Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 0.0e+00 1361.7 692 100.0
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 4.2e-295 1017.7 576 92.9
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 8.9e-285 983.4 576 90.3
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 1.5e-284 982.6 576 90.1
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 1.8e-269 932.6 605 81.3
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 2.1e-265 919.1 605 80.2
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 2.3e-264 915.6 605 80.3
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 3.3e-263 911.8 605 79.5
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 1.4e-261 906.4 605 78.5
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 1.8e-261 906.0 605 78.0
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 9.6e-255 883.6 592 78.9
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.1e-247 860.1 553 83.7
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 5.3e-245 851.3 604 74.0
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 5.8e-244 847.8 584 79.6
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 7.6e-244 847.4 606 73.6
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 8.4e-243 844.0 605 72.9
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 8.4e-243 844.0 645 70.4
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 1.4e-242 843.2 605 72.9
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 2.4e-242 842.4 605 73.1
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 3.2e-242 842.0 608 71.9
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 9.3e-242 840.5 612 72.4
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 1.2e-241 840.1 602 72.6
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.5e-241 838.6 596 73.7
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 3.5e-241 838.6 605 73.2
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 7.9e-241 837.4 605 71.6
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 1.0e-240 837.0 606 72.9
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 1.0e-240 837.0 605 71.7
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 1.3e-240 836.6 605 72.4
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-240 836.6 596 73.5
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.1e-240 834.7 596 73.5
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.1e-240 834.7 596 73.5
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 8.7e-240 833.9 606 72.4
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 4.3e-239 831.6 606 72.3
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 1.6e-238 829.7 606 72.4
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 2.8e-238 828.9 606 72.1
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 3.7e-238 828.6 605 72.2
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 4.0e-237 825.1 584 73.1
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 5.3e-237 824.7 605 72.2
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 9.0e-237 823.9 642 68.5
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 2.0e-236 822.8 605 72.2
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 2.6e-236 822.4 605 70.7
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 3.4e-236 822.0 614 70.7
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 1.0e-235 820.5 605 71.1
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 2.2e-235 819.3 605 71.2
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 8.4e-235 817.4 603 72.8
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 1.9e-234 816.2 605 70.9
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 2.5e-234 815.8 605 69.8
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 4.2e-234 815.1 612 70.1
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 7.9e-233 810.8 605 70.1
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 1.0e-232 810.4 657 65.6
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 1.9e-231 806.2 608 70.1
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 1.1e-229 800.4 605 70.7
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 1.1e-229 800.4 608 69.6
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 2.4e-229 799.3 594 70.0
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 3.4e-228 795.4 605 69.8
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 2.9e-227 792.3 566 73.1
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 1.1e-226 790.4 604 68.0
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 2.5e-226 789.3 605 68.4
