9
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 5.4e-217 758.1 621 63.4
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 3.5e-216 755.4 608 65.5
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 3.5e-216 755.4 613 64.6
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 5.0e-215 751.5 600 64.3
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 6.6e-215 751.1 609 64.4
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 1.1e-214 750.4 609 64.5
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.9e-214 749.6 606 62.9
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 2.5e-214 749.2 606 64.4
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 4.3e-214 748.4 613 64.3
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 5.6e-214 748.0 604 63.9
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 7.3e-214 747.7 589 65.7
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.2e-213 746.9 603 64.2
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.6e-213 746.5 613 63.8
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 2.1e-213 746.1 612 64.5
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 2.8e-213 745.7 611 63.7
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 4.7e-213 745.0 631 62.3
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 8.0e-213 744.2 641 61.6
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 2.3e-212 742.7 601 63.7
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 1.2e-211 740.3 600 65.2
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.5e-211 740.0 605 64.0
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 3.4e-211 738.8 605 64.0
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 4.4e-211 738.4 605 64.0
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 5.8e-211 738.0 613 63.5
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 6.4e-210 734.6 600 63.3
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 6.4e-210 734.6 601 63.6
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 8.3e-210 734.2 604 62.4
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 9.2e-209 730.7 610 63.1
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 9.2e-209 730.7 601 63.4
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 1.2e-208 730.3 606 63.9
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 1.6e-208 729.9 601 63.2
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 4.6e-208 728.4 616 61.0
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 7.8e-208 727.6 613 61.2
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 2.3e-207 726.1 605 60.8
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 6.6e-207 724.5 617 61.9
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 2.5e-206 722.6 606 63.7
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 2.5e-206 722.6 607 61.4
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 3.3e-206 722.2 608 61.7
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 4.3e-206 721.8 602 62.8
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 1.2e-205 720.3 602 62.6
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.8e-204 716.5 605 60.3
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 1.8e-204 716.5 614 60.6
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 2.3e-204 716.1 576 63.5
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 7.5e-203 711.1 612 61.4
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 9.8e-203 710.7 604 60.8
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 3.2e-201 705.7 608 61.3
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.2e-200 703.7 539 64.4
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 2.7e-200 702.6 607 60.3
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 4.6e-200 701.8 548 66.2
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 4.6e-200 701.8 603 59.5
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 1.3e-199 700.3 614 60.4
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.7e-199 699.9 608 61.0
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 2.3e-199 699.5 612 61.3
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 6.6e-199 698.0 607 59.8
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 1.1e-198 697.2 592 61.5
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 4.3e-198 695.3 606 58.4
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 4.3e-198 695.3 565 64.1
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 8.9e-196 687.6 611 61.4
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.9e-193 679.9 604 60.1
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 7.1e-193 677.9 604 59.9
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 1.6e-192 676.8 610 56.9
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 4.6e-192 675.2 611 59.7
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 4.6e-192 675.2 611 59.7
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 6.0e-192 674.9 611 60.1
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.3e-191 672.9 611 59.7
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.9e-190 669.8 619 56.5
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.3e-190 669.1 611 59.7
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 6.2e-189 664.8 622 57.2
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 2.2e-186 656.4 608 56.7
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.0e-183 647.5 601 59.4
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 8.7e-183 644.4 527 63.4
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 9.6e-182 641.0 613 56.8
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 1.1e-180 637.5 590 56.9
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 2.4e-180 636.3 604 56.6
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 3.1e-180 636.0 607 57.0
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 1.2e-176 624.0 599 55.3
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 9.6e-174 614.4 605 56.2
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 6.7e-159 565.1 609 51.2
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 1.6e-157 560.5 519 61.7
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 2.1e-157 560.1 611 50.6
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 6.5e-154 548.5 621 49.3
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.8e-151 540.4 607 50.4
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.2e-149 533.5 359 79.4
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 2.7e-144 516.5 610 48.2
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.7e-133 480.7 445 56.4
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 5.9e-131 472.2 603 45.9
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 2.2e-122 443.7 396 60.6
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 2.9e-114 416.8 632 39.7
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 3.8e-114 416.4 326 65.3
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 8.8e-111 405.2 460 46.1
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.6e-106 388.7 322 62.4
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 1.2e-96 358.2 624 39.4
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 6.2e-88 329.3 357 51.8
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 1.1e-84 318.5 299 57.9
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 1.8e-79 301.2 198 74.7
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 3.4e-78 297.0 666 30.3
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 6.2e-64 249.6 183 68.9
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 4.0e-63 246.9 226 59.7
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 8.4e-61 239.2 647 31.4
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.1e-55 222.2 162 65.4
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.7e-53 214.9 137 71.5
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.0e-46 191.4 184 62.0
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 2.1e-43 181.4 391 36.1
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 9.3e-36 156.0 183 54.6
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 6.1e-35 153.3 127 61.4
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.3e-34 152.1 118 66.1
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 1.2e-30 139.0 80 80.0
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.3e-29 135.6 102 64.7
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.8e-29 134.0 102 63.7
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 5.0e-29 133.7 136 56.6
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.4e-28 132.1 113 61.9
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.9e-28 131.7 113 61.1
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 5.1e-26 123.6 77 71.4
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 2.4e-23 114.8 210 39.0
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 1.9e-20 105.1 131 51.1
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 5.5e-20 103.6 56 85.7
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 4.7e-19 100.5 82 61.0
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 6.1e-19 100.1 80 65.0
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 3.7e-16 90.9 153 41.8
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 1.6e-14 85.5 102 51.0
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 1.1e-12 79.3 72 61.1
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 2.6e-09 68.2 44 79.5
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 5.9e-06 57.0 34 76.5


User provided reference genes

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