Gene: Solyc07g047670.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc07g047670.3
- Transcript Identifier Solyc07g047670.3.1
- Gene Type Coding gene
- Location SL4.0ch07 : 58780514-58787077 : positive
Gene Family Information
- ID HOM05D004159
- #Genes/#Species 170/99
- Phylogenetic origin
- ID ORTHO05D005858
- #Genes/#Species 151/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc07g047670.3.1
- uniprot A0A3Q7HD34
- gene_id Solyc07g047670
Descriptions
- Description Pescadillo homolog (AHRD V3.3 *** A0A2G2WCS4_CAPBA)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:2000232 | ISO | PLAZA Integrative Orthology | regulation of rRNA processing | AT5G14520 |
| GO:0000463 | IBA IEA | GOA Database | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | |
| GO:0042254 | IEA | GOA Database | ribosome biogenesis | |
| GO:0042254 | IEA | InterPro | ribosome biogenesis | |
| GO:0006364 | IEA | GOA Database | rRNA processing | |
| GO:0000466 | IEA | GOA Database | maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | |
| GO:0042273 | IEA | GOA Database | ribosomal large subunit biogenesis |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G14520 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G14520 |
| GO:0003723 | IBA | GOA Database | RNA binding | |
| GO:0043021 | IEA | GOA Database | ribonucleoprotein complex binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005654 | IEA | GOA Database | nucleoplasm | |
| GO:0070545 | IBA | GOA Database | PeBoW complex | |
| GO:0005730 | IEA | GOA Database | nucleolus | |
| GO:0005730 | IEA | InterPro | nucleolus | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0030687 | IEA | GOA Database | preribosome, large subunit precursor |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 17.1.2.2.1.10.1 | Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.pre-60S ribosomal subunit nuclear assembly.PES-BOP1-WDR12 (PeBoW) complex.component PES |