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 5.5e-226 788.1 613 69.0
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 7.2e-226 787.7 593 69.1
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 7.2e-226 787.7 605 68.3
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 2.1e-225 786.2 605 68.4
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 2.3e-224 782.7 605 66.9
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 1.9e-223 779.6 628 66.4
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 2.5e-223 779.2 594 67.8
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 2.5e-223 779.2 594 67.8
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 7.4e-223 777.7 594 67.3
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 4.8e-222 775.0 609 66.5
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 8.2e-222 774.2 606 69.1
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 5.3e-221 771.5 604 66.6
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 6.9e-221 771.2 605 66.9
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 6.9e-221 771.2 604 66.7
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 9.0e-221 770.8 605 66.3
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 9.0e-221 770.8 605 66.8
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 1.5e-220 770.0 593 68.3
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 1.3e-219 766.9 578 70.8
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 1.7e-219 766.5 614 65.1
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 1.7e-219 766.5 607 66.6
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 5.0e-219 765.0 581 70.4
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 4.2e-218 761.9 610 65.4
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.1e-217 759.6 592 69.6
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 4.6e-217 758.4 605 65.8
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 1.4e-216 756.9 545 72.8
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 5.7e-215 751.5 605 65.5
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 3.7e-214 748.8 516 75.6
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 6.3e-214 748.0 574 68.8
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 1.8e-213 746.5 608 65.0
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 3.1e-213 745.7 629 64.2
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 6.5e-211 738.0 604 64.9
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 1.1e-210 737.3 544 71.7
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 7.4e-207 724.5 632 63.6
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 1.1e-205 720.7 595 64.2
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 1.6e-201 706.8 621 61.8
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.0e-199 699.9 606 61.9
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 7.5e-199 698.0 599 60.6
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 1.1e-197 694.1 518 70.3
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 9.1e-197 691.0 595 62.9
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 9.1e-197 691.0 584 65.2
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 2.0e-196 689.9 601 60.4
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 1.0e-195 687.6 646 60.7
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 4.2e-194 682.2 608 61.2
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 5.7e-191 671.8 578 65.1
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 3.1e-181 639.4 611 58.8
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 3.0e-176 622.9 573 60.4
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 4.3e-170 602.4 596 56.5
Lalb_Chr21g0313711 Lupinus albus HOM05D004229 ORTHO05D005468 4.3e-170 602.4 395 80.5
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 7.3e-170 601.7 619 53.6
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 1.6e-164 583.9 423 72.6
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 7.5e-159 565.1 419 72.1
HPP92_008472 Vanilla planifolia HOM05D004229 ORTHO05D005468 9.8e-159 564.7 583 53.0
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 2.1e-156 557.0 619 51.4
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 3.4e-151 539.7 613 49.3
TPR.G10283 Trifolium pratense HOM05D004229 ORTHO05D005468 6.9e-144 515.4 319 83.1
MBI09_g03016_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 6.4e-126 455.7 343 69.7
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 1.4e-125 454.5 543 50.1
