Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.7e-90 335.9 160 100.0
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.4e-87 326.2 160 98.1
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.3e-85 319.7 160 95.0
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 3.5e-83 311.6 156 95.5
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 3.4e-62 241.9 160 71.9
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 4.4e-62 241.5 163 69.9
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 2.4e-60 235.7 177 64.4
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 5.4e-60 234.6 157 67.5
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 7.8e-59 230.7 157 69.4
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 1.9e-57 226.1 142 73.2
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.2e-56 223.4 179 61.5
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.2e-56 223.4 179 61.5
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 1.2e-56 223.4 143 69.9
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 3.6e-56 221.9 157 67.5
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 8.1e-56 220.7 143 67.8
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.4e-55 219.9 177 61.0
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.0e-55 218.4 157 67.5
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 2.0e-54 216.1 166 63.9
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.3e-53 213.4 177 58.8
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 1.3e-53 213.4 164 64.6
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 2.2e-53 212.6 173 58.4
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 1.1e-52 210.3 174 58.6
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 1.1e-52 210.3 174 58.6
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 4.1e-52 208.4 131 70.2
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 4.1e-52 208.4 136 69.1
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 9.2e-52 207.2 166 59.6
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 9.2e-52 207.2 166 59.6
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.7e-51 205.7 195 53.3
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 3.5e-51 205.3 195 53.3
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 4.6e-51 204.9 174 58.6
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 7.8e-51 204.1 155 60.0
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 1.0e-50 203.8 166 59.0
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.0e-50 203.8 166 59.0
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.3e-50 203.4 166 58.4
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 1.7e-50 203.0 127 71.7
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.7e-50 203.0 130 67.7
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.3e-50 202.6 168 59.5
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 3.9e-50 201.8 116 74.1
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 5.1e-50 201.4 174 56.3
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 8.6e-50 200.7 175 55.4
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 1.5e-49 199.9 179 55.9
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.5e-49 199.1 171 58.5
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 3.3e-49 198.7 141 60.3
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 3.3e-49 198.7 141 60.3
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.2e-48 196.8 169 56.8
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 1.2e-48 196.8 175 56.6
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.6e-48 195.3 172 54.1
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 4.7e-48 194.9 138 60.9
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 8.1e-48 194.1 149 60.4
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.1e-47 193.7 137 66.4
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.4e-47 193.4 136 66.2
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.4e-47 192.6 174 55.7
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.4e-47 192.6 121 69.4
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 5.2e-47 191.4 168 54.8
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 8.9e-47 190.7 176 49.4
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 8.9e-47 190.7 138 63.8
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 4.4e-46 188.3 172 54.1
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 4.4e-46 188.3 172 54.1
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 4.4e-46 188.3 149 61.1
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 9.9e-46 187.2 140 62.9
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.7e-45 186.4 171 53.2
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.7e-45 186.4 118 70.3
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 2.2e-45 186.0 170 54.7
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.8e-45 185.3 135 60.0
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 4.9e-45 184.9 128 63.3
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 8.4e-45 184.1 174 52.9
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 8.4e-45 184.1 127 61.4
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.4e-44 183.3 175 49.7
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 2.4e-44 182.6 124 62.9
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 2.4e-44 182.6 148 58.1
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 2.4e-44 182.6 152 56.6
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 3.2e-44 182.2 155 57.4
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 3.2e-44 182.2 155 57.4
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 3.2e-44 182.2 155 57.4
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 3.2e-44 182.2 155 57.4
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.2e-44 182.2 146 57.5
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 3.2e-44 182.2 130 61.5
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 4.2e-44 181.8 148 57.4
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 4.2e-44 181.8 152 56.6
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 5.4e-44 181.4 159 55.3
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 5.4e-44 181.4 152 57.2
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.1e-44 181.0 140 60.0
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 9.2e-44 180.6 130 61.5
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 1.6e-43 179.9 155 56.8
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 1.6e-43 179.9 155 56.8
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 2.1e-43 179.5 112 67.9