Peaxi162Scf00176g01310 Petunia axillaris HOM05D004229 ORTHO05D005468 4.2e-125 453.0 377 64.5
SEGI_16046 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 2.2e-118 430.6 337 65.6
AUR62041380 Chenopodium quinoa HOM05D004229 ORTHO05D005468 3.8e-110 403.3 275 74.9
AagrBONN_evm.TU.Sc2ySwM_344.2563 Anthoceros agrestis HOM05D004229 ORTHO05D005468 1.1e-109 401.7 436 50.9
QL08p054691 Quercus lobata HOM05D004229 ORTHO05D005468 1.9e-93 347.8 242 73.6
Carub.0005s2206 Capsella rubella HOM05D004229 ORTHO05D005468 7.2e-93 345.9 322 56.8
arahy.Tifrunner.gnm1.ann1.5LR8AY Arachis hypogaea HOM05D004229 ORTHO05D005468 1.1e-85 322.0 288 65.6
Cpa.g.sc1603.2 Carica papaya HOM05D004229 ORTHO05D005468 1.5e-85 321.6 236 70.8
PSO170G6718 Papaver somniferum HOM05D004229 ORTHO05D005468 2.1e-84 317.8 300 57.3
PRCOL_00000311 Prasinoderma coloniale HOM05D004229 ORTHO05D005468 5.2e-83 313.2 635 33.5
FAN04G2411 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.2e-82 312.0 331 55.0
AUR62026961 Chenopodium quinoa HOM05D004229 ORTHO05D005468 4.8e-81 306.6 261 64.0
HPP92_008482 Vanilla planifolia HOM05D004229 ORTHO05D005468 2.0e-79 301.2 272 59.6
RcHm_v2.0_Chr7g0237381 Rosa chinensis HOM05D004229 ORTHO05D005468 2.9e-78 297.4 277 55.2
FAN01G0054 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.2e-76 292.0 212 70.3
Lalb_Chr21g0313701 Lupinus albus HOM05D004229 ORTHO05D005468 9.8e-74 282.3 193 75.6
arahy.Tifrunner.gnm1.ann1.I4EZ5E Arachis hypogaea HOM05D004229 ORTHO05D005468 1.3e-73 282.0 195 76.9
FAN13G1026 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-73 282.0 303 54.5
Cre12.g515550 Chlamydomonas reinhardtii HOM05D004229 ORTHO05D005468 6.3e-73 279.6 729 30.3
FAN13G0469 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.4e-72 278.5 287 52.6
Cc02_g10970 Coffea canephora HOM05D004229 ORTHO05D005468 9.8e-66 255.8 166 77.1
AUR62041377 Chenopodium quinoa HOM05D004229 ORTHO05D005468 2.1e-60 238.0 206 60.2
Cpa.g.sc912.1 Carica papaya HOM05D004229 ORTHO05D005468 1.1e-56 225.7 148 78.4
CBR_g31454 Chara braunii HOM05D004229 ORTHO05D005468 8.9e-51 206.1 204 54.9
CBR_g52604 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-49 200.7 237 45.6
QL08p054473 Quercus lobata HOM05D004229 ORTHO05D005468 3.2e-48 197.6 132 73.5
FAN04G2028 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.1e-48 197.2 159 64.2
arahy.Tifrunner.gnm1.ann1.ED1Y34 Arachis hypogaea HOM05D004229 ORTHO05D005468 6.0e-47 193.4 139 73.4
MCO07G397 Micromonas commoda HOM05D004229 ORTHO05D005468 1.1e-45 189.1 736 24.9
RcHm_v2.0_Chr7g0237401 Rosa chinensis HOM05D004229 ORTHO05D005468 1.7e-41 175.3 124 70.2
RcHm_v2.0_Chr6g0252451 Rosa chinensis HOM05D004229 ORTHO05D005468 5.4e-40 170.2 128 65.6
SEGI_10422 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 1.1e-37 162.5 109 71.6
QL08p054558 Quercus lobata HOM05D004229 ORTHO05D005468 4.3e-37 160.6 158 61.4
arahy.Tifrunner.gnm1.ann1.GHM8NP Arachis hypogaea HOM05D013388 ORTHO05D084424 5.6e-29 133.7 81 87.7
SHI08895 Sapria himalayana HOM05D004229 ORTHO05D005468 2.4e-27 128.3 107 62.6
Cfa022006 Carpinus fangiana HOM05D004229 ORTHO05D005468 4.0e-27 127.5 499 25.9
Carub.0005s2207 Capsella rubella HOM05D004229 ORTHO05D005468 1.9e-24 118.6 84 72.6
CBR_g52606 Chara braunii HOM05D004229 ORTHO05D005468 1.6e-20 105.5 128 50.8
arahy.Tifrunner.gnm1.ann1.JQTE0Q Arachis hypogaea HOM05D013388 ORTHO05D085873 8.7e-14 83.2 65 70.8
MELO3C027676.2 Cucumis melo HOM05D004229 ORTHO05D025211 3.3e-13 81.3 95 48.4
Solyc05g024120.3 Solanum lycopersicum HOM05D004229 ORTHO05D005468 5.6e-13 80.5 115 46.1
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.3e-12 79.3 58 67.2
MBI09_g03431_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 1.3e-12 79.3 49 73.5
arahy.Tifrunner.gnm1.ann1.N770HY Arachis hypogaea HOM05D013388 ORTHO05D086002 3.7e-12 77.8 64 68.8
Sopen05g018750 Solanum pennellii HOM05D000004 ORTHO05D000002 4.0e-11 74.3 86 52.3
MELO3C029984.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.3e-09 69.3 54 68.5
SEGI_01819 Sequoiadendron giganteum HOM05D004229 ORTHO05D025211 1.9e-08 65.5 48 68.8
Sopen05g018790 Solanum pennellii HOM05D004229 ORTHO05D005468 1.9e-08 65.5 115 40.0
Solyc05g024110.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 4.2e-08 64.3 41 65.9
RcHm_v2.0_Chr7g0237391 Rosa chinensis HOM05D004229 ORTHO05D005468 6.0e-07 60.5 42 66.7
AUR62041379 Chenopodium quinoa HOM05D004229 ORTHO05D000001 5.1e-06 57.4 37 73.0


User provided reference genes

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