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.1e-43 179.5 165 52.7
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 4.6e-43 178.3 126 64.3
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 6.0e-43 177.9 161 54.0
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.7e-42 176.4 117 65.0
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.7e-42 176.4 141 56.7
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 1.7e-42 176.4 147 56.5
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.3e-42 176.0 149 55.7
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 3.0e-42 175.6 161 53.4
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 3.0e-42 175.6 124 64.5
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 6.6e-42 174.5 139 58.3
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 1.1e-41 173.7 150 55.3
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 1.1e-41 173.7 146 54.8
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.5e-41 173.3 129 58.9
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 2.5e-41 172.6 157 54.1
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 4.3e-41 171.8 136 60.3
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 4.3e-41 171.8 165 50.9
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.3e-41 171.8 150 54.0
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 5.6e-41 171.4 120 65.8
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 7.3e-41 171.0 150 54.0
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 9.6e-41 170.6 165 50.3
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 9.6e-41 170.6 148 54.1
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 2.1e-40 169.5 126 59.5
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.8e-40 169.1 118 65.3
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 3.6e-40 168.7 160 51.9
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 3.6e-40 168.7 160 51.9
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 3.6e-40 168.7 160 51.9
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.7e-40 168.3 117 65.0
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 6.2e-40 167.9 119 61.3
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 8.1e-40 167.5 155 52.9
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.1e-39 167.2 124 57.3
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.8e-39 166.4 132 55.3
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 2.4e-39 166.0 129 55.8
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 4.0e-39 165.2 132 55.3
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 9.0e-39 164.1 167 49.1
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 9.0e-39 164.1 138 55.1
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 1.2e-38 163.7 123 57.7
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.5e-38 163.3 118 60.2
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 2.0e-38 162.9 120 60.0
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.9e-38 160.6 117 61.5
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.7e-37 159.8 164 49.4
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 2.9e-37 159.1 116 59.5
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.4e-36 156.8 173 47.4
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 1.9e-36 156.4 140 53.6
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 9.3e-36 154.1 128 52.3
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 1.2e-35 153.7 128 55.5
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.6e-35 153.3 125 56.8
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.5e-35 152.1 143 51.0
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.9e-33 146.4 116 55.2
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.3e-33 144.4 112 58.9
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 8.1e-32 141.0 123 49.6
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.1e-31 140.6 93 65.6
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 3.1e-31 139.0 120 50.0
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 1.5e-30 136.7 113 54.9
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.0e-30 136.3 102 60.8
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 3.4e-30 135.6 148 44.6
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 4.5e-30 135.2 122 52.5
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 7.6e-30 134.4 161 45.3
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 8.4e-29 131.0 98 57.1
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.1e-28 130.6 122 50.8
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.8e-26 123.2 124 52.4
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 3.9e-26 122.1 116 48.3
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 5.1e-26 121.7 109 55.0
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.7e-26 120.9 93 58.1
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 3.3e-25 119.0 111 48.6
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.3e-25 118.6 92 59.8
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-24 116.7 86 60.5
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 2.8e-24 115.9 111 51.4
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 3.1e-23 112.5 109 52.3
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 4.5e-22 108.6 109 48.6
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.2e-21 106.3 109 45.9
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 2.9e-21 105.9 121 42.1
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 3.8e-21 105.5 124 43.5
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 3.2e-20 102.4 147 37.4
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 4.2e-20 102.1 121 41.3
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 4.2e-20 102.1 121 41.3
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.1e-19 99.8 78 57.7
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.7e-19 99.4 107 45.8
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 2.7e-19 99.4 121 39.7
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 3.0e-18 95.9 121 38.8
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 4.3e-17 92.0 101 42.6
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.4e-17 91.3 70 57.1
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 2.5e-12 76.3 126 38.1
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 4.2e-12 75.5 114 40.4
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 5.1e-10 68.6 45 66.7
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.8e-07 60.1 42 59.5
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 7.7e-06 54.7 72 38.9


User provided reference genes